RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, humanhuman

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-204ENST00000586792 MAN1A2O60476 641 aa10.09□□□□□ -0.79
ZNF540-204ENST00000586792 FAM174AQ8TBP5 190 aa10.09□□□□□ -0.79
ZNF540-204ENST00000586792 PCDHGC3Q9UN70 934 aa10.09□□□□□ -0.79
ZNF540-204ENST00000586792 DESI1Q6ICB0 168 aa10.08□□□□□ -0.8
ZNF540-204ENST00000586792 SPDYE5A6NIY4 337 aa10.07□□□□□ -0.8
ZNF540-204ENST00000586792 SOBPA7XYQ1 873 aa10.07□□□□□ -0.8
ZNF540-204ENST00000586792 CCDC102AQ96A19 550 aa10.07□□□□□ -0.8
ZNF540-204ENST00000586792 KCTD17Q8N5Z5 321 aa10.06□□□□□ -0.8
ZNF540-204ENST00000586792 KLF16Q9BXK1 252 aaPredicted RBP10.06□□□□□ -0.8
ZNF540-204ENST00000586792 UPP2O95045 317 aa10.05□□□□□ -0.8
ZNF540-204ENST00000586792 TMEM151AQ8N4L1 468 aa10.05□□□□□ -0.8
ZNF540-204ENST00000586792 PRR7Q8TB68 274 aa10.05□□□□□ -0.8
ZNF540-204ENST00000586792 RNF225M0QZC1 329 aaPredicted RBP10.04□□□□□ -0.8
ZNF540-204ENST00000586792 PPFIA3O75145 1194 aa10.04□□□□□ -0.8
ZNF540-204ENST00000586792 CDK15Q96Q40 435 aa10.04□□□□□ -0.8
ZNF540-204ENST00000586792 ZIC2O95409 532 aaPredicted RBP10.03□□□□□ -0.8
ZNF540-204ENST00000586792 NR5A1Q13285 461 aa10.03□□□□□ -0.8
ZNF540-204ENST00000586792 MTMR2Q13614 643 aa10.03□□□□□ -0.8
ZNF540-204ENST00000586792 GDF11O95390 407 aa10.01□□□□□ -0.81
ZNF540-204ENST00000586792 CTHP32929 405 aa10.01□□□□□ -0.81
ZNF540-204ENST00000586792 C6orf118Q5T5N4 469 aa10.01□□□□□ -0.81
ZNF540-204ENST00000586792 SPIRE2Q8WWL2 714 aa10.01□□□□□ -0.81
ZNF540-204ENST00000586792 SSTR3P32745 418 aaPredicted RBP10□□□□□ -0.81
ZNF540-204ENST00000586792 GSK3AP49840 483 aa10□□□□□ -0.81
ZNF540-204ENST00000586792 ARID5BQ14865 1188 aa10□□□□□ -0.81
ZNF540-204ENST00000586792 SPTLC1O15269 473 aa9.99□□□□□ -0.81
ZNF540-204ENST00000586792 BMP2P12643 396 aa9.99□□□□□ -0.81
ZNF540-204ENST00000586792 NDUFV2P19404 249 aa9.99□□□□□ -0.81
ZNF540-204ENST00000586792 RASSF7Q02833 373 aa9.99□□□□□ -0.81
ZNF540-204ENST00000586792 ITPKCQ96DU7 683 aa9.99□□□□□ -0.81
ZNF540-204ENST00000586792 MOXD2PA6NHM9 499 aa9.98□□□□□ -0.81
ZNF540-204ENST00000586792 ZFAND3Q9H8U3 227 aa9.98□□□□□ -0.81
ZNF540-204ENST00000586792 LYPD8Q6UX82 237 aa9.97□□□□□ -0.81
ZNF540-204ENST00000586792 LINC00528Q8N1L1 170 aa9.96□□□□□ -0.82
ZNF540-204ENST00000586792 GJA5P36382 358 aa9.95□□□□□ -0.82
ZNF540-204ENST00000586792 PLCB2Q00722 1185 aa9.95□□□□□ -0.82
ZNF540-204ENST00000586792 AGERQ15109 404 aa9.95□□□□□ -0.82
ZNF540-204ENST00000586792 FOXJ1Q92949 421 aa9.95□□□□□ -0.82
ZNF540-204ENST00000586792 ADAMTS8Q9UP79 889 aa9.95□□□□□ -0.82
ZNF540-204ENST00000586792 SOS2Q07890 1332 aaPredicted RBP9.94□□□□□ -0.82
ZNF540-204ENST00000586792 BPHLQ86WA6 291 aaPredicted RBP9.94□□□□□ -0.82
ZNF540-204ENST00000586792 MEIOBQ8N635 442 aa9.94□□□□□ -0.82
ZNF540-204ENST00000586792 NR3C2P08235 984 aa9.93□□□□□ -0.82
ZNF540-204ENST00000586792 DIXDC1Q155Q3 683 aa9.93□□□□□ -0.82
ZNF540-204ENST00000586792 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.93□□□□□ -0.82
ZNF540-204ENST00000586792 GRM5P41594 1212 aa9.92□□□□□ -0.82
ZNF540-204ENST00000586792 CNTNAP3BQ96NU0 1288 aa9.92□□□□□ -0.82
ZNF540-204ENST00000586792 TSEN34Q9BSV6 310 aaKnown RBP9.92□□□□□ -0.82
ZNF540-204ENST00000586792 CNTNAP3Q9BZ76 1288 aa9.92□□□□□ -0.82
ZNF540-204ENST00000586792 DNMT3LQ9UJW3 386 aa9.91□□□□□ -0.82
