RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 RIMS2Q9UQ26 1411 aa6.42□□□□□ -1.38
LIG3-211ENST00000588713 RPRD2Q5VT52 1461 aaKnown RBP6.41□□□□□ -1.38
LIG3-211ENST00000588713 CCDC141Q6ZP82 1450 aa6.41□□□□□ -1.38
LIG3-211ENST00000588713 ADAMTS13Q76LX8 1427 aa6.41□□□□□ -1.38
LIG3-211ENST00000588713 EHBP1L1Q8N3D4 1523 aa6.4□□□□□ -1.38
LIG3-211ENST00000588713 POTEB2H3BUK9 544 aa6.4□□□□□ -1.38
LIG3-211ENST00000588713 HDGFP51858 240 aaKnown RBP6.4□□□□□ -1.38
LIG3-211ENST00000588713 TRIM26Q12899 539 aaPredicted RBP6.4□□□□□ -1.38
LIG3-211ENST00000588713 ANO8Q9HCE9 1232 aaPredicted RBP6.4□□□□□ -1.38
LIG3-211ENST00000588713 MTUS2Q5JR59 1369 aa6.4□□□□□ -1.39
LIG3-211ENST00000588713 PIK3R4Q99570 1358 aa6.4□□□□□ -1.39
LIG3-211ENST00000588713 ZFYVE9O95405 1425 aa6.4□□□□□ -1.39
LIG3-211ENST00000588713 ARHGAP31Q2M1Z3 1444 aa6.4□□□□□ -1.39
LIG3-211ENST00000588713 TMEM131LA2VDJ0 1609 aa6.39□□□□□ -1.39
LIG3-211ENST00000588713 HTRA3P83110 453 aa6.39□□□□□ -1.39
LIG3-211ENST00000588713 FAM196AQ6ZSG2 479 aa6.39□□□□□ -1.39
LIG3-211ENST00000588713 OTUD5Q96G74 571 aa6.39□□□□□ -1.39
LIG3-211ENST00000588713 AATKQ6ZMQ8 1374 aa6.39□□□□□ -1.39
LIG3-211ENST00000588713 ATMINO43313 823 aaPredicted RBP6.38□□□□□ -1.39
LIG3-211ENST00000588713 CHGAP10645 457 aaKnown RBP6.38□□□□□ -1.39
LIG3-211ENST00000588713 ASTLQ6HA08 431 aaPredicted RBP6.38□□□□□ -1.39
LIG3-211ENST00000588713 PLCD3Q8N3E9 789 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 KLRG1Q96E93 195 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 ARXQ96QS3 562 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 METRNQ9UJH8 293 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 CCDC61Q9Y6R9 512 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 NPHP3Q7Z494 1330 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 LAMC1P11047 1609 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 USP32Q8NFA0 1604 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 CASZ1Q86V15 1759 aa6.38□□□□□ -1.39
LIG3-211ENST00000588713 TSPY4P0CV99 314 aa6.37□□□□□ -1.39
LIG3-211ENST00000588713 TSPY10P0CW01 314 aa6.37□□□□□ -1.39
LIG3-211ENST00000588713 C7P10643 843 aa6.37□□□□□ -1.39
LIG3-211ENST00000588713 JMYQ8N9B5 988 aa6.37□□□□□ -1.39
LIG3-211ENST00000588713 SLC39A7Q92504 469 aa6.37□□□□□ -1.39
LIG3-211ENST00000588713 NALCNQ8IZF0 1738 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 PLCH1Q4KWH8 1693 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 FOXO3O43524 673 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 ESCO1Q5FWF5 840 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 CABLES1Q8TDN4 633 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 KIF12Q96FN5 646 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 BCL11BQ9C0K0 894 aaPredicted RBP6.36□□□□□ -1.39
LIG3-211ENST00000588713 PTPN23Q9H3S7 1636 aa6.36□□□□□ -1.39
LIG3-211ENST00000588713 EIF2AK4Q9P2K8 1649 aaKnown RBP6.36□□□□□ -1.39
LIG3-211ENST00000588713 ADGRL2O95490 1459 aa6.35□□□□□ -1.39
LIG3-211ENST00000588713 PXDNQ92626 1479 aa6.35□□□□□ -1.39
LIG3-211ENST00000588713 FYCO1Q9BQS8 1478 aa6.35□□□□□ -1.39
LIG3-211ENST00000588713 HSPA1AP0DMV8 641 aaKnown RBP6.35□□□□□ -1.39
LIG3-211ENST00000588713 HSPA1BP0DMV9 641 aaKnown RBP6.35□□□□□ -1.39
LIG3-211ENST00000588713 RASEFQ8IZ41 740 aa6.35□□□□□ -1.39
LIG3-211ENST00000588713 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIG3-211ENST00000588713 CASKIN1Q8WXD9 1431 aa6.34□□□□□ -1.39
LIG3-211ENST00000588713 KIF3CO14782 793 aa6.34□□□□□ -1.39
LIG3-211ENST00000588713 MTFR1LQ9H019 292 aa6.34□□□□□ -1.39
LIG3-211ENST00000588713 SLC52A1Q9NWF4 448 aa6.34□□□□□ -1.39
LIG3-211ENST00000588713 BTG4Q9NY30 223 aa6.34□□□□□ -1.39
LIG3-211ENST00000588713 ABCC5O15440 1437 aa6.33□□□□□ -1.4
LIG3-211ENST00000588713 XRN1Q8IZH2 1706 aaKnown RBP6.33□□□□□ -1.4
LIG3-211ENST00000588713 GOLGB1Q14789 3259 aaKnown RBP6.33□□□□□ -1.4
LIG3-211ENST00000588713 MAP3K13O43283 966 aa6.33□□□□□ -1.4
LIG3-211ENST00000588713 GRIN3BO60391 1043 aa6.33□□□□□ -1.4
LIG3-211ENST00000588713 YBX3P16989 372 aaKnown RBP eCLIP6.33□□□□□ -1.4
LIG3-211ENST00000588713 UBTFP17480 764 aaKnown RBP6.33□□□□□ -1.4
LIG3-211ENST00000588713 ATN1P54259 1190 aaPredicted RBP6.33□□□□□ -1.4
LIG3-211ENST00000588713 SGIP1Q9BQI5 828 aa6.33□□□□□ -1.4
LIG3-211ENST00000588713 NWD2Q9ULI1 1742 aa6.33□□□□□ -1.4
LIG3-211ENST00000588713 KANK1Q14678 1352 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 MAP3K5Q99683 1374 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 MYO5BQ9ULV0 1848 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 MLLT1Q03111 559 aaPredicted RBP6.32□□□□□ -1.4
LIG3-211ENST00000588713 PDE3BQ13370 1112 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 RSPH4AQ5TD94 716 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 LMOD2Q6P5Q4 547 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 NLGN2Q8NFZ4 835 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 PLSCR2Q9NRY7 297 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 STK32BQ9NY57 414 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 ZBTB47Q9UFB7 747 aaPredicted RBP6.32□□□□□ -1.4
LIG3-211ENST00000588713 WDR90Q96KV7 1748 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 GCC2Q8IWJ2 1684 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 THSD7AQ9UPZ6 1657 aa6.32□□□□□ -1.4
LIG3-211ENST00000588713 SPATA31A5Q5VU36 1347 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 SPATA31A3Q5VYP0 1347 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 SPATA31A7Q8IWB4 1347 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 NEXMIFQ5QGS0 1516 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 NUTM2FA1L443 756 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 FKBP8Q14318 412 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 MAMSTRQ6ZN01 415 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 METP08581 1390 aa6.31□□□□□ -1.4
LIG3-211ENST00000588713 LRPPRCP42704 1394 aaKnown RBP6.31□□□□□ -1.4
LIG3-211ENST00000588713 BMP2KQ9NSY1 1161 aaPredicted RBP6.3□□□□□ -1.4
LIG3-211ENST00000588713 USP35Q9P2H5 1018 aa6.3□□□□□ -1.4
LIG3-211ENST00000588713 TRPC6Q9Y210 931 aa6.3□□□□□ -1.4
LIG3-211ENST00000588713 NRAPQ86VF7 1730 aa6.3□□□□□ -1.4
LIG3-211ENST00000588713 ADCY9O60503 1353 aa6.3□□□□□ -1.4
LIG3-211ENST00000588713 TOMM70O94826 608 aa6.29□□□□□ -1.4
LIG3-211ENST00000588713 USP19O94966 1318 aa6.28□□□□□ -1.4
LIG3-211ENST00000588713 POTEJP0CG39 1038 aa6.28□□□□□ -1.4
LIG3-211ENST00000588713 TIE1P35590 1138 aa6.28□□□□□ -1.4
LIG3-211ENST00000588713 SLC15A2Q16348 729 aa6.28□□□□□ -1.4
LIG3-211ENST00000588713 DUOX2Q9NRD8 1548 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms