RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 IQGAP1P46940 1657 aa13.21□□□□□ -0.29
SMAD4-209ENST00000589941 SAMD9LQ8IVG5 1584 aa13.21□□□□□ -0.29
SMAD4-209ENST00000589941 BHMG1C9JSJ3 638 aaPredicted RBP13.21□□□□□ -0.29
SMAD4-209ENST00000589941 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.29
SMAD4-209ENST00000589941 RANGAP1P46060 587 aaPredicted RBP13.21□□□□□ -0.29
SMAD4-209ENST00000589941 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
SMAD4-209ENST00000589941 SRCAPQ6ZRS2 3230 aa13.2□□□□□ -0.3
SMAD4-209ENST00000589941 FAM161AQ3B820 660 aa13.2□□□□□ -0.3
SMAD4-209ENST00000589941 EFCAB2Q5VUJ9 269 aa13.2□□□□□ -0.3
SMAD4-209ENST00000589941 MYT1LQ9UL68 1186 aa13.2□□□□□ -0.3
SMAD4-209ENST00000589941 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
SMAD4-209ENST00000589941 ZMYND10O75800 440 aa13.19□□□□□ -0.3
SMAD4-209ENST00000589941 LRRC7Q96NW7 1537 aa13.18□□□□□ -0.3
SMAD4-209ENST00000589941 SMAPO00193 183 aa13.18□□□□□ -0.3
SMAD4-209ENST00000589941 ZC3H13Q5T200 1668 aaKnown RBP13.18□□□□□ -0.3
SMAD4-209ENST00000589941 DEPDC5O75140 1603 aa13.17□□□□□ -0.3
SMAD4-209ENST00000589941 PACS2Q86VP3 889 aa13.17□□□□□ -0.3
SMAD4-209ENST00000589941 BARGINQ6ZT62 677 aa13.16□□□□□ -0.3
SMAD4-209ENST00000589941 SEPT9Q9UHD8 586 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-209ENST00000589941 SYCP2Q9BX26 1530 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 NUDT18Q6ZVK8 323 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 SPNS2Q8IVW8 549 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 TATDN2Q93075 761 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 PNMA3Q9UL41 463 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 ADGRG1Q9Y653 693 aa13.15□□□□□ -0.3
SMAD4-209ENST00000589941 ATP7AQ04656 1500 aa13.14□□□□□ -0.31
SMAD4-209ENST00000589941 TROQ12816 1431 aaPredicted RBP13.13□□□□□ -0.31
SMAD4-209ENST00000589941 ADGBQ8N7X0 1667 aa13.12□□□□□ -0.31
SMAD4-209ENST00000589941 ROBO1Q9Y6N7 1651 aa13.12□□□□□ -0.31
SMAD4-209ENST00000589941 NBPF26B4DH59 902 aa13.12□□□□□ -0.31
SMAD4-209ENST00000589941 MAP2K5Q13163 448 aa13.11□□□□□ -0.31
SMAD4-209ENST00000589941 MRPL50Q8N5N7 158 aaKnown RBP13.11□□□□□ -0.31
SMAD4-209ENST00000589941 EYA1Q99502 592 aa13.11□□□□□ -0.31
SMAD4-209ENST00000589941 NBPF3Q9H094 633 aa13.11□□□□□ -0.31
SMAD4-209ENST00000589941 TPRNQ4KMQ1 711 aa13.1□□□□□ -0.31
SMAD4-209ENST00000589941 MED14O60244 1454 aa13.1□□□□□ -0.31
SMAD4-209ENST00000589941 NPHP4O75161 1426 aaPredicted RBP13.09□□□□□ -0.31
SMAD4-209ENST00000589941 IRF6O14896 467 aa13.08□□□□□ -0.32
SMAD4-209ENST00000589941 MINK1Q8N4C8 1332 aaPredicted RBP13.08□□□□□ -0.32
SMAD4-209ENST00000589941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.07□□□□□ -0.32
SMAD4-209ENST00000589941 KRI1Q8N9T8 703 aaKnown RBP13.07□□□□□ -0.32
SMAD4-209ENST00000589941 CCDC102AQ96A19 550 aa13.07□□□□□ -0.32
SMAD4-209ENST00000589941 STAC3Q96MF2 364 aa13.07□□□□□ -0.32
SMAD4-209ENST00000589941 PHOX2BQ99453 314 aa13.07□□□□□ -0.32
SMAD4-209ENST00000589941 A2MP01023 1474 aa13.07□□□□□ -0.32
SMAD4-209ENST00000589941 FAM98CQ17RN3 349 aaKnown RBP13.06□□□□□ -0.32
SMAD4-209ENST00000589941 LAPTM4BQ86VI4 370 aa13.06□□□□□ -0.32
SMAD4-209ENST00000589941 PXYLP1Q8TE99 480 aa13.06□□□□□ -0.32
SMAD4-209ENST00000589941 METTL3Q86U44 580 aaKnown RBP13.05□□□□□ -0.32
SMAD4-209ENST00000589941 RBM46Q8TBY0 533 aaKnown RBP13.05□□□□□ -0.32
SMAD4-209ENST00000589941 SLC24A3Q9HC58 644 aa13.05□□□□□ -0.32
SMAD4-209ENST00000589941 UGGT1Q9NYU2 1555 aa13.05□□□□□ -0.32
SMAD4-209ENST00000589941 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
SMAD4-209ENST00000589941 CLIP1P30622 1438 aa13.05□□□□□ -0.32
SMAD4-209ENST00000589941 PRKCSHP14314 528 aaPredicted RBP13.04□□□□□ -0.32
SMAD4-209ENST00000589941 ZFRQ96KR1 1074 aaKnown RBP13.04□□□□□ -0.32
SMAD4-209ENST00000589941 TNRQ92752 1358 aa13.04□□□□□ -0.32
SMAD4-209ENST00000589941 OATP04181 439 aa13.03□□□□□ -0.32
SMAD4-209ENST00000589941 NLRP7Q8WX94 980 aa13.03□□□□□ -0.32
SMAD4-209ENST00000589941 PZPP20742 1482 aa13.03□□□□□ -0.32
SMAD4-209ENST00000589941 RCCD1A6NED2 376 aa13.02□□□□□ -0.33
SMAD4-209ENST00000589941 LRP6O75581 1613 aa13.02□□□□□ -0.33
SMAD4-209ENST00000589941 UBR1Q8IWV7 1749 aa13.02□□□□□ -0.33
SMAD4-209ENST00000589941 KDM5DQ9BY66 1539 aa13.01□□□□□ -0.33
SMAD4-209ENST00000589941 GOLGA8CPA6NN73 597 aa13□□□□□ -0.33
SMAD4-209ENST00000589941 MMRN1Q13201 1228 aa13□□□□□ -0.33
SMAD4-209ENST00000589941 FBXO31Q5XUX0 539 aaPredicted RBP13□□□□□ -0.33
SMAD4-209ENST00000589941 MAP3K1Q13233 1512 aa12.99□□□□□ -0.33
SMAD4-209ENST00000589941 ARHGAP35Q9NRY4 1499 aa12.99□□□□□ -0.33
SMAD4-209ENST00000589941 GGT6Q6P531 493 aa12.99□□□□□ -0.33
SMAD4-209ENST00000589941 WNT2BQ93097 391 aa12.99□□□□□ -0.33
SMAD4-209ENST00000589941 KCTD12Q96CX2 325 aaKnown RBP12.99□□□□□ -0.33
SMAD4-209ENST00000589941 ATP1B4Q9UN42 357 aaPredicted RBP12.99□□□□□ -0.33
SMAD4-209ENST00000589941 COL16A1Q07092 1604 aaPredicted RBP12.99□□□□□ -0.33
SMAD4-209ENST00000589941 SAMD7Q7Z3H4 446 aa12.98□□□□□ -0.33
SMAD4-209ENST00000589941 FAM135AQ9P2D6 1515 aa12.98□□□□□ -0.33
SMAD4-209ENST00000589941 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
SMAD4-209ENST00000589941 SPAG9O60271 1321 aaKnown RBP12.97□□□□□ -0.33
SMAD4-209ENST00000589941 DNAJB2P25686 324 aa12.97□□□□□ -0.33
SMAD4-209ENST00000589941 NLRP1Q9C000 1473 aa12.97□□□□□ -0.33
SMAD4-209ENST00000589941 FAM135BQ49AJ0 1406 aa12.96□□□□□ -0.33
SMAD4-209ENST00000589941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.96□□□□□ -0.33
SMAD4-209ENST00000589941 BCAMP50895 628 aa12.96□□□□□ -0.33
SMAD4-209ENST00000589941 SWT1Q5T5J6 900 aaKnown RBP12.96□□□□□ -0.33
SMAD4-209ENST00000589941 ANKLE2Q86XL3 938 aa12.96□□□□□ -0.33
SMAD4-209ENST00000589941 RNF166Q96A37 237 aaPredicted RBP12.96□□□□□ -0.33
SMAD4-209ENST00000589941 AK7Q96M32 723 aa12.96□□□□□ -0.33
SMAD4-209ENST00000589941 TMEM134Q9H6X4 195 aa12.95□□□□□ -0.34
SMAD4-209ENST00000589941 CFAP65Q6ZU64 1925 aaKnown RBP12.94□□□□□ -0.34
SMAD4-209ENST00000589941 TRIM66O15016 1216 aa12.94□□□□□ -0.34
SMAD4-209ENST00000589941 ANKK1Q8NFD2 765 aa12.94□□□□□ -0.34
SMAD4-209ENST00000589941 TRIM52Q96A61 297 aa12.94□□□□□ -0.34
SMAD4-209ENST00000589941 THSD4Q6ZMP0 1018 aa12.93□□□□□ -0.34
SMAD4-209ENST00000589941 SETBP1Q9Y6X0 1596 aa12.93□□□□□ -0.34
SMAD4-209ENST00000589941 GPATCH8Q9UKJ3 1502 aaKnown RBP12.93□□□□□ -0.34
SMAD4-209ENST00000589941 SHPRHQ149N8 1683 aa12.93□□□□□ -0.34
SMAD4-209ENST00000589941 SOWAHBA6NEL2 793 aa12.92□□□□□ -0.34
SMAD4-209ENST00000589941 CEP152O94986 1710 aa12.92□□□□□ -0.34
SMAD4-209ENST00000589941 HNRNPMP52272 730 aaKnown RBP eCLIP12.92□□□□□ -0.34
SMAD4-209ENST00000589941 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms