RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 UPF2Q9HAU5 1272 aaKnown RBP18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 U2SURPO15042 1029 aaKnown RBP18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 FYB1O15117 783 aa18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 PLEKHG5O94827 1062 aa18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 TBC1D32Q96NH3 1257 aa18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 TERF2IPQ9NYB0 399 aa18.09■□□□□ 0.49
CDK5RAP3-237ENST00000585163 CLTCQ00610 1675 aaKnown RBP18.08■□□□□ 0.49
CDK5RAP3-237ENST00000585163 CD163L1Q9NR16 1453 aa18.08■□□□□ 0.49
CDK5RAP3-237ENST00000585163 MYO5BQ9ULV0 1848 aa18.08■□□□□ 0.49
CDK5RAP3-237ENST00000585163 EXOSC9Q06265 439 aaKnown RBP18.08■□□□□ 0.49
CDK5RAP3-237ENST00000585163 IL16Q14005 1332 aa18.08■□□□□ 0.48
CDK5RAP3-237ENST00000585163 TMEM131LA2VDJ0 1609 aa18.08■□□□□ 0.48
CDK5RAP3-237ENST00000585163 SMC4Q9NTJ3 1288 aa18.08■□□□□ 0.48
CDK5RAP3-237ENST00000585163 RICTORQ6R327 1708 aa18.08■□□□□ 0.48
CDK5RAP3-237ENST00000585163 TRIM27P14373 513 aa18.07■□□□□ 0.48
CDK5RAP3-237ENST00000585163 PREX1Q8TCU6 1659 aa18.06■□□□□ 0.48
CDK5RAP3-237ENST00000585163 SSH1Q8WYL5 1049 aa18.06■□□□□ 0.48
CDK5RAP3-237ENST00000585163 YTHDC2Q9H6S0 1430 aaKnown RBP18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 PRAM1Q96QH2 718 aa18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 HDAC1Q13547 482 aaPredicted RBP18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 DDX19BQ9UMR2 479 aa18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 MINK1Q8N4C8 1332 aaPredicted RBP18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 PNPLA6Q8IY17 1366 aa18.05■□□□□ 0.48
CDK5RAP3-237ENST00000585163 ATF7IPQ6VMQ6 1270 aa18.04■□□□□ 0.48
CDK5RAP3-237ENST00000585163 ANTXR1Q9H6X2 564 aa18.03■□□□□ 0.48
CDK5RAP3-237ENST00000585163 YEATS2Q9ULM3 1422 aa18.03■□□□□ 0.48
CDK5RAP3-237ENST00000585163 POGKQ9P215 609 aa18.03■□□□□ 0.48
CDK5RAP3-237ENST00000585163 BRPF3Q9ULD4 1205 aa18.03■□□□□ 0.48
CDK5RAP3-237ENST00000585163 DIAPH1O60610 1272 aaKnown RBP18.02■□□□□ 0.48
CDK5RAP3-237ENST00000585163 RIPK4P57078 832 aa18.02■□□□□ 0.48
CDK5RAP3-237ENST00000585163 PNNQ9H307 717 aaKnown RBP18.02■□□□□ 0.47
CDK5RAP3-237ENST00000585163 ITPRIPQ8IWB1 547 aa18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 SLKQ9H2G2 1235 aaPredicted RBP18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 SENP3Q9H4L4 574 aaPredicted RBP18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 HDGFL2Q7Z4V5 671 aaPredicted RBP18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 TBC1D2Q9BYX2 928 aa18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 NOB1Q9ULX3 412 aaKnown RBP18.01■□□□□ 0.47
CDK5RAP3-237ENST00000585163 ARHGEF40Q8TER5 1519 aa18■□□□□ 0.47
CDK5RAP3-237ENST00000585163 CDC42BPGQ6DT37 1551 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 SMC5Q8IY18 1101 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 RTN4Q9NQC3 1192 aaKnown RBP17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 ALKQ9UM73 1620 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 KIF20BQ96Q89 1820 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 KIF16BQ96L93 1317 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 CDK19Q9BWU1 502 aa17.99■□□□□ 0.47
CDK5RAP3-237ENST00000585163 FCHSD2O94868 740 aa17.98■□□□□ 0.47
CDK5RAP3-237ENST00000585163 ZBTB40Q9NUA8 1239 aa17.98■□□□□ 0.47
CDK5RAP3-237ENST00000585163 TMEM57Q8N5G2 664 aa17.98■□□□□ 0.47
CDK5RAP3-237ENST00000585163 IPO8O15397 1037 aaKnown RBP17.97■□□□□ 0.47
CDK5RAP3-237ENST00000585163 ALDH1L2Q3SY69 923 aa17.97■□□□□ 0.47
CDK5RAP3-237ENST00000585163 CABP1Q9NZU7 370 aa17.97■□□□□ 0.47
CDK5RAP3-237ENST00000585163 LRRC7Q96NW7 1537 aa17.96■□□□□ 0.47
CDK5RAP3-237ENST00000585163 C22orf23Q9BZE7 217 aa17.95■□□□□ 0.46
CDK5RAP3-237ENST00000585163 FBXO31Q5XUX0 539 aaPredicted RBP17.95■□□□□ 0.46
CDK5RAP3-237ENST00000585163 FAM135BQ49AJ0 1406 aa17.94■□□□□ 0.46
CDK5RAP3-237ENST00000585163 PPIP5K1Q6PFW1 1433 aa17.94■□□□□ 0.46
CDK5RAP3-237ENST00000585163 BRPF1P55201 1214 aaPredicted RBP17.94■□□□□ 0.46
CDK5RAP3-237ENST00000585163 ZNF428Q96B54 188 aa17.94■□□□□ 0.46
CDK5RAP3-237ENST00000585163 RSPH6AQ9H0K4 717 aa17.94■□□□□ 0.46
CDK5RAP3-237ENST00000585163 POLKQ9UBT6 870 aa17.93■□□□□ 0.46
CDK5RAP3-237ENST00000585163 ATP7BP35670 1465 aa17.92■□□□□ 0.46
CDK5RAP3-237ENST00000585163 MFAP1P55081 439 aaKnown RBP17.92■□□□□ 0.46
CDK5RAP3-237ENST00000585163 DLC1Q96QB1 1528 aa17.92■□□□□ 0.46
CDK5RAP3-237ENST00000585163 PRKAR2BP31323 418 aa17.92■□□□□ 0.46
CDK5RAP3-237ENST00000585163 NUCB1Q02818 461 aa17.91■□□□□ 0.46
CDK5RAP3-237ENST00000585163 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.9■□□□□ 0.46
CDK5RAP3-237ENST00000585163 STAG3Q9UJ98 1225 aa17.89■□□□□ 0.45
CDK5RAP3-237ENST00000585163 PODXL2Q9NZ53 605 aa17.89■□□□□ 0.45
CDK5RAP3-237ENST00000585163 FBLN1P23142 703 aa17.88■□□□□ 0.45
CDK5RAP3-237ENST00000585163 NFE2L2Q16236 605 aa17.88■□□□□ 0.45
CDK5RAP3-237ENST00000585163 MAP2P11137 1827 aaKnown RBP17.88■□□□□ 0.45
CDK5RAP3-237ENST00000585163 PHACTR3Q96KR7 559 aa17.87■□□□□ 0.45
CDK5RAP3-237ENST00000585163 CALD1Q05682 793 aaKnown RBP17.87■□□□□ 0.45
CDK5RAP3-237ENST00000585163 WAPLQ7Z5K2 1190 aa17.87■□□□□ 0.45
CDK5RAP3-237ENST00000585163 ARHGAP45Q92619 1136 aa17.87■□□□□ 0.45
CDK5RAP3-237ENST00000585163 VAMP4O75379 141 aa17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 CHD1LQ86WJ1 897 aa17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 SETD1AO15047 1707 aaKnown RBP17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 PIK3R4Q99570 1358 aa17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 A2ML1A8K2U0 1454 aa17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 ZBTB7BO15156 539 aaPredicted RBP17.86■□□□□ 0.45
CDK5RAP3-237ENST00000585163 SPRYD3Q8NCJ5 442 aa17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 LNPKQ9C0E8 428 aa17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 CHMP4BQ9H444 224 aaKnown RBP17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 CHMP5Q9NZZ3 219 aa17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 CPSF1Q10570 1443 aaKnown RBP17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 PTCH1Q13635 1447 aa17.85■□□□□ 0.45
CDK5RAP3-237ENST00000585163 HMOX1P09601 288 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 RBM25P49756 843 aaKnown RBP17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 MRPL50Q8N5N7 158 aaKnown RBP17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 RIMBP3CA6NJZ7 1639 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 RIMBP3BA6NNM3 1639 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 RIMBP3Q9UFD9 1639 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 IFT57Q9NWB7 429 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 PPP6R1Q9UPN7 881 aa17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 EDC4Q6P2E9 1401 aaKnown RBP17.84■□□□□ 0.45
CDK5RAP3-237ENST00000585163 MCM4P33991 863 aa17.83■□□□□ 0.45
CDK5RAP3-237ENST00000585163 IL13P35225 146 aa17.83■□□□□ 0.45
CDK5RAP3-237ENST00000585163 GNAI1P63096 354 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms