RNA–Protein interactions for RNA: ENST00000587730.5

DDX39A-206, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,813 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-206ENST00000587730 IL27Q8NEV9 243 aa23.59■■□□□ 1.37
DDX39A-206ENST00000587730 CLTCQ00610 1675 aaKnown RBP23.59■■□□□ 1.37
DDX39A-206ENST00000587730 ZNF428Q96B54 188 aa23.58■■□□□ 1.37
DDX39A-206ENST00000587730 PLEKHF1Q96S99 279 aa23.58■■□□□ 1.37
DDX39A-206ENST00000587730 SIGLEC1Q9BZZ2 1709 aa23.58■■□□□ 1.36
DDX39A-206ENST00000587730 IPO8O15397 1037 aaKnown RBP23.57■■□□□ 1.36
DDX39A-206ENST00000587730 TMPOP42166 694 aaKnown RBP23.57■■□□□ 1.36
DDX39A-206ENST00000587730 KIF16BQ96L93 1317 aa23.57■■□□□ 1.36
DDX39A-206ENST00000587730 ARHGEF40Q8TER5 1519 aa23.57■■□□□ 1.36
DDX39A-206ENST00000587730 SEC24BO95487 1268 aa23.56■■□□□ 1.36
DDX39A-206ENST00000587730 SMC4Q9NTJ3 1288 aa23.56■■□□□ 1.36
DDX39A-206ENST00000587730 CHMP4BQ9H444 224 aaKnown RBP23.55■■□□□ 1.36
DDX39A-206ENST00000587730 CABP2Q9NPB3 220 aa23.55■■□□□ 1.36
DDX39A-206ENST00000587730 ATF7IPQ6VMQ6 1270 aa23.54■■□□□ 1.36
DDX39A-206ENST00000587730 SRPK2P78362 688 aaKnown RBP23.54■■□□□ 1.36
DDX39A-206ENST00000587730 BCL2L13Q9BXK5 485 aa23.54■■□□□ 1.36
DDX39A-206ENST00000587730 PNPLA6Q8IY17 1366 aa23.54■■□□□ 1.36
DDX39A-206ENST00000587730 PTPRMP28827 1452 aa23.53■■□□□ 1.36
DDX39A-206ENST00000587730 ALDH1L2Q3SY69 923 aa23.53■■□□□ 1.36
DDX39A-206ENST00000587730 HDGFL2Q7Z4V5 671 aaPredicted RBP23.53■■□□□ 1.36
DDX39A-206ENST00000587730 ANTXR1Q9H6X2 564 aa23.53■■□□□ 1.36
DDX39A-206ENST00000587730 CDC42BPGQ6DT37 1551 aa23.53■■□□□ 1.36
DDX39A-206ENST00000587730 U2SURPO15042 1029 aaKnown RBP23.51■■□□□ 1.35
DDX39A-206ENST00000587730 EXOSC9Q06265 439 aaKnown RBP23.51■■□□□ 1.35
DDX39A-206ENST00000587730 TRIM35Q9UPQ4 493 aa23.51■■□□□ 1.35
DDX39A-206ENST00000587730 IDI1Q13907 227 aa23.5■■□□□ 1.35
DDX39A-206ENST00000587730 L1TD1Q5T7N2 865 aaKnown RBP23.5■■□□□ 1.35
DDX39A-206ENST00000587730 CFAP65Q6ZU64 1925 aaKnown RBP23.5■■□□□ 1.35
DDX39A-206ENST00000587730 DIAPH1O60610 1272 aaKnown RBP23.49■■□□□ 1.35
DDX39A-206ENST00000587730 TRIM27P14373 513 aa23.49■■□□□ 1.35
DDX39A-206ENST00000587730 BRPF1P55201 1214 aaPredicted RBP23.49■■□□□ 1.35
DDX39A-206ENST00000587730 SMC5Q8IY18 1101 aa23.49■■□□□ 1.35
DDX39A-206ENST00000587730 CALD1Q05682 793 aaKnown RBP23.49■■□□□ 1.35
DDX39A-206ENST00000587730 TNNQ9UQP3 1299 aa23.49■■□□□ 1.35
DDX39A-206ENST00000587730 YTHDC2Q9H6S0 1430 aaKnown RBP23.48■■□□□ 1.35
DDX39A-206ENST00000587730 TMEM131LA2VDJ0 1609 aa23.48■■□□□ 1.35
DDX39A-206ENST00000587730 FCHSD2O94868 740 aa23.48■■□□□ 1.35
DDX39A-206ENST00000587730 FYB1O15117 783 aa23.47■■□□□ 1.35
DDX39A-206ENST00000587730 SSH1Q8WYL5 1049 aa23.47■■□□□ 1.35
DDX39A-206ENST00000587730 TBC1D2Q9BYX2 928 aa23.47■■□□□ 1.35
DDX39A-206ENST00000587730 REREQ9P2R6 1566 aa23.47■■□□□ 1.35
DDX39A-206ENST00000587730 PPIP5K1Q6PFW1 1433 aa23.47■■□□□ 1.35
DDX39A-206ENST00000587730 ITPRIPQ8IWB1 547 aa23.46■■□□□ 1.35
DDX39A-206ENST00000587730 TSR2Q969E8 191 aaKnown RBP23.46■■□□□ 1.35
DDX39A-206ENST00000587730 POGKQ9P215 609 aa23.46■■□□□ 1.35
DDX39A-206ENST00000587730 BRPF3Q9ULD4 1205 aa23.46■■□□□ 1.35
DDX39A-206ENST00000587730 CD163L1Q9NR16 1453 aa23.46■■□□□ 1.35
DDX39A-206ENST00000587730 C22orf23Q9BZE7 217 aa23.45■■□□□ 1.34
DDX39A-206ENST00000587730 PREX1Q8TCU6 1659 aa23.45■■□□□ 1.34
DDX39A-206ENST00000587730 RIPK4P57078 832 aa23.45■■□□□ 1.34
DDX39A-206ENST00000587730 GGNBP2Q9H3C7 697 aa23.45■■□□□ 1.34
DDX39A-206ENST00000587730 ZBTB40Q9NUA8 1239 aa23.44■■□□□ 1.34
DDX39A-206ENST00000587730 EIF5BO60841 1220 aaKnown RBP23.43■■□□□ 1.34
DDX39A-206ENST00000587730 DLC1Q96QB1 1528 aa23.43■■□□□ 1.34
DDX39A-206ENST00000587730 ATP7BP35670 1465 aa23.43■■□□□ 1.34
DDX39A-206ENST00000587730 SLKQ9H2G2 1235 aaPredicted RBP23.43■■□□□ 1.34
DDX39A-206ENST00000587730 PRAM1Q96QH2 718 aa23.42■■□□□ 1.34
DDX39A-206ENST00000587730 CHMP5Q9NZZ3 219 aa23.42■■□□□ 1.34
DDX39A-206ENST00000587730 NOB1Q9ULX3 412 aaKnown RBP23.42■■□□□ 1.34
DDX39A-206ENST00000587730 FAM43AQ8N2R8 423 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 ARHGAP45Q92619 1136 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 STK26Q9P289 416 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 KIF20BQ96Q89 1820 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 MLECQ14165 292 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 NUTM2DQ5VT03 806 aaPredicted RBP23.4■■□□□ 1.34
DDX39A-206ENST00000587730 PPP6R1Q9UPN7 881 aa23.4■■□□□ 1.34
DDX39A-206ENST00000587730 NUCB1Q02818 461 aa23.39■■□□□ 1.33
DDX39A-206ENST00000587730 FAM135BQ49AJ0 1406 aa23.38■■□□□ 1.33
DDX39A-206ENST00000587730 SAFB2Q14151 953 aaKnown RBP eCLIP23.38■■□□□ 1.33
DDX39A-206ENST00000587730 ALKQ9UM73 1620 aa23.38■■□□□ 1.33
DDX39A-206ENST00000587730 TMEM57Q8N5G2 664 aa23.38■■□□□ 1.33
DDX39A-206ENST00000587730 AGLP35573 1532 aa23.38■■□□□ 1.33
DDX39A-206ENST00000587730 MINK1Q8N4C8 1332 aaPredicted RBP23.37■■□□□ 1.33
DDX39A-206ENST00000587730 HSCBQ8IWL3 235 aa23.37■■□□□ 1.33
DDX39A-206ENST00000587730 GCC1Q96CN9 775 aa23.36■■□□□ 1.33
DDX39A-206ENST00000587730 CDK19Q9BWU1 502 aa23.36■■□□□ 1.33
DDX39A-206ENST00000587730 PIK3R4Q99570 1358 aa23.35■■□□□ 1.33
DDX39A-206ENST00000587730 RBM25P49756 843 aaKnown RBP23.35■■□□□ 1.33
DDX39A-206ENST00000587730 SNX21Q969T3 373 aa23.35■■□□□ 1.33
DDX39A-206ENST00000587730 RTN4Q9NQC3 1192 aaKnown RBP23.35■■□□□ 1.33
DDX39A-206ENST00000587730 LRRC7Q96NW7 1537 aa23.35■■□□□ 1.33
DDX39A-206ENST00000587730 MFAP1P55081 439 aaKnown RBP23.34■■□□□ 1.33
DDX39A-206ENST00000587730 CFAP44Q96MT7 982 aa23.34■■□□□ 1.33
DDX39A-206ENST00000587730 MCM4P33991 863 aa23.33■■□□□ 1.33
DDX39A-206ENST00000587730 LMOD3Q0VAK6 560 aa23.33■■□□□ 1.33
DDX39A-206ENST00000587730 RSPH6AQ9H0K4 717 aa23.33■■□□□ 1.33
DDX39A-206ENST00000587730 NFE2L2Q16236 605 aa23.33■■□□□ 1.32
DDX39A-206ENST00000587730 BMP2KLQ5H9B9 411 aa23.33■■□□□ 1.32
DDX39A-206ENST00000587730 ISY1Q9ULR0 285 aaKnown RBP23.33■■□□□ 1.32
DDX39A-206ENST00000587730 PTCH1Q13635 1447 aa23.32■■□□□ 1.32
DDX39A-206ENST00000587730 GNAI1P63096 354 aa23.32■■□□□ 1.32
DDX39A-206ENST00000587730 DDX11L8A8MPP1 907 aa23.31■■□□□ 1.32
DDX39A-206ENST00000587730 PTMSP20962 102 aa23.31■■□□□ 1.32
DDX39A-206ENST00000587730 CHD1LQ86WJ1 897 aa23.31■■□□□ 1.32
DDX39A-206ENST00000587730 IFT57Q9NWB7 429 aa23.31■■□□□ 1.32
DDX39A-206ENST00000587730 CIZ1Q9ULV3 898 aaPredicted RBP23.31■■□□□ 1.32
DDX39A-206ENST00000587730 MYO5BQ9ULV0 1848 aa23.31■■□□□ 1.32
DDX39A-206ENST00000587730 NCOA3Q9Y6Q9 1424 aa23.3■■□□□ 1.32
DDX39A-206ENST00000587730 CABP1Q9NZU7 370 aa23.3■■□□□ 1.32
DDX39A-206ENST00000587730 KIF24Q5T7B8 1368 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms