RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 NGDNQ8NEJ9 315 aaKnown RBP28.24■■■□□ 2.11
TRAF4-216ENST00000586813 SRCAPQ6ZRS2 3230 aa28.24■■■□□ 2.11
TRAF4-216ENST00000586813 PHRF1Q9P1Y6 1649 aaKnown RBP28.22■■■□□ 2.11
TRAF4-216ENST00000586813 ONECUT3O60422 494 aaPredicted RBP28.22■■■□□ 2.11
TRAF4-216ENST00000586813 ZRANB1Q9UGI0 708 aa28.22■■■□□ 2.11
TRAF4-216ENST00000586813 BTG4Q9NY30 223 aa28.2■■■□□ 2.1
TRAF4-216ENST00000586813 NUDT16Q96DE0 195 aaKnown RBP28.19■■■□□ 2.1
TRAF4-216ENST00000586813 PAK3O75914 559 aaPredicted RBP28.18■■■□□ 2.1
TRAF4-216ENST00000586813 KRT27Q7Z3Y8 459 aa28.17■■■□□ 2.1
TRAF4-216ENST00000586813 CDK19Q9BWU1 502 aa28.14■■■□□ 2.1
TRAF4-216ENST00000586813 THSD7AQ9UPZ6 1657 aa28.13■■■□□ 2.09
TRAF4-216ENST00000586813 A0A0G2JS52 829 aa28.13■■■□□ 2.09
TRAF4-216ENST00000586813 MYT1Q01538 1121 aa28.13■■■□□ 2.09
TRAF4-216ENST00000586813 FAM98CQ17RN3 349 aaKnown RBP28.13■■■□□ 2.09
TRAF4-216ENST00000586813 POLR3AO14802 1390 aaPredicted RBP28.12■■■□□ 2.09
TRAF4-216ENST00000586813 SF3B2Q13435 895 aaKnown RBP28.12■■■□□ 2.09
TRAF4-216ENST00000586813 DEFB132Q7Z7B7 95 aa28.12■■■□□ 2.09
TRAF4-216ENST00000586813 PRDM11Q9NQV5 511 aa28.11■■■□□ 2.09
TRAF4-216ENST00000586813 QRICH2Q9H0J4 1663 aa28.1■■■□□ 2.09
TRAF4-216ENST00000586813 RGPD1P0DJD0 1748 aa28.09■■■□□ 2.09
TRAF4-216ENST00000586813 SPATA31A5Q5VU36 1347 aa28.09■■■□□ 2.09
TRAF4-216ENST00000586813 SPATA31A7Q8IWB4 1347 aa28.09■■■□□ 2.09
TRAF4-216ENST00000586813 KIAA0232Q92628 1395 aa28.09■■■□□ 2.09
TRAF4-216ENST00000586813 NRKQ7Z2Y5 1582 aa28.08■■■□□ 2.09
TRAF4-216ENST00000586813 NBPF1Q3BBV0 1214 aa28.08■■■□□ 2.09
TRAF4-216ENST00000586813 CCDC61Q9Y6R9 512 aa28.08■■■□□ 2.09
TRAF4-216ENST00000586813 ACEP12821 1306 aa28.08■■■□□ 2.09
TRAF4-216ENST00000586813 PLEKHG3A1L390 1219 aa28.04■■■□□ 2.08
TRAF4-216ENST00000586813 NBPF8Q3BBV2 869 aa28.04■■■□□ 2.08
TRAF4-216ENST00000586813 TNS1Q9HBL0 1735 aaKnown RBP28.03■■■□□ 2.08
TRAF4-216ENST00000586813 CHRNA2Q15822 529 aa28.02■■■□□ 2.08
TRAF4-216ENST00000586813 NUTM2GQ5VZR2 741 aa28.02■■■□□ 2.08
TRAF4-216ENST00000586813 CENPJQ9HC77 1338 aaPredicted RBP28.01■■■□□ 2.07
TRAF4-216ENST00000586813 PPIP5K1Q6PFW1 1433 aa28.01■■■□□ 2.07
TRAF4-216ENST00000586813 LMO7Q8WWI1 1683 aa28■■■□□ 2.07
TRAF4-216ENST00000586813 TRPM1Q7Z4N2 1603 aa28■■■□□ 2.07
TRAF4-216ENST00000586813 SPATA31A1Q5TZJ5 1347 aa27.99■■■□□ 2.07
TRAF4-216ENST00000586813 ZC3H6P61129 1189 aaKnown RBP27.99■■■□□ 2.07
TRAF4-216ENST00000586813 BAG6P46379 1132 aa27.98■■■□□ 2.07
TRAF4-216ENST00000586813 SRPK2P78362 688 aaKnown RBP27.98■■■□□ 2.07
TRAF4-216ENST00000586813 STRN4Q9NRL3 753 aa27.97■■■□□ 2.07
TRAF4-216ENST00000586813 LRP5O75197 1615 aa27.96■■■□□ 2.07
TRAF4-216ENST00000586813 FAM182BQ5T319 152 aa27.96■■■□□ 2.07
TRAF4-216ENST00000586813 ABTB2Q8N961 1025 aa27.96■■■□□ 2.07
TRAF4-216ENST00000586813 USP19O94966 1318 aa27.95■■■□□ 2.07
TRAF4-216ENST00000586813 SSH2Q76I76 1423 aa27.95■■■□□ 2.07
TRAF4-216ENST00000586813 CAMTA1Q9Y6Y1 1673 aa27.95■■■□□ 2.07
TRAF4-216ENST00000586813 CPDO75976 1380 aa27.95■■■□□ 2.06
TRAF4-216ENST00000586813 CABP2Q9NPB3 220 aa27.94■■■□□ 2.06
TRAF4-216ENST00000586813 L3MBTL2Q969R5 705 aa27.92■■■□□ 2.06
TRAF4-216ENST00000586813 DISP2A7MBM2 1401 aa27.92■■■□□ 2.06
TRAF4-216ENST00000586813 BRD4O60885 1362 aaPredicted RBP27.91■■■□□ 2.06
TRAF4-216ENST00000586813 EVA1CP58658 441 aa27.89■■■□□ 2.06
TRAF4-216ENST00000586813 USP6P35125 1406 aa27.89■■■□□ 2.06
TRAF4-216ENST00000586813 PIK3C2AO00443 1686 aa27.88■■■□□ 2.05
TRAF4-216ENST00000586813 EN1Q05925 392 aaPredicted RBP27.88■■■□□ 2.05
TRAF4-216ENST00000586813 NLRP13Q86W25 1043 aa27.88■■■□□ 2.05
TRAF4-216ENST00000586813 USP35Q9P2H5 1018 aa27.88■■■□□ 2.05
TRAF4-216ENST00000586813 SLIT3O75094 1523 aa27.87■■■□□ 2.05
TRAF4-216ENST00000586813 GCP02774 474 aa27.86■■■□□ 2.05
TRAF4-216ENST00000586813 BARGINQ6ZT62 677 aa27.86■■■□□ 2.05
TRAF4-216ENST00000586813 COL5A2P05997 1499 aaPredicted RBP27.86■■■□□ 2.05
TRAF4-216ENST00000586813 PARP4Q9UKK3 1724 aaKnown RBP27.85■■■□□ 2.05
TRAF4-216ENST00000586813 LARP1Q6PKG0 1096 aaKnown RBP27.85■■■□□ 2.05
TRAF4-216ENST00000586813 AKAP12Q02952 1782 aa27.85■■■□□ 2.05
TRAF4-216ENST00000586813 PSDA5PKW4 1024 aaPredicted RBP27.84■■■□□ 2.05
TRAF4-216ENST00000586813 FAM196AQ6ZSG2 479 aa27.84■■■□□ 2.05
TRAF4-216ENST00000586813 SIN3AQ96ST3 1273 aa27.84■■■□□ 2.05
TRAF4-216ENST00000586813 CABP1Q9NZU7 370 aa27.84■■■□□ 2.05
TRAF4-216ENST00000586813 EVC2Q86UK5 1308 aa27.82■■■□□ 2.04
TRAF4-216ENST00000586813 ROCK2O75116 1388 aaKnown RBP27.82■■■□□ 2.04
TRAF4-216ENST00000586813 TCP11L2Q8N4U5 519 aa27.81■■■□□ 2.04
TRAF4-216ENST00000586813 TRIM37O94972 964 aa27.8■■■□□ 2.04
TRAF4-216ENST00000586813 RREB1Q92766 1687 aa27.8■■■□□ 2.04
TRAF4-216ENST00000586813 COL18A1P39060 1754 aa27.8■■■□□ 2.04
TRAF4-216ENST00000586813 WNK3Q9BYP7 1800 aa27.78■■■□□ 2.04
TRAF4-216ENST00000586813 NLRP6P59044 892 aa27.78■■■□□ 2.04
TRAF4-216ENST00000586813 PDE3BQ13370 1112 aa27.78■■■□□ 2.04
TRAF4-216ENST00000586813 THRAP3Q9Y2W1 955 aaKnown RBP27.78■■■□□ 2.04
TRAF4-216ENST00000586813 CRB1P82279 1406 aa27.77■■■□□ 2.04
TRAF4-216ENST00000586813 NEUROD1Q13562 356 aa27.77■■■□□ 2.04
TRAF4-216ENST00000586813 EZH2Q15910 746 aaKnown RBP27.77■■■□□ 2.04
TRAF4-216ENST00000586813 LRRC37A3O60309 1634 aa27.76■■■□□ 2.03
TRAF4-216ENST00000586813 NUP188Q5SRE5 1749 aa27.75■■■□□ 2.03
TRAF4-216ENST00000586813 AATKQ6ZMQ8 1374 aa27.75■■■□□ 2.03
TRAF4-216ENST00000586813 PARD3Q8TEW0 1356 aa27.75■■■□□ 2.03
TRAF4-216ENST00000586813 CAMKK2Q96RR4 588 aa27.74■■■□□ 2.03
TRAF4-216ENST00000586813 MON2Q7Z3U7 1717 aa27.74■■■□□ 2.03
TRAF4-216ENST00000586813 RGPD5Q99666 1765 aa27.73■■■□□ 2.03
TRAF4-216ENST00000586813 PEAK1Q9H792 1746 aa27.73■■■□□ 2.03
TRAF4-216ENST00000586813 ZBTB7CA1YPR0 619 aa27.73■■■□□ 2.03
TRAF4-216ENST00000586813 R3HDM1Q15032 1099 aaKnown RBP27.73■■■□□ 2.03
TRAF4-216ENST00000586813 APBA3O96018 575 aa27.72■■■□□ 2.03
TRAF4-216ENST00000586813 CPSF1Q10570 1443 aaKnown RBP27.7■■■□□ 2.03
TRAF4-216ENST00000586813 SBF2Q86WG5 1849 aa27.7■■■□□ 2.02
TRAF4-216ENST00000586813 TTC21BQ7Z4L5 1316 aa27.68■■■□□ 2.02
TRAF4-216ENST00000586813 ZNF692Q9BU19 519 aaPredicted RBP27.68■■■□□ 2.02
TRAF4-216ENST00000586813 RGPD3A6NKT7 1758 aaPredicted RBP27.67■■■□□ 2.02
TRAF4-216ENST00000586813 RGPD4Q7Z3J3 1758 aa27.67■■■□□ 2.02
TRAF4-216ENST00000586813 TTC21AQ8NDW8 1320 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms