RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	CABLES1	Q8TDN4	633 aa		7.58	□□□□□ -1.2
VAPA-208	ENST00000584796	SENP2	Q9HC62	589 aa		7.58	□□□□□ -1.2
VAPA-208	ENST00000584796	LIMD1	Q9UGP4	676 aa		7.58	□□□□□ -1.2
VAPA-208	ENST00000584796	SNRPB	P14678	240 aa	Known RBP	7.57	□□□□□ -1.2
VAPA-208	ENST00000584796	VARS	P26640	1264 aa	Known RBP	7.57	□□□□□ -1.2
VAPA-208	ENST00000584796	TLL2	Q9Y6L7	1015 aa		7.57	□□□□□ -1.2
VAPA-208	ENST00000584796	WASF2	Q9Y6W5	498 aa		7.57	□□□□□ -1.2
VAPA-208	ENST00000584796	CTH	P32929	405 aa		7.56	□□□□□ -1.2
VAPA-208	ENST00000584796	MAP10	Q9P2G4	905 aa		7.56	□□□□□ -1.2
VAPA-208	ENST00000584796	LILRB3	O75022	631 aa		7.55	□□□□□ -1.2
VAPA-208	ENST00000584796	QPCT	Q16769	361 aa		7.55	□□□□□ -1.2
VAPA-208	ENST00000584796	CSPP1	Q1MSJ5	1256 aa		7.55	□□□□□ -1.2
VAPA-208	ENST00000584796	KIFC2	Q96AC6	838 aa		7.55	□□□□□ -1.2
VAPA-208	ENST00000584796	PER1	O15534	1290 aa	Predicted RBP	7.54	□□□□□ -1.2
VAPA-208	ENST00000584796	NFX1	Q12986	1120 aa	Known RBP	7.54	□□□□□ -1.2
VAPA-208	ENST00000584796	PLEKHG3	A1L390	1219 aa		7.53	□□□□□ -1.2
VAPA-208	ENST00000584796	CAPN5	O15484	640 aa	Predicted RBP	7.53	□□□□□ -1.2
VAPA-208	ENST00000584796	WFS1	O76024	890 aa		7.53	□□□□□ -1.2
VAPA-208	ENST00000584796	CLK2	P49760	499 aa	Known RBP	7.52	□□□□□ -1.21
VAPA-208	ENST00000584796	TRIM46	Q7Z4K8	759 aa		7.52	□□□□□ -1.21
VAPA-208	ENST00000584796	NUTM2B	A6NNL0	878 aa	Predicted RBP	7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	NUTM2E	B1AL46	878 aa	Predicted RBP	7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	BMP1	P13497	986 aa		7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	NNT	Q13423	1086 aa		7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	NUTM2D	Q5VT03	806 aa	Predicted RBP	7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	NUTM2A	Q8IVF1	878 aa	Predicted RBP	7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	FAM174A	Q8TBP5	190 aa		7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	FOXJ1	Q92949	421 aa		7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	CDK15	Q96Q40	435 aa		7.51	□□□□□ -1.21
VAPA-208	ENST00000584796	ADH1C	P00326	375 aa		7.5	□□□□□ -1.21
VAPA-208	ENST00000584796	C4orf48	Q5BLP8	95 aa		7.5	□□□□□ -1.21
VAPA-208	ENST00000584796	RTL5	Q5HYW3	569 aa	Predicted RBP	7.5	□□□□□ -1.21
VAPA-208	ENST00000584796	RSPH6A	Q9H0K4	717 aa		7.5	□□□□□ -1.21
VAPA-208	ENST00000584796	TERT	O14746	1132 aa	Known RBP	7.49	□□□□□ -1.21
VAPA-208	ENST00000584796	HELB	Q8NG08	1087 aa	Predicted RBP	7.49	□□□□□ -1.21
VAPA-208	ENST00000584796	TSC1	Q92574	1164 aa		7.49	□□□□□ -1.21
VAPA-208	ENST00000584796	WIPF1	O43516	503 aa		7.48	□□□□□ -1.21
VAPA-208	ENST00000584796	TIMP2	P16035	220 aa		7.48	□□□□□ -1.21
VAPA-208	ENST00000584796	LCE2C	Q5TA81	110 aa		7.48	□□□□□ -1.21
VAPA-208	ENST00000584796	KLF16	Q9BXK1	252 aa	Predicted RBP	7.48	□□□□□ -1.21
VAPA-208	ENST00000584796	SH3RF1	Q7Z6J0	888 aa		7.47	□□□□□ -1.21
VAPA-208	ENST00000584796	BPHL	Q86WA6	291 aa	Predicted RBP	7.47	□□□□□ -1.21
VAPA-208	ENST00000584796	ARMC2	Q8NEN0	867 aa		7.47	□□□□□ -1.21
VAPA-208	ENST00000584796	C1QTNF2	Q9BXJ5	285 aa		7.47	□□□□□ -1.21
VAPA-208	ENST00000584796	POLR3E	Q9NVU0	708 aa		7.47	□□□□□ -1.21
VAPA-208	ENST00000584796	WDR4	P57081	412 aa	Known RBP	7.46	□□□□□ -1.22
VAPA-208	ENST00000584796	GRM5	P41594	1212 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	NR5A1	Q13285	461 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	AGER	Q15109	404 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	NBPF14	Q5TI25	921 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	SH3BP5L	Q7L8J4	393 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	ZFP42	Q96MM3	310 aa		7.45	□□□□□ -1.22
VAPA-208	ENST00000584796	NR3C2	P08235	984 aa		7.44	□□□□□ -1.22
VAPA-208	ENST00000584796	ARID5B	Q14865	1188 aa		7.44	□□□□□ -1.22
VAPA-208	ENST00000584796	SH3D19	Q5HYK7	790 aa		7.44	□□□□□ -1.22
VAPA-208	ENST00000584796	MRPL14	Q6P1L8	145 aa	Known RBP	7.44	□□□□□ -1.22
VAPA-208	ENST00000584796	KDM4C	Q9H3R0	1056 aa		7.44	□□□□□ -1.22
VAPA-208	ENST00000584796	SKIV2L	Q15477	1246 aa	Known RBP	7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	NPAS3	Q8IXF0	933 aa		7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	TRMT44	Q8IYL2	757 aa	Known RBP	7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	7.43	□□□□□ -1.22	1e-7	■■□□□ 14.2
VAPA-208	ENST00000584796	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	GPBP1L1	Q9HC44	474 aa	Predicted RBP	7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	NXF1	Q9UBU9	619 aa	Known RBP	7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	MAP4K5	Q9Y4K4	846 aa		7.43	□□□□□ -1.22
VAPA-208	ENST00000584796	CTDSPL2	Q05D32	466 aa		7.42	□□□□□ -1.22
VAPA-208	ENST00000584796	FBXO31	Q5XUX0	539 aa	Predicted RBP	7.42	□□□□□ -1.22
VAPA-208	ENST00000584796	ITPKC	Q96DU7	683 aa		7.42	□□□□□ -1.22
VAPA-208	ENST00000584796	BCAN	Q96GW7	911 aa		7.42	□□□□□ -1.22
VAPA-208	ENST00000584796	DDRGK1	Q96HY6	314 aa		7.42	□□□□□ -1.22
VAPA-208	ENST00000584796	ZIC2	O95409	532 aa	Predicted RBP	7.41	□□□□□ -1.22
VAPA-208	ENST00000584796	SCARF1	Q14162	830 aa		7.41	□□□□□ -1.22
VAPA-208	ENST00000584796	PPP2R2D	Q66LE6	453 aa		7.41	□□□□□ -1.22
VAPA-208	ENST00000584796	FAM117A	Q9C073	453 aa		7.41	□□□□□ -1.22
VAPA-208	ENST00000584796	ZFAND3	Q9H8U3	227 aa		7.41	□□□□□ -1.22
VAPA-208	ENST00000584796	PURB	Q96QR8	312 aa	Known RBP	7.4	□□□□□ -1.22
VAPA-208	ENST00000584796		H3BM21	787 aa		7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	FSHR	P23945	695 aa		7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	INSM1	Q01101	510 aa	Predicted RBP	7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	PROCA1	Q8NCQ7	364 aa	Predicted RBP	7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	SLC16A10	Q8TF71	515 aa		7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	LRRN4	Q8WUT4	740 aa		7.39	□□□□□ -1.23
VAPA-208	ENST00000584796	MAGEB6P1	A0A0J9YX57	407 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	ERFE	Q4G0M1	354 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	PDXDC2P	Q6P474	469 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	VASH1	Q7L8A9	365 aa	Predicted RBP	7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	MEIOB	Q8N635	442 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	STK17A	Q9UEE5	414 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	FKBPL	Q9UIM3	349 aa		7.38	□□□□□ -1.23
VAPA-208	ENST00000584796	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.37	□□□□□ -1.23
VAPA-208	ENST00000584796	CARD14	Q9BXL6	1004 aa		7.37	□□□□□ -1.23
VAPA-208	ENST00000584796	IRF7	Q92985	503 aa		7.36	□□□□□ -1.23
VAPA-208	ENST00000584796	VEGFB	P49765	207 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	NR6A1	Q15406	480 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	CCDC116	Q8IYX3	515 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	LINC00528	Q8N1L1	170 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	ARHGAP9	Q9BRR9	750 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	EMILIN1	Q9Y6C2	1016 aa		7.35	□□□□□ -1.23
VAPA-208	ENST00000584796	ERBB4	Q15303	1308 aa		7.34	□□□□□ -1.23
VAPA-208	ENST00000584796	SOBP	A7XYQ1	873 aa		7.34	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms