RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 ASXL1Q8IXJ9 1541 aa11.55□□□□□ -0.56
SMAD4-204ENST00000586253 KIAA1210Q9ULL0 1709 aa11.55□□□□□ -0.56
SMAD4-204ENST00000586253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.55□□□□□ -0.56
SMAD4-204ENST00000586253 KDM2AQ9Y2K7 1162 aa11.55□□□□□ -0.56
SMAD4-204ENST00000586253 XIRP1Q702N8 1843 aaKnown RBP11.55□□□□□ -0.56
SMAD4-204ENST00000586253 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
SMAD4-204ENST00000586253 TECPR2O15040 1411 aa11.54□□□□□ -0.56
SMAD4-204ENST00000586253 DPY19L2Q6NUT2 758 aa11.54□□□□□ -0.56
SMAD4-204ENST00000586253 PROSER2Q86WR7 435 aaPredicted RBP11.54□□□□□ -0.56
SMAD4-204ENST00000586253 KNDC1Q76NI1 1749 aa11.54□□□□□ -0.56
SMAD4-204ENST00000586253 LRPPRCP42704 1394 aaKnown RBP11.54□□□□□ -0.56
SMAD4-204ENST00000586253 TMEM94Q12767 1356 aa11.54□□□□□ -0.56
SMAD4-204ENST00000586253 CFAP70Q5T0N1 1121 aa11.53□□□□□ -0.56
SMAD4-204ENST00000586253 L3MBTL3Q96JM7 780 aaPredicted RBP11.53□□□□□ -0.56
SMAD4-204ENST00000586253 TMEM121BQ9BXQ6 578 aaPredicted RBP11.53□□□□□ -0.56
SMAD4-204ENST00000586253 ADGRB1O14514 1584 aa11.53□□□□□ -0.56
SMAD4-204ENST00000586253 ABCC11Q96J66 1382 aa11.53□□□□□ -0.56
SMAD4-204ENST00000586253 YTHDC2Q9H6S0 1430 aaKnown RBP11.52□□□□□ -0.56
SMAD4-204ENST00000586253 CCER1Q8TC90 406 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-204ENST00000586253 CIZ1Q9ULV3 898 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-204ENST00000586253 TIMELESSQ9UNS1 1208 aa11.51□□□□□ -0.57
SMAD4-204ENST00000586253 DLC1Q96QB1 1528 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 GOLGA2Q08379 1002 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 TMEM132EQ6IEE7 984 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 FBXO41Q8TF61 875 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 SIRT1Q96EB6 747 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 MSH6P52701 1360 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 ROBO2Q9HCK4 1378 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 FAM135BQ49AJ0 1406 aa11.5□□□□□ -0.57
SMAD4-204ENST00000586253 SNPHO15079 494 aa11.49□□□□□ -0.57
SMAD4-204ENST00000586253 DCCP43146 1447 aa11.49□□□□□ -0.57
SMAD4-204ENST00000586253 TRPM1Q7Z4N2 1603 aa11.49□□□□□ -0.57
SMAD4-204ENST00000586253 TOM1O60784 492 aa11.48□□□□□ -0.57
SMAD4-204ENST00000586253 C19orf44Q9H6X5 657 aa11.48□□□□□ -0.57
SMAD4-204ENST00000586253 CABP2Q9NPB3 220 aa11.48□□□□□ -0.57
SMAD4-204ENST00000586253 ADGRL3Q9HAR2 1447 aa11.48□□□□□ -0.57
SMAD4-204ENST00000586253 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.47□□□□□ -0.57
SMAD4-204ENST00000586253 NALCNQ8IZF0 1738 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 UBAP1LF5GYI3 381 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 C3orf67Q6ZVT6 689 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 C14orf37Q86TY3 774 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 MARVELD3Q96A59 401 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 RBM33Q96EV2 1170 aaKnown RBP11.46□□□□□ -0.57
SMAD4-204ENST00000586253 STK26Q9P289 416 aa11.46□□□□□ -0.57
SMAD4-204ENST00000586253 CADPS2Q86UW7 1296 aa11.45□□□□□ -0.58
SMAD4-204ENST00000586253 ARHGEF28Q8N1W1 1705 aaKnown RBP11.45□□□□□ -0.58
SMAD4-204ENST00000586253 RALGAPBQ86X10 1494 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 ROCK2O75116 1388 aaKnown RBP11.44□□□□□ -0.58
SMAD4-204ENST00000586253 GPRASP1Q5JY77 1395 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 POTEB3A0JP26 581 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 ATF3P18847 181 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 NBPF1Q3BBV0 1214 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 NBPF8Q3BBV2 869 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 POTEBQ6S5H4 581 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 CDC42BPGQ6DT37 1551 aa11.44□□□□□ -0.58
SMAD4-204ENST00000586253 PLEKHH1Q9ULM0 1364 aa11.43□□□□□ -0.58
SMAD4-204ENST00000586253 WAPLQ7Z5K2 1190 aa11.43□□□□□ -0.58
SMAD4-204ENST00000586253 TRAK1Q9UPV9 953 aa11.43□□□□□ -0.58
SMAD4-204ENST00000586253 PRAM1Q96QH2 718 aa11.42□□□□□ -0.58
SMAD4-204ENST00000586253 POGKQ9P215 609 aa11.42□□□□□ -0.58
SMAD4-204ENST00000586253 ADGRB2O60241 1585 aa11.41□□□□□ -0.58
SMAD4-204ENST00000586253 RNF25Q96BH1 459 aaPredicted RBP11.41□□□□□ -0.58
SMAD4-204ENST00000586253 SLAIN2Q9P270 581 aa11.41□□□□□ -0.58
SMAD4-204ENST00000586253 HOXB3P14651 431 aaPredicted RBP11.4□□□□□ -0.58
SMAD4-204ENST00000586253 BOLA1Q9Y3E2 137 aa11.4□□□□□ -0.58
SMAD4-204ENST00000586253 MST1RQ04912 1400 aa11.4□□□□□ -0.58
SMAD4-204ENST00000586253 EIF3AQ14152 1382 aaKnown RBP11.4□□□□□ -0.59
SMAD4-204ENST00000586253 PIP4K2BP78356 416 aa11.39□□□□□ -0.59
SMAD4-204ENST00000586253 ROBO1Q9Y6N7 1651 aa11.39□□□□□ -0.59
SMAD4-204ENST00000586253 FMN2Q9NZ56 1722 aa11.38□□□□□ -0.59
SMAD4-204ENST00000586253 SPNS2Q8IVW8 549 aa11.38□□□□□ -0.59
SMAD4-204ENST00000586253 EFCAB3Q8N7B9 438 aa11.38□□□□□ -0.59
SMAD4-204ENST00000586253 CARD11Q9BXL7 1154 aa11.38□□□□□ -0.59
SMAD4-204ENST00000586253 CENPJQ9HC77 1338 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-204ENST00000586253 SAFB2Q14151 953 aaKnown RBP eCLIP11.37□□□□□ -0.59
SMAD4-204ENST00000586253 C1orf167Q5SNV9 1468 aa11.37□□□□□ -0.59
SMAD4-204ENST00000586253 QRICH2Q9H0J4 1663 aa11.36□□□□□ -0.59
SMAD4-204ENST00000586253 PLCB2Q00722 1185 aa11.36□□□□□ -0.59
SMAD4-204ENST00000586253 ANKARQ7Z5J8 1434 aa11.35□□□□□ -0.59
SMAD4-204ENST00000586253 SBNO2Q9Y2G9 1366 aa11.35□□□□□ -0.59
SMAD4-204ENST00000586253 AHDC1Q5TGY3 1603 aaPredicted RBP11.35□□□□□ -0.59
SMAD4-204ENST00000586253 MINK1Q8N4C8 1332 aaPredicted RBP11.35□□□□□ -0.59
SMAD4-204ENST00000586253 WASLO00401 505 aaPredicted RBP11.34□□□□□ -0.59
SMAD4-204ENST00000586253 MMRN1Q13201 1228 aa11.34□□□□□ -0.59
SMAD4-204ENST00000586253 BRINP3Q76B58 766 aa11.34□□□□□ -0.59
SMAD4-204ENST00000586253 TULP4Q9NRJ4 1543 aa11.34□□□□□ -0.59
SMAD4-204ENST00000586253 HIRIP3Q9BW71 556 aaPredicted RBP11.33□□□□□ -0.6
SMAD4-204ENST00000586253 KRTAP3-3Q9BYR6 98 aa11.33□□□□□ -0.6
SMAD4-204ENST00000586253 KRTAP3-2Q9BYR7 98 aa11.33□□□□□ -0.6
SMAD4-204ENST00000586253 NHSL1Q5SYE7 1610 aa11.33□□□□□ -0.6
SMAD4-204ENST00000586253 KIF1AQ12756 1690 aa11.33□□□□□ -0.6
SMAD4-204ENST00000586253 USP32Q8NFA0 1604 aa11.32□□□□□ -0.6
SMAD4-204ENST00000586253 EMP3P54852 163 aa11.32□□□□□ -0.6
SMAD4-204ENST00000586253 ITSN1Q15811 1721 aa11.32□□□□□ -0.6
SMAD4-204ENST00000586253 USP47Q96K76 1375 aa11.31□□□□□ -0.6
SMAD4-204ENST00000586253 HSPA1LP34931 641 aa11.31□□□□□ -0.6
SMAD4-204ENST00000586253 TMEM92Q6UXU6 159 aa11.31□□□□□ -0.6
SMAD4-204ENST00000586253 MS4A4AQ96JQ5 239 aa11.31□□□□□ -0.6
SMAD4-204ENST00000586253 HS3ST6Q96QI5 342 aa11.31□□□□□ -0.6
SMAD4-204ENST00000586253 PHLPP1O60346 1717 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms