RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 BCANQ96GW7 911 aa10.37□□□□□ -0.75
SMCHD1-208ENST00000583344 TLL2Q9Y6L7 1015 aa10.37□□□□□ -0.75
SMCHD1-208ENST00000583344 NUTM2BA6NNL0 878 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 NUTM2EB1AL46 878 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 F12P00748 615 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 NUTM2DQ5VT03 806 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 NUTM2AQ8IVF1 878 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 ATP13A2Q9NQ11 1180 aa10.36□□□□□ -0.75
SMCHD1-208ENST00000583344 C11orf95C9JLR9 678 aaPredicted RBP10.35□□□□□ -0.75
SMCHD1-208ENST00000583344 SLC24A1O60721 1099 aa10.35□□□□□ -0.75
SMCHD1-208ENST00000583344 LILRB3O75022 631 aa10.35□□□□□ -0.75
SMCHD1-208ENST00000583344 CLK2P49760 499 aaKnown RBP10.35□□□□□ -0.75
SMCHD1-208ENST00000583344 POLR3EQ9NVU0 708 aa10.35□□□□□ -0.75
SMCHD1-208ENST00000583344 TUSC1Q2TAM9 212 aa10.34□□□□□ -0.75
SMCHD1-208ENST00000583344 RTL5Q5HYW3 569 aaPredicted RBP10.34□□□□□ -0.75
SMCHD1-208ENST00000583344 GPBP1L1Q9HC44 474 aaPredicted RBP10.34□□□□□ -0.75
SMCHD1-208ENST00000583344 WASF2Q9Y6W5 498 aa10.34□□□□□ -0.75
SMCHD1-208ENST00000583344 FOXJ1Q92949 421 aa10.31□□□□□ -0.76
SMCHD1-208ENST00000583344 SNRPBP14678 240 aaKnown RBP10.3□□□□□ -0.76
SMCHD1-208ENST00000583344 VARSP26640 1264 aaKnown RBP10.3□□□□□ -0.76
SMCHD1-208ENST00000583344 RSPH6AQ9H0K4 717 aa10.3□□□□□ -0.76
SMCHD1-208ENST00000583344 KDM4CQ9H3R0 1056 aa10.3□□□□□ -0.76
SMCHD1-208ENST00000583344 BMP1P13497 986 aa10.28□□□□□ -0.76
SMCHD1-208ENST00000583344 HELBQ8NG08 1087 aaPredicted RBP10.28□□□□□ -0.76
SMCHD1-208ENST00000583344 CAPN5O15484 640 aaPredicted RBP10.27□□□□□ -0.77
SMCHD1-208ENST00000583344 TRIM47Q96LD4 638 aa10.27□□□□□ -0.77
SMCHD1-208ENST00000583344 FAM117AQ9C073 453 aa10.27□□□□□ -0.77
SMCHD1-208ENST00000583344 NNTQ13423 1086 aa10.26□□□□□ -0.77
SMCHD1-208ENST00000583344 C4orf48Q5BLP8 95 aa10.26□□□□□ -0.77
SMCHD1-208ENST00000583344 FBXO31Q5XUX0 539 aaPredicted RBP10.26□□□□□ -0.77
SMCHD1-208ENST00000583344 FAM174AQ8TBP5 190 aa10.26□□□□□ -0.77
SMCHD1-208ENST00000583344 PLEKHG3A1L390 1219 aa10.25□□□□□ -0.77
SMCHD1-208ENST00000583344 AGERQ15109 404 aa10.25□□□□□ -0.77
SMCHD1-208ENST00000583344 TRIM46Q7Z4K8 759 aa10.25□□□□□ -0.77
SMCHD1-208ENST00000583344 SENP2Q9HC62 589 aa10.25□□□□□ -0.77
SMCHD1-208ENST00000583344 TREML4Q6UXN2 200 aa10.24□□□□□ -0.77
SMCHD1-208ENST00000583344 MPNDQ8N594 471 aa10.24□□□□□ -0.77
SMCHD1-208ENST00000583344 CTDSPL2Q05D32 466 aa10.23□□□□□ -0.77
SMCHD1-208ENST00000583344 ARID5BQ14865 1188 aa10.23□□□□□ -0.77
SMCHD1-208ENST00000583344 SH3D19Q5HYK7 790 aa10.23□□□□□ -0.77
SMCHD1-208ENST00000583344 LCE2AQ5TA79 106 aaPredicted RBP10.23□□□□□ -0.77
SMCHD1-208ENST00000583344 PROCA1Q8NCQ7 364 aaPredicted RBP10.23□□□□□ -0.77
SMCHD1-208ENST00000583344 ADH1CP00326 375 aa10.22□□□□□ -0.77
SMCHD1-208ENST00000583344 SKIV2LQ15477 1246 aaKnown RBP10.22□□□□□ -0.77
SMCHD1-208ENST00000583344 BPHLQ86WA6 291 aaPredicted RBP10.21□□□□□ -0.77
SMCHD1-208ENST00000583344 KIFC2Q96AC6 838 aa10.21□□□□□ -0.77
SMCHD1-208ENST00000583344 DDRGK1Q96HY6 314 aa10.21□□□□□ -0.77
SMCHD1-208ENST00000583344 ATP1B4Q9UN42 357 aaPredicted RBP10.21□□□□□ -0.77
SMCHD1-208ENST00000583344 WDR4P57081 412 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-208ENST00000583344 LRRN4Q8WUT4 740 aa10.2□□□□□ -0.78
SMCHD1-208ENST00000583344 CDK15Q96Q40 435 aa10.2□□□□□ -0.78
SMCHD1-208ENST00000583344 TIMP2P16035 220 aa10.19□□□□□ -0.78
SMCHD1-208ENST00000583344 NFX1Q12986 1120 aaKnown RBP10.19□□□□□ -0.78
SMCHD1-208ENST00000583344 NBPF14Q5TI25 921 aa10.19□□□□□ -0.78
SMCHD1-208ENST00000583344 ARMC2Q8NEN0 867 aa10.19□□□□□ -0.78
SMCHD1-208ENST00000583344 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.19□□□□□ -0.78
SMCHD1-208ENST00000583344 MAGEB6P1A0A0J9YX57 407 aa10.18□□□□□ -0.78
SMCHD1-208ENST00000583344 WFS1O76024 890 aa10.18□□□□□ -0.78
SMCHD1-208ENST00000583344 NR3C2P08235 984 aa10.18□□□□□ -0.78
SMCHD1-208ENST00000583344 SH3BP5LQ7L8J4 393 aa10.18□□□□□ -0.78
SMCHD1-208ENST00000583344 SH3RF1Q7Z6J0 888 aa10.18□□□□□ -0.78
SMCHD1-208ENST00000583344 C1QTNF2Q9BXJ5 285 aa10.17□□□□□ -0.78
SMCHD1-208ENST00000583344 KLF16Q9BXK1 252 aaPredicted RBP10.17□□□□□ -0.78
SMCHD1-208ENST00000583344 CARD14Q9BXL6 1004 aa10.17□□□□□ -0.78
SMCHD1-208ENST00000583344 GRM5P41594 1212 aa10.16□□□□□ -0.78
SMCHD1-208ENST00000583344 ZFAND3Q9H8U3 227 aa10.16□□□□□ -0.78
SMCHD1-208ENST00000583344 LCE2CQ5TA81 110 aa10.15□□□□□ -0.78
SMCHD1-208ENST00000583344 ZFP42Q96MM3 310 aa10.15□□□□□ -0.78
SMCHD1-208ENST00000583344 TERTO14746 1132 aaKnown RBP10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 ZIC2O95409 532 aaPredicted RBP10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 FSHRP23945 695 aa10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 NR5A1Q13285 461 aa10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 PPP2R2DQ66LE6 453 aa10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 MRPL14Q6P1L8 145 aaKnown RBP10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 ITPKCQ96DU7 683 aa10.14□□□□□ -0.79
SMCHD1-208ENST00000583344 AP1G2O75843 785 aa10.13□□□□□ -0.79
SMCHD1-208ENST00000583344 NR6A1Q15406 480 aa10.13□□□□□ -0.79
SMCHD1-208ENST00000583344 PURBQ96QR8 312 aaKnown RBP10.13□□□□□ -0.79
SMCHD1-208ENST00000583344 ERFEQ4G0M1 354 aa10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 VASH1Q7L8A9 365 aaPredicted RBP10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 TRMT44Q8IYL2 757 aaKnown RBP10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 GPKOWQ92917 476 aaPredicted RBP eCLIP10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 FKBPLQ9UIM3 349 aa10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 MAP4K5Q9Y4K4 846 aa10.11□□□□□ -0.79
SMCHD1-208ENST00000583344 SCARF1Q14162 830 aa10.09□□□□□ -0.79
SMCHD1-208ENST00000583344 NEUROD2Q15784 382 aa10.09□□□□□ -0.79
SMCHD1-208ENST00000583344 EPS8L1Q8TE68 723 aa10.09□□□□□ -0.79
SMCHD1-208ENST00000583344 ARHGAP9Q9BRR9 750 aa10.09□□□□□ -0.79
SMCHD1-208ENST00000583344 HMX1Q9NP08 348 aaPredicted RBP10.09□□□□□ -0.79
SMCHD1-208ENST00000583344 SOBPA7XYQ1 873 aa10.08□□□□□ -0.8
SMCHD1-208ENST00000583344 USP17L8P0C7I0 530 aa10.08□□□□□ -0.8
SMCHD1-208ENST00000583344 VEGFBP49765 207 aa10.08□□□□□ -0.8
SMCHD1-208ENST00000583344 C6orf118Q5T5N4 469 aa10.08□□□□□ -0.8
SMCHD1-208ENST00000583344 PDXDC2PQ6P474 469 aa10.08□□□□□ -0.8
SMCHD1-208ENST00000583344 RFC5P40937 340 aa10.07□□□□□ -0.8
SMCHD1-208ENST00000583344 NXF1Q9UBU9 619 aaKnown RBP10.07□□□□□ -0.8
SMCHD1-208ENST00000583344 OCSTAMPQ9BR26 566 aa10.06□□□□□ -0.8
SMCHD1-208ENST00000583344 CCDC116Q8IYX3 515 aa10.05□□□□□ -0.8
SMCHD1-208ENST00000583344 MEIOBQ8N635 442 aa10.05□□□□□ -0.8
SMCHD1-208ENST00000583344 IL27Q8NEV9 243 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 614.5 ms