ZNF540-204ENST00000586792 F12P00748 615 aaPredicted RBP9.89□□□□□ -0.83
ZNF540-204ENST00000586792 IGHA1P01876 353 aa9.89□□□□□ -0.83
ZNF540-204ENST00000586792 KRT76Q01546 638 aa9.89□□□□□ -0.83
ZNF540-204ENST00000586792 TTLL12Q14166 644 aaPredicted RBP9.89□□□□□ -0.83
ZNF540-204ENST00000586792 GPR161Q8N6U8 529 aaKnown RBP9.88□□□□□ -0.83
ZNF540-204ENST00000586792 ARMC2Q8NEN0 867 aa9.88□□□□□ -0.83
ZNF540-204ENST00000586792 NANOS1Q8WY41 292 aaKnown RBP9.88□□□□□ -0.83
ZNF540-204ENST00000586792 MAP10Q9P2G4 905 aa9.88□□□□□ -0.83
ZNF540-204ENST00000586792 EMILIN1Q9Y6C2 1016 aa9.88□□□□□ -0.83
ZNF540-204ENST00000586792 TTLL8A6PVC2 850 aa9.87□□□□□ -0.83
ZNF540-204ENST00000586792 COL25A1Q9BXS0 654 aaPredicted RBP9.87□□□□□ -0.83
ZNF540-204ENST00000586792 PTSQ03393 145 aa9.86□□□□□ -0.83
ZNF540-204ENST00000586792 C4orf48Q5BLP8 95 aa9.86□□□□□ -0.83
ZNF540-204ENST00000586792 RSBN1LQ6PCB5 846 aaPredicted RBP9.86□□□□□ -0.83
ZNF540-204ENST00000586792 SVOPQ8N4V2 548 aa9.86□□□□□ -0.83
ZNF540-204ENST00000586792 ZBTB3Q9H5J0 574 aa9.86□□□□□ -0.83
ZNF540-204ENST00000586792 MAP4K5Q9Y4K4 846 aa9.86□□□□□ -0.83
ZNF540-204ENST00000586792 DNMT3AQ9Y6K1 912 aaPredicted RBP9.86□□□□□ -0.83
ZNF540-204ENST00000586792 FOXK2Q01167 660 aa9.85□□□□□ -0.83
ZNF540-204ENST00000586792 BEGAINQ9BUH8 593 aa9.85□□□□□ -0.83
ZNF540-204ENST00000586792 CFAP99D6REC4 459 aa9.84□□□□□ -0.83
ZNF540-204ENST00000586792 FSHRP23945 695 aa9.84□□□□□ -0.83
ZNF540-204ENST00000586792 PRPF38BQ5VTL8 546 aaKnown RBP9.84□□□□□ -0.83
ZNF540-204ENST00000586792 ZNF385CQ66K41 422 aaPredicted RBP9.84□□□□□ -0.83
ZNF540-204ENST00000586792 KANK3Q6NY19 840 aa9.84□□□□□ -0.83
ZNF540-204ENST00000586792 VASH1Q7L8A9 365 aaPredicted RBP9.84□□□□□ -0.83
ZNF540-204ENST00000586792 CCDC180Q9P1Z9 1646 aa9.84□□□□□ -0.83
ZNF540-204ENST00000586792 HRCP23327 699 aa9.83□□□□□ -0.84
ZNF540-204ENST00000586792 CCDC116Q8IYX3 515 aa9.83□□□□□ -0.84
ZNF540-204ENST00000586792 TBC1D2Q9BYX2 928 aa9.83□□□□□ -0.84
ZNF540-204ENST00000586792 MARSP56192 900 aaKnown RBP9.82□□□□□ -0.84
ZNF540-204ENST00000586792 AMHR2Q16671 573 aa9.82□□□□□ -0.84
ZNF540-204ENST00000586792 NBPF14Q5TI25 921 aa9.82□□□□□ -0.84
ZNF540-204ENST00000586792 GPAT2Q6NUI2 795 aa9.82□□□□□ -0.84
ZNF540-204ENST00000586792 GIGYF2Q6Y7W6 1299 aaKnown RBP9.82□□□□□ -0.84
ZNF540-204ENST00000586792 C1QTNF2Q9BXJ5 285 aa9.82□□□□□ -0.84
ZNF540-204ENST00000586792 SLURP2P0DP57 97 aa9.81□□□□□ -0.84
ZNF540-204ENST00000586792 IRS1P35568 1242 aa9.81□□□□□ -0.84
ZNF540-204ENST00000586792 TRMT44Q8IYL2 757 aaKnown RBP9.81□□□□□ -0.84
ZNF540-204ENST00000586792 CCDC155Q8N6L0 562 aa9.81□□□□□ -0.84
ZNF540-204ENST00000586792 SCARF2Q96GP6 870 aaPredicted RBP9.81□□□□□ -0.84
ZNF540-204ENST00000586792 PCDHB15Q9Y5E8 787 aa9.81□□□□□ -0.84
ZNF540-204ENST00000586792 SH3RF1Q7Z6J0 888 aa9.8□□□□□ -0.84
ZNF540-204ENST00000586792 FIGNL2A6NMB9 653 aa9.79□□□□□ -0.84
ZNF540-204ENST00000586792 HAP1P54257 671 aaPredicted RBP9.79□□□□□ -0.84
ZNF540-204ENST00000586792 PGPEP1Q9NXJ5 209 aa9.79□□□□□ -0.84
ZNF540-204ENST00000586792 ARHGEF15O94989 841 aa9.78□□□□□ -0.84
ZNF540-204ENST00000586792 SV2AQ7L0J3 742 aa9.78□□□□□ -0.84
ZNF540-204ENST00000586792 SLC35F4A4IF30 521 aa9.77□□□□□ -0.85
ZNF540-204ENST00000586792 SPINT1O43278 529 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms