RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 HAP1P54257 671 aaPredicted RBP12.81□□□□□ -0.36
VPS25-205ENST00000590339 PANK3Q9H999 370 aa12.81□□□□□ -0.36
VPS25-205ENST00000590339 USP21Q9UK80 565 aa12.81□□□□□ -0.36
VPS25-205ENST00000590339 CABLES1Q8TDN4 633 aa12.8□□□□□ -0.36
VPS25-205ENST00000590339 PUS7Q96PZ0 661 aaKnown RBP12.8□□□□□ -0.36
VPS25-205ENST00000590339 SPATA31A3Q5VYP0 1347 aa12.8□□□□□ -0.36
VPS25-205ENST00000590339 SHPRHQ149N8 1683 aa12.8□□□□□ -0.36
VPS25-205ENST00000590339 NGDNQ8NEJ9 315 aaKnown RBP12.79□□□□□ -0.36
VPS25-205ENST00000590339 CDK19Q9BWU1 502 aa12.79□□□□□ -0.36
VPS25-205ENST00000590339 PRR36Q9H6K5 1346 aa12.79□□□□□ -0.36
VPS25-205ENST00000590339 PXDNQ92626 1479 aa12.78□□□□□ -0.36
VPS25-205ENST00000590339 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.37
VPS25-205ENST00000590339 RBM6P78332 1123 aaKnown RBP12.77□□□□□ -0.37
VPS25-205ENST00000590339 AMER1Q5JTC6 1135 aaPredicted RBP12.77□□□□□ -0.37
VPS25-205ENST00000590339 NUDT16Q96DE0 195 aaKnown RBP12.77□□□□□ -0.37
VPS25-205ENST00000590339 ADGRB2O60241 1585 aa12.77□□□□□ -0.37
VPS25-205ENST00000590339 NLRP13Q86W25 1043 aa12.76□□□□□ -0.37
VPS25-205ENST00000590339 FNBP4Q8N3X1 1017 aaPredicted RBP12.76□□□□□ -0.37
VPS25-205ENST00000590339 TRPC5Q9UL62 973 aaPredicted RBP12.76□□□□□ -0.37
VPS25-205ENST00000590339 GTF3C3Q9Y5Q9 886 aa12.76□□□□□ -0.37
VPS25-205ENST00000590339 INSRP06213 1382 aa12.76□□□□□ -0.37
VPS25-205ENST00000590339 NINLQ9Y2I6 1382 aa12.76□□□□□ -0.37
VPS25-205ENST00000590339 ANKRD26Q9UPS8 1709 aa12.76□□□□□ -0.37
VPS25-205ENST00000590339 ANKARQ7Z5J8 1434 aa12.74□□□□□ -0.37
VPS25-205ENST00000590339 EVC2Q86UK5 1308 aa12.74□□□□□ -0.37
VPS25-205ENST00000590339 SRPK2P78362 688 aaKnown RBP12.74□□□□□ -0.37
VPS25-205ENST00000590339 FMN2Q9NZ56 1722 aa12.74□□□□□ -0.37
VPS25-205ENST00000590339 ZBED9Q6R2W3 1325 aa12.73□□□□□ -0.37
VPS25-205ENST00000590339 HNRNPUQ00839 825 aaKnown RBP eCLIP12.73□□□□□ -0.37
VPS25-205ENST00000590339 PNISRQ8TF01 805 aaKnown RBP12.73□□□□□ -0.37
VPS25-205ENST00000590339 CABP2Q9NPB3 220 aa12.73□□□□□ -0.37
VPS25-205ENST00000590339 NSD3Q9BZ95 1437 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 SBNO1A3KN83 1393 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 ATAD2Q6PL18 1390 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 ANKRD36BQ8N2N9 1353 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 KNSTRNQ9Y448 316 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
VPS25-205ENST00000590339 BLMP54132 1417 aaPredicted RBP12.71□□□□□ -0.37
VPS25-205ENST00000590339 TNS3Q68CZ2 1445 aa12.71□□□□□ -0.37
VPS25-205ENST00000590339 CC2D1BQ5T0F9 858 aaKnown RBP12.71□□□□□ -0.37
VPS25-205ENST00000590339 NUTM2GQ5VZR2 741 aa12.71□□□□□ -0.37
VPS25-205ENST00000590339 FAM9BQ8IZU0 186 aa12.71□□□□□ -0.37
VPS25-205ENST00000590339 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS25-205ENST00000590339 KIF20BQ96Q89 1820 aa12.71□□□□□ -0.38
VPS25-205ENST00000590339 CD163L1Q9NR16 1453 aa12.71□□□□□ -0.38
VPS25-205ENST00000590339 TOPAZ1Q8N9V7 1692 aa12.7□□□□□ -0.38
VPS25-205ENST00000590339 FAM83GA6ND36 823 aa12.7□□□□□ -0.38
VPS25-205ENST00000590339 UNC5CLQ8IV45 518 aa12.7□□□□□ -0.38
VPS25-205ENST00000590339 GJD4Q96KN9 370 aaPredicted RBP12.7□□□□□ -0.38
VPS25-205ENST00000590339 CARD14Q9BXL6 1004 aa12.7□□□□□ -0.38
VPS25-205ENST00000590339 CCDC9Q9Y3X0 531 aaKnown RBP12.7□□□□□ -0.38
VPS25-205ENST00000590339 ARHGEF10O15013 1369 aa12.69□□□□□ -0.38
VPS25-205ENST00000590339 ACEP12821 1306 aa12.69□□□□□ -0.38
VPS25-205ENST00000590339 TMC1Q8TDI8 760 aa12.69□□□□□ -0.38
VPS25-205ENST00000590339 ATP7BP35670 1465 aa12.69□□□□□ -0.38
VPS25-205ENST00000590339 NSD2O96028 1365 aa12.69□□□□□ -0.38
VPS25-205ENST00000590339 MON2Q7Z3U7 1717 aa12.68□□□□□ -0.38
VPS25-205ENST00000590339 KIF1AQ12756 1690 aa12.68□□□□□ -0.38
VPS25-205ENST00000590339 BCL9LQ86UU0 1499 aa12.68□□□□□ -0.38
VPS25-205ENST00000590339 CNGB1Q14028 1251 aaPredicted RBP12.68□□□□□ -0.38
VPS25-205ENST00000590339 CABP1Q9NZU7 370 aa12.68□□□□□ -0.38
VPS25-205ENST00000590339 RGPD8O14715 1765 aaPredicted RBP12.68□□□□□ -0.38
VPS25-205ENST00000590339 AKAP12Q02952 1782 aa12.68□□□□□ -0.38
VPS25-205ENST00000590339 PLEKHG3A1L390 1219 aa12.67□□□□□ -0.38
VPS25-205ENST00000590339 PPP2R1AP30153 589 aa12.67□□□□□ -0.38
VPS25-205ENST00000590339 RGS12O14924 1447 aa12.67□□□□□ -0.38
VPS25-205ENST00000590339 A0A1W2PP64 1363 aa12.67□□□□□ -0.38
VPS25-205ENST00000590339 COL22A1Q8NFW1 1626 aaPredicted RBP12.66□□□□□ -0.38
VPS25-205ENST00000590339 ITSN1Q15811 1721 aa12.66□□□□□ -0.38
VPS25-205ENST00000590339 ATRNO75882 1429 aa12.66□□□□□ -0.38
VPS25-205ENST00000590339 ZC3H6P61129 1189 aaKnown RBP12.66□□□□□ -0.38
VPS25-205ENST00000590339 ABTB2Q8N961 1025 aa12.66□□□□□ -0.38
VPS25-205ENST00000590339 SLC12A5Q9H2X9 1139 aa12.66□□□□□ -0.38
VPS25-205ENST00000590339 BTG4Q9NY30 223 aa12.65□□□□□ -0.38
VPS25-205ENST00000590339 CDK12Q9NYV4 1490 aaPredicted RBP12.65□□□□□ -0.38
VPS25-205ENST00000590339 NRKQ7Z2Y5 1582 aa12.64□□□□□ -0.39
VPS25-205ENST00000590339 A0A0G2JS52 829 aa12.64□□□□□ -0.39
VPS25-205ENST00000590339 MYT1Q01538 1121 aa12.64□□□□□ -0.39
VPS25-205ENST00000590339 CHRNA2Q15822 529 aa12.64□□□□□ -0.39
VPS25-205ENST00000590339 VPS72Q15906 364 aa12.63□□□□□ -0.39
VPS25-205ENST00000590339 PRDM11Q9NQV5 511 aa12.63□□□□□ -0.39
VPS25-205ENST00000590339 PPIP5K1Q6PFW1 1433 aa12.62□□□□□ -0.39
VPS25-205ENST00000590339 SMG6Q86US8 1419 aaKnown RBP12.62□□□□□ -0.39
VPS25-205ENST00000590339 SLIT2O94813 1529 aa12.62□□□□□ -0.39
VPS25-205ENST00000590339 POLR3AO14802 1390 aaPredicted RBP12.62□□□□□ -0.39
VPS25-205ENST00000590339 SEPT12Q8IYM1 358 aa12.62□□□□□ -0.39
VPS25-205ENST00000590339 CGNL1Q0VF96 1302 aa12.62□□□□□ -0.39
VPS25-205ENST00000590339 ZBTB7CA1YPR0 619 aa12.61□□□□□ -0.39
VPS25-205ENST00000590339 STRN4Q9NRL3 753 aa12.61□□□□□ -0.39
VPS25-205ENST00000590339 CPSF1Q10570 1443 aaKnown RBP12.61□□□□□ -0.39
VPS25-205ENST00000590339 EVA1CP58658 441 aa12.6□□□□□ -0.39
VPS25-205ENST00000590339 NLRP6P59044 892 aa12.6□□□□□ -0.39
VPS25-205ENST00000590339 FAM98CQ17RN3 349 aaKnown RBP12.6□□□□□ -0.39
VPS25-205ENST00000590339 KIAA0232Q92628 1395 aa12.59□□□□□ -0.39
VPS25-205ENST00000590339 COL3A1P02461 1466 aaPredicted RBP12.59□□□□□ -0.39
VPS25-205ENST00000590339 GCP02774 474 aa12.58□□□□□ -0.4
VPS25-205ENST00000590339 TERF2IPQ9NYB0 399 aa12.58□□□□□ -0.4
VPS25-205ENST00000590339 USP35Q9P2H5 1018 aa12.58□□□□□ -0.4
VPS25-205ENST00000590339 EDC4Q6P2E9 1401 aaKnown RBP12.57□□□□□ -0.4
VPS25-205ENST00000590339 SOX12O15370 315 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms