RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 ANXA1P04083 346 aa13.21□□□□□ -0.3
RFFL-212ENST00000584655 PPIP5K1Q6PFW1 1433 aa13.2□□□□□ -0.3
RFFL-212ENST00000584655 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
RFFL-212ENST00000584655 NOB1Q9ULX3 412 aaKnown RBP13.2□□□□□ -0.3
RFFL-212ENST00000584655 MSH5O43196 834 aa13.2□□□□□ -0.3
RFFL-212ENST00000584655 SSH1Q8WYL5 1049 aa13.2□□□□□ -0.3
RFFL-212ENST00000584655 DIP2CQ9Y2E4 1556 aa13.2□□□□□ -0.3
RFFL-212ENST00000584655 LRPPRCP42704 1394 aaKnown RBP13.19□□□□□ -0.3
RFFL-212ENST00000584655 ASXL1Q8IXJ9 1541 aa13.19□□□□□ -0.3
RFFL-212ENST00000584655 PDE3BQ13370 1112 aa13.19□□□□□ -0.3
RFFL-212ENST00000584655 IGHDP01880 384 aa13.19□□□□□ -0.3
RFFL-212ENST00000584655 MADDQ8WXG6 1647 aa13.19□□□□□ -0.3
RFFL-212ENST00000584655 SPHKAPQ2M3C7 1700 aa13.18□□□□□ -0.3
RFFL-212ENST00000584655 RTF1Q92541 710 aaKnown RBP13.18□□□□□ -0.3
RFFL-212ENST00000584655 PIP4K2AP48426 406 aaPredicted RBP13.18□□□□□ -0.3
RFFL-212ENST00000584655 ATAD2Q6PL18 1390 aa13.17□□□□□ -0.3
RFFL-212ENST00000584655 SETD1BQ9UPS6 1966 aaKnown RBP13.17□□□□□ -0.3
RFFL-212ENST00000584655 MYH16Q9H6N6 1097 aa13.17□□□□□ -0.3
RFFL-212ENST00000584655 TET3O43151 1660 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 ANKRD36BQ8N2N9 1353 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 MROH1Q8NDA8 1641 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 F6X3S4 739 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 MROH2AA6NES4 1674 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 PDE4AP27815 886 aa13.16□□□□□ -0.3
RFFL-212ENST00000584655 KAT6BQ8WYB5 2073 aa13.15□□□□□ -0.3
RFFL-212ENST00000584655 RARSP54136 660 aaKnown RBP13.15□□□□□ -0.3
RFFL-212ENST00000584655 CCDC9Q9Y3X0 531 aaKnown RBP13.15□□□□□ -0.3
RFFL-212ENST00000584655 TTC21BQ7Z4L5 1316 aa13.15□□□□□ -0.3
RFFL-212ENST00000584655 EIF4A2Q14240 407 aaKnown RBP13.15□□□□□ -0.3
RFFL-212ENST00000584655 RTL5Q5HYW3 569 aaPredicted RBP13.15□□□□□ -0.3
RFFL-212ENST00000584655 TMEM2Q9UHN6 1383 aa13.15□□□□□ -0.3
RFFL-212ENST00000584655 LNPKQ9C0E8 428 aa13.15□□□□□ -0.3
RFFL-212ENST00000584655 NLRP2Q9NX02 1062 aa13.15□□□□□ -0.3
RFFL-212ENST00000584655 TPRNQ4KMQ1 711 aa13.14□□□□□ -0.31
RFFL-212ENST00000584655 STRN4Q9NRL3 753 aa13.14□□□□□ -0.31
RFFL-212ENST00000584655 C8orf58Q8NAV2 365 aa13.13□□□□□ -0.31
RFFL-212ENST00000584655 TRIM35Q9UPQ4 493 aa13.13□□□□□ -0.31
RFFL-212ENST00000584655 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
RFFL-212ENST00000584655 PCDHB15Q9Y5E8 787 aa13.13□□□□□ -0.31
RFFL-212ENST00000584655 MAP3K19Q56UN5 1328 aa13.13□□□□□ -0.31
RFFL-212ENST00000584655 TMEM57Q8N5G2 664 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 MPRIPQ6WCQ1 1025 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 PHF8Q9UPP1 1060 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 KIF1BO60333 1816 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 A2ML1A8K2U0 1454 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 DIP2BQ9P265 1576 aa13.12□□□□□ -0.31
RFFL-212ENST00000584655 TSPYL4Q9UJ04 414 aa13.11□□□□□ -0.31
RFFL-212ENST00000584655 SYNMO15061 1565 aa13.11□□□□□ -0.31
RFFL-212ENST00000584655 MAP3K4Q9Y6R4 1608 aa13.11□□□□□ -0.31
RFFL-212ENST00000584655 AIMP1Q12904 312 aaKnown RBP13.11□□□□□ -0.31
RFFL-212ENST00000584655 DZIP1LQ8IYY4 767 aaKnown RBP13.11□□□□□ -0.31
RFFL-212ENST00000584655 ZKSCAN2Q63HK3 967 aa13.1□□□□□ -0.31
RFFL-212ENST00000584655 FOXD4L1Q9NU39 408 aa13.1□□□□□ -0.31
RFFL-212ENST00000584655 TWISTNBQ3B726 338 aaPredicted RBP13.1□□□□□ -0.31
RFFL-212ENST00000584655 JARID2Q92833 1246 aaPredicted RBP13.1□□□□□ -0.31
RFFL-212ENST00000584655 MBIPQ9NS73 344 aa13.1□□□□□ -0.31
RFFL-212ENST00000584655 TRIM27P14373 513 aa13.1□□□□□ -0.31
RFFL-212ENST00000584655 ATF3P18847 181 aa13.1□□□□□ -0.31
RFFL-212ENST00000584655 EIF2AK4Q9P2K8 1649 aaKnown RBP13.1□□□□□ -0.31
RFFL-212ENST00000584655 SLKQ9H2G2 1235 aaPredicted RBP13.1□□□□□ -0.31
RFFL-212ENST00000584655 CLTCQ00610 1675 aaKnown RBP13.09□□□□□ -0.31
RFFL-212ENST00000584655 PIP4K2BP78356 416 aa13.09□□□□□ -0.31
RFFL-212ENST00000584655 ARAP3Q8WWN8 1544 aa13.08□□□□□ -0.32
RFFL-212ENST00000584655 MFAP1P55081 439 aaKnown RBP13.08□□□□□ -0.32
RFFL-212ENST00000584655 EYA1Q99502 592 aa13.08□□□□□ -0.32
RFFL-212ENST00000584655 SIGLEC1Q9BZZ2 1709 aa13.08□□□□□ -0.32
RFFL-212ENST00000584655 ANKRD45Q5TZF3 282 aa13.08□□□□□ -0.32
RFFL-212ENST00000584655 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
RFFL-212ENST00000584655 MTHFSDQ2M296 383 aaKnown RBP13.08□□□□□ -0.32
RFFL-212ENST00000584655 NFE2L2Q16236 605 aa13.07□□□□□ -0.32
RFFL-212ENST00000584655 TSHZ3Q63HK5 1081 aa13.07□□□□□ -0.32
RFFL-212ENST00000584655 RSPH6AQ9H0K4 717 aa13.07□□□□□ -0.32
RFFL-212ENST00000584655 RTN4Q9NQC3 1192 aaKnown RBP13.07□□□□□ -0.32
RFFL-212ENST00000584655 TAOK2Q9UL54 1235 aa13.06□□□□□ -0.32
RFFL-212ENST00000584655 ADGRB3O60242 1522 aa13.06□□□□□ -0.32
RFFL-212ENST00000584655 TULP4Q9NRJ4 1543 aa13.06□□□□□ -0.32
RFFL-212ENST00000584655 SYTL4Q96C24 671 aaPredicted RBP13.06□□□□□ -0.32
RFFL-212ENST00000584655 DDX54Q8TDD1 881 aaKnown RBP13.06□□□□□ -0.32
RFFL-212ENST00000584655 IL13P35225 146 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 SLC39A6Q13433 755 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 NUTM2BA6NNL0 878 aaPredicted RBP13.05□□□□□ -0.32
RFFL-212ENST00000584655 NUTM2EB1AL46 878 aaPredicted RBP13.05□□□□□ -0.32
RFFL-212ENST00000584655 FKBP5Q13451 457 aaPredicted RBP13.05□□□□□ -0.32
RFFL-212ENST00000584655 NUTM2AQ8IVF1 878 aaPredicted RBP13.05□□□□□ -0.32
RFFL-212ENST00000584655 PIK3C2BO00750 1634 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 FCHSD2O94868 740 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 ZNF692Q9BU19 519 aaPredicted RBP13.05□□□□□ -0.32
RFFL-212ENST00000584655 PDZRN3Q9UPQ7 1066 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 GLI2P10070 1586 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 CAMSAP1Q5T5Y3 1602 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 MYO5BQ9ULV0 1848 aa13.05□□□□□ -0.32
RFFL-212ENST00000584655 SMARCA5O60264 1052 aaPredicted RBP13.04□□□□□ -0.32
RFFL-212ENST00000584655 SEC24BO95487 1268 aa13.04□□□□□ -0.32
RFFL-212ENST00000584655 KCNQ3O43525 872 aa13.04□□□□□ -0.32
RFFL-212ENST00000584655 G2E3Q7L622 706 aa13.04□□□□□ -0.32
RFFL-212ENST00000584655 MYOM2P54296 1465 aa13.04□□□□□ -0.32
RFFL-212ENST00000584655 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
RFFL-212ENST00000584655 NEXMIFQ5QGS0 1516 aa13.03□□□□□ -0.32
RFFL-212ENST00000584655 KRT28Q7Z3Y7 464 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms