RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CAMSAP1Q5T5Y3 1602 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 EFCAB6Q5THR3 1501 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 ARHGAP33O14559 1287 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 PTPREP23469 700 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 MLLT3P42568 568 aaPredicted RBP7.7□□□□□ -1.18
LIG3-210ENST00000588109 KCNK17Q96T54 332 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 BCL2L12Q9HB09 334 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 CLSPNQ9HAW4 1339 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 E9PCH4 1651 aa7.7□□□□□ -1.18
LIG3-210ENST00000588109 FER1L4A9Z1Z3 1794 aa7.69□□□□□ -1.18
LIG3-210ENST00000588109 TESPA1A2RU30 521 aaPredicted RBP7.69□□□□□ -1.18
LIG3-210ENST00000588109 ADAM33Q9BZ11 813 aa7.69□□□□□ -1.18
LIG3-210ENST00000588109 CNTLNQ9NXG0 1405 aa7.69□□□□□ -1.18
LIG3-210ENST00000588109 NEUROD1Q13562 356 aa7.68□□□□□ -1.18
LIG3-210ENST00000588109 BCANQ96GW7 911 aa7.68□□□□□ -1.18
LIG3-210ENST00000588109 AXIN2Q9Y2T1 843 aa7.68□□□□□ -1.18
LIG3-210ENST00000588109 RPRD2Q5VT52 1461 aaKnown RBP7.68□□□□□ -1.18
LIG3-210ENST00000588109 SPHKAPQ2M3C7 1700 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 OSBPP22059 807 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 EN1Q05925 392 aaPredicted RBP7.67□□□□□ -1.18
LIG3-210ENST00000588109 C6orf132Q5T0Z8 1188 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 SIN3AQ96ST3 1273 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 ANKRD30BQ9BXX2 1392 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 CCDC144AA2RUR9 1427 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 NPATQ14207 1427 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 MADDQ8WXG6 1647 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 MROH2AA6NES4 1674 aa7.67□□□□□ -1.18
LIG3-210ENST00000588109 NUTM2FA1L443 756 aa7.66□□□□□ -1.18
LIG3-210ENST00000588109 ZEB1P37275 1124 aaPredicted RBP7.66□□□□□ -1.18
LIG3-210ENST00000588109 ANKRD13DQ6ZTN6 518 aa7.66□□□□□ -1.18
LIG3-210ENST00000588109 ZMYM3Q14202 1370 aa7.66□□□□□ -1.18
LIG3-210ENST00000588109 ARHGAP31Q2M1Z3 1444 aa7.66□□□□□ -1.18
LIG3-210ENST00000588109 RIMS1Q86UR5 1692 aaKnown RBP7.66□□□□□ -1.18
LIG3-210ENST00000588109 TRPM2O94759 1503 aa7.65□□□□□ -1.18
LIG3-210ENST00000588109 PSEN2P49810 448 aa7.65□□□□□ -1.18
LIG3-210ENST00000588109 CFAP65Q6ZU64 1925 aaKnown RBP7.65□□□□□ -1.18
LIG3-210ENST00000588109 STAC3Q96MF2 364 aa7.65□□□□□ -1.18
LIG3-210ENST00000588109 ADAMTSL3P82987 1691 aa7.64□□□□□ -1.19
LIG3-210ENST00000588109 PREX1Q8TCU6 1659 aa7.64□□□□□ -1.19
LIG3-210ENST00000588109 ERVK-7P63135 1459 aa7.64□□□□□ -1.19
LIG3-210ENST00000588109 PTPRTO14522 1441 aa7.64□□□□□ -1.19
LIG3-210ENST00000588109 TONSLQ96HA7 1378 aa7.64□□□□□ -1.19
LIG3-210ENST00000588109 FBXO31Q5XUX0 539 aaPredicted RBP7.64□□□□□ -1.19
LIG3-210ENST00000588109 C3P01024 1663 aa7.63□□□□□ -1.19
LIG3-210ENST00000588109 PLA2R1Q13018 1463 aa7.63□□□□□ -1.19
LIG3-210ENST00000588109 CEBPAP49715 358 aaPredicted RBP7.63□□□□□ -1.19
LIG3-210ENST00000588109 LSM11P83369 360 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIG3-210ENST00000588109 CERKQ8TCT0 537 aa7.63□□□□□ -1.19
LIG3-210ENST00000588109 CLTCL1P53675 1640 aa7.63□□□□□ -1.19
LIG3-210ENST00000588109 UGGT1Q9NYU2 1555 aa7.63□□□□□ -1.19
LIG3-210ENST00000588109 NOS1P29475 1434 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 TNRQ92752 1358 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 PPP1R3GB7ZBB8 358 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 TSR1Q2NL82 804 aaKnown RBP7.62□□□□□ -1.19
LIG3-210ENST00000588109 SLC52A1Q9NWF4 448 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 SYNMO15061 1565 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 SPATA31D1Q6ZQQ2 1576 aa7.62□□□□□ -1.19
LIG3-210ENST00000588109 RGL3Q3MIN7 710 aa7.61□□□□□ -1.19
LIG3-210ENST00000588109 RBM26Q5T8P6 1007 aaKnown RBP7.61□□□□□ -1.19
LIG3-210ENST00000588109 KIF1BO60333 1816 aa7.61□□□□□ -1.19
LIG3-210ENST00000588109 ZNF326Q5BKZ1 582 aaKnown RBP7.6□□□□□ -1.19
LIG3-210ENST00000588109 DMRTA1Q5VZB9 504 aa7.6□□□□□ -1.19
LIG3-210ENST00000588109 POTEEQ6S8J3 1075 aa7.6□□□□□ -1.19
LIG3-210ENST00000588109 TIMELESSQ9UNS1 1208 aa7.6□□□□□ -1.19
LIG3-210ENST00000588109 PTPRMP28827 1452 aa7.6□□□□□ -1.19
LIG3-210ENST00000588109 PIK3C2BO00750 1634 aa7.6□□□□□ -1.19
LIG3-210ENST00000588109 TK2O00142 265 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 COL9A1P20849 921 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 PRIM1P49642 420 aaKnown RBP7.59□□□□□ -1.19
LIG3-210ENST00000588109 IDI1Q13907 227 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 L3MBTL2Q969R5 705 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 KRTAP3-3Q9BYR6 98 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 KRTAP3-2Q9BYR7 98 aa7.59□□□□□ -1.19
LIG3-210ENST00000588109 NLRP1Q9C000 1473 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 FCHSD2O94868 740 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 PACS2Q86VP3 889 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 GPIHBP1Q8IV16 184 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 DCAF11Q8TEB1 546 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 SPATA31E1Q6ZUB1 1445 aa7.58□□□□□ -1.2
LIG3-210ENST00000588109 ADGRB3O60242 1522 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 MYO3AQ8NEV4 1616 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 ADGRD1Q6QNK2 874 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIG3-210ENST00000588109 ZBED2Q9BTP6 218 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 SLC4A5Q9BY07 1137 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 CDHR5Q9HBB8 845 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 VPS9D1Q9Y2B5 631 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 NEURL4Q96JN8 1562 aa7.57□□□□□ -1.2
LIG3-210ENST00000588109 TMEM131LA2VDJ0 1609 aa7.56□□□□□ -1.2
LIG3-210ENST00000588109 PRSS12P56730 875 aa7.56□□□□□ -1.2
LIG3-210ENST00000588109 LMOD2Q6P5Q4 547 aa7.56□□□□□ -1.2
LIG3-210ENST00000588109 MYO5BQ9ULV0 1848 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 GOLGA8CPA6NN73 597 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 ONECUT3O60422 494 aaPredicted RBP7.55□□□□□ -1.2
LIG3-210ENST00000588109 PPP1R15AO75807 674 aaPredicted RBP7.55□□□□□ -1.2
LIG3-210ENST00000588109 PROX2Q3B8N5 592 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 CDCA7LQ96GN5 454 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 NBPF3Q9H094 633 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 UBR1Q8IWV7 1749 aa7.55□□□□□ -1.2
LIG3-210ENST00000588109 A2ML1A8K2U0 1454 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms