RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 TRAK1Q9UPV9 953 aa13.25□□□□□ -0.29
VPS25-202ENST00000589219 DLC1Q96QB1 1528 aa13.24□□□□□ -0.29
VPS25-202ENST00000589219 NSD3Q9BZ95 1437 aa13.24□□□□□ -0.29
VPS25-202ENST00000589219 EVC2Q86UK5 1308 aa13.24□□□□□ -0.29
VPS25-202ENST00000589219 WDR43Q15061 677 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS25-202ENST00000589219 TSHZ2Q9NRE2 1034 aa13.23□□□□□ -0.29
VPS25-202ENST00000589219 ANKRD36BQ8N2N9 1353 aa13.22□□□□□ -0.29
VPS25-202ENST00000589219 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
VPS25-202ENST00000589219 PNPLA6Q8IY17 1366 aa13.21□□□□□ -0.29
VPS25-202ENST00000589219 RXRBP28702 533 aa13.21□□□□□ -0.29
VPS25-202ENST00000589219 IRX6P78412 446 aaPredicted RBP13.21□□□□□ -0.29
VPS25-202ENST00000589219 DDX17Q92841 729 aaKnown RBP13.21□□□□□ -0.29
VPS25-202ENST00000589219 POLR3AO14802 1390 aaPredicted RBP13.2□□□□□ -0.3
VPS25-202ENST00000589219 ATAD2Q6PL18 1390 aa13.2□□□□□ -0.3
VPS25-202ENST00000589219 CDC42BPGQ6DT37 1551 aa13.2□□□□□ -0.3
VPS25-202ENST00000589219 AFF2P51816 1311 aa13.2□□□□□ -0.3
VPS25-202ENST00000589219 TMEM132EQ6IEE7 984 aa13.2□□□□□ -0.3
VPS25-202ENST00000589219 ORAI2Q96SN7 254 aa13.2□□□□□ -0.3
VPS25-202ENST00000589219 SOS2Q07890 1332 aaPredicted RBP13.19□□□□□ -0.3
VPS25-202ENST00000589219 STK26Q9P289 416 aa13.19□□□□□ -0.3
VPS25-202ENST00000589219 TECPR2O15040 1411 aa13.19□□□□□ -0.3
VPS25-202ENST00000589219 KNDC1Q76NI1 1749 aa13.19□□□□□ -0.3
VPS25-202ENST00000589219 ABCC11Q96J66 1382 aa13.19□□□□□ -0.3
VPS25-202ENST00000589219 CGNL1Q0VF96 1302 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 NPHP3Q7Z494 1330 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 CDK12Q9NYV4 1490 aaPredicted RBP13.18□□□□□ -0.3
VPS25-202ENST00000589219 ESCO1Q5FWF5 840 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 C8orf37Q96NL8 207 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 CARD14Q9BXL6 1004 aa13.18□□□□□ -0.3
VPS25-202ENST00000589219 RRP1P56182 461 aaKnown RBP13.16□□□□□ -0.3
VPS25-202ENST00000589219 NGLY1Q96IV0 654 aa13.16□□□□□ -0.3
VPS25-202ENST00000589219 ADAMTS8Q9UP79 889 aa13.16□□□□□ -0.3
VPS25-202ENST00000589219 ADAMTS2O95450 1211 aa13.15□□□□□ -0.3
VPS25-202ENST00000589219 WAPLQ7Z5K2 1190 aa13.15□□□□□ -0.3
VPS25-202ENST00000589219 SIRT1Q96EB6 747 aa13.15□□□□□ -0.3
VPS25-202ENST00000589219 QTRT2Q9H974 415 aaKnown RBP13.15□□□□□ -0.3
VPS25-202ENST00000589219 RCAN3Q9UKA8 241 aa13.15□□□□□ -0.3
VPS25-202ENST00000589219 ANKRD26Q9UPS8 1709 aa13.15□□□□□ -0.3
VPS25-202ENST00000589219 COL22A1Q8NFW1 1626 aaPredicted RBP13.14□□□□□ -0.31
VPS25-202ENST00000589219 RBM6P78332 1123 aaKnown RBP13.14□□□□□ -0.31
VPS25-202ENST00000589219 ZNF521Q96K83 1311 aa13.13□□□□□ -0.31
VPS25-202ENST00000589219 MORC1Q86VD1 984 aa13.13□□□□□ -0.31
VPS25-202ENST00000589219 FMN2Q9NZ56 1722 aa13.13□□□□□ -0.31
VPS25-202ENST00000589219 KIF1AQ12756 1690 aa13.12□□□□□ -0.31
VPS25-202ENST00000589219 ATP7BP35670 1465 aa13.12□□□□□ -0.31
VPS25-202ENST00000589219 PLEKHH1Q9ULM0 1364 aa13.12□□□□□ -0.31
VPS25-202ENST00000589219 FOXO3O43524 673 aa13.12□□□□□ -0.31
VPS25-202ENST00000589219 UPF1Q92900 1129 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS25-202ENST00000589219 SLC12A5Q9H2X9 1139 aa13.12□□□□□ -0.31
VPS25-202ENST00000589219 PXDNQ92626 1479 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 A0A1W2PP64 1363 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 NUTM2FA1L443 756 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 PRAM1Q96QH2 718 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 POGKQ9P215 609 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 USP21Q9UK80 565 aa13.11□□□□□ -0.31
VPS25-202ENST00000589219 MARF1Q9Y4F3 1742 aaKnown RBP13.1□□□□□ -0.31
VPS25-202ENST00000589219 CFAP53Q96M91 514 aa13.1□□□□□ -0.31
VPS25-202ENST00000589219 TRPC5Q9UL62 973 aaPredicted RBP13.1□□□□□ -0.31
VPS25-202ENST00000589219 DCAF8L1A6NGE4 600 aa13.09□□□□□ -0.31
VPS25-202ENST00000589219 SRPK2P78362 688 aaKnown RBP13.09□□□□□ -0.31
VPS25-202ENST00000589219 FNBP4Q8N3X1 1017 aaPredicted RBP13.09□□□□□ -0.31
VPS25-202ENST00000589219 CABP2Q9NPB3 220 aa13.09□□□□□ -0.31
VPS25-202ENST00000589219 TERF2IPQ9NYB0 399 aa13.09□□□□□ -0.31
VPS25-202ENST00000589219 SALL2Q9Y467 1007 aaPredicted RBP13.09□□□□□ -0.31
VPS25-202ENST00000589219 CD163L1Q9NR16 1453 aa13.09□□□□□ -0.31
VPS25-202ENST00000589219 RGPD8O14715 1765 aaPredicted RBP13.08□□□□□ -0.32
VPS25-202ENST00000589219 XPCQ01831 940 aaPredicted RBP13.08□□□□□ -0.32
VPS25-202ENST00000589219 GOLGA2Q08379 1002 aa13.08□□□□□ -0.32
VPS25-202ENST00000589219 B4GALNT3Q6L9W6 998 aa13.08□□□□□ -0.32
VPS25-202ENST00000589219 KIF20BQ96Q89 1820 aa13.08□□□□□ -0.32
VPS25-202ENST00000589219 RGS12O14924 1447 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 SENP3-EIF4A1A0A087X0R7 540 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 PSME1Q06323 249 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 NCBP3Q53F19 620 aaKnown RBP13.07□□□□□ -0.32
VPS25-202ENST00000589219 CDCA7LQ96GN5 454 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 CCDC136Q96JN2 1154 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 MINK1Q8N4C8 1332 aaPredicted RBP13.07□□□□□ -0.32
VPS25-202ENST00000589219 ADGRB2O60241 1585 aa13.07□□□□□ -0.32
VPS25-202ENST00000589219 KRT28Q7Z3Y7 464 aa13.06□□□□□ -0.32
VPS25-202ENST00000589219 HDGFL2Q7Z4V5 671 aaPredicted RBP13.06□□□□□ -0.32
VPS25-202ENST00000589219 PHF8Q9UPP1 1060 aa13.06□□□□□ -0.32
VPS25-202ENST00000589219 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
VPS25-202ENST00000589219 SAFB2Q14151 953 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS25-202ENST00000589219 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
VPS25-202ENST00000589219 ATRNO75882 1429 aa13.05□□□□□ -0.32
VPS25-202ENST00000589219 COL3A1P02461 1466 aaPredicted RBP13.04□□□□□ -0.32
VPS25-202ENST00000589219 E9PSI1 815 aa13.04□□□□□ -0.32
VPS25-202ENST00000589219 SLFN5Q08AF3 891 aa13.04□□□□□ -0.32
VPS25-202ENST00000589219 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
VPS25-202ENST00000589219 CCDC146Q8IYE0 955 aa13.03□□□□□ -0.32
VPS25-202ENST00000589219 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
VPS25-202ENST00000589219 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.03□□□□□ -0.32
VPS25-202ENST00000589219 RUNDC1Q96C34 613 aa13.03□□□□□ -0.32
VPS25-202ENST00000589219 RNF39Q9H2S5 420 aa13.03□□□□□ -0.32
VPS25-202ENST00000589219 ANKARQ7Z5J8 1434 aa13.03□□□□□ -0.32
VPS25-202ENST00000589219 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.02□□□□□ -0.32
VPS25-202ENST00000589219 APAF1O14727 1248 aa13.02□□□□□ -0.33
VPS25-202ENST00000589219 CDK19Q9BWU1 502 aa13.02□□□□□ -0.33
VPS25-202ENST00000589219 SBNO1A3KN83 1393 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms