RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 CANXP27824 592 aaKnown RBP17.4■□□□□ 0.38
ITGB4-207ENST00000580542 CEBPAP49715 358 aaPredicted RBP17.39■□□□□ 0.37
ITGB4-207ENST00000580542 NUTM2DQ5VT03 806 aaPredicted RBP17.39■□□□□ 0.37
ITGB4-207ENST00000580542 YTHDC2Q9H6S0 1430 aaKnown RBP17.39■□□□□ 0.37
ITGB4-207ENST00000580542 PRDM10Q9NQV6 1147 aa17.38■□□□□ 0.37
ITGB4-207ENST00000580542 CEP170BQ9Y4F5 1589 aaPredicted RBP17.38■□□□□ 0.37
ITGB4-207ENST00000580542 GTF2E1P29083 439 aaPredicted RBP17.38■□□□□ 0.37
ITGB4-207ENST00000580542 CDCA8Q53HL2 280 aa17.37■□□□□ 0.37
ITGB4-207ENST00000580542 MED14O60244 1454 aa17.37■□□□□ 0.37
ITGB4-207ENST00000580542 RIPK4P57078 832 aa17.37■□□□□ 0.37
ITGB4-207ENST00000580542 TMEM132EQ6IEE7 984 aa17.37■□□□□ 0.37
ITGB4-207ENST00000580542 CHMP4BQ9H444 224 aaKnown RBP17.37■□□□□ 0.37
ITGB4-207ENST00000580542 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
ITGB4-207ENST00000580542 MCM4P33991 863 aa17.36■□□□□ 0.37
ITGB4-207ENST00000580542 TRAK2O60296 914 aa17.36■□□□□ 0.37
ITGB4-207ENST00000580542 PLEKHG1Q9ULL1 1385 aa17.36■□□□□ 0.37
ITGB4-207ENST00000580542 NCLP19338 710 aaKnown RBP17.35■□□□□ 0.37
ITGB4-207ENST00000580542 HDGFP51858 240 aaKnown RBP17.35■□□□□ 0.37
ITGB4-207ENST00000580542 C20orf194Q5TEA3 1177 aa17.35■□□□□ 0.37
ITGB4-207ENST00000580542 PUS7Q96PZ0 661 aaKnown RBP17.35■□□□□ 0.37
ITGB4-207ENST00000580542 ANTXR1Q9H6X2 564 aa17.35■□□□□ 0.37
ITGB4-207ENST00000580542 SETD1BQ9UPS6 1966 aaKnown RBP17.35■□□□□ 0.37
ITGB4-207ENST00000580542 TECPR2O15040 1411 aa17.35■□□□□ 0.37
ITGB4-207ENST00000580542 TULP4Q9NRJ4 1543 aa17.35■□□□□ 0.37
ITGB4-207ENST00000580542 TAF7LQ5H9L4 462 aa17.34■□□□□ 0.37
ITGB4-207ENST00000580542 ADAMTS13Q76LX8 1427 aa17.34■□□□□ 0.37
ITGB4-207ENST00000580542 PLEKHH1Q9ULM0 1364 aa17.34■□□□□ 0.37
ITGB4-207ENST00000580542 CPS1P31327 1500 aa17.33■□□□□ 0.37
ITGB4-207ENST00000580542 PPP2R1AP30153 589 aa17.33■□□□□ 0.36
ITGB4-207ENST00000580542 ABCC11Q96J66 1382 aa17.33■□□□□ 0.36
ITGB4-207ENST00000580542 TRAK1Q9UPV9 953 aa17.33■□□□□ 0.36
ITGB4-207ENST00000580542 DIP2AQ14689 1571 aa17.33■□□□□ 0.36
ITGB4-207ENST00000580542 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.31■□□□□ 0.36
ITGB4-207ENST00000580542 SPRYD3Q8NCJ5 442 aa17.31■□□□□ 0.36
ITGB4-207ENST00000580542 USP19O94966 1318 aa17.31■□□□□ 0.36
ITGB4-207ENST00000580542 OFD1O75665 1012 aa17.31■□□□□ 0.36
ITGB4-207ENST00000580542 AMER1Q5JTC6 1135 aaPredicted RBP17.31■□□□□ 0.36
ITGB4-207ENST00000580542 DUSP27Q5VZP5 1158 aa17.31■□□□□ 0.36
ITGB4-207ENST00000580542 ZNF521Q96K83 1311 aa17.3■□□□□ 0.36
ITGB4-207ENST00000580542 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
ITGB4-207ENST00000580542 KNSTRNQ9Y448 316 aa17.3■□□□□ 0.36
ITGB4-207ENST00000580542 SIRT1Q96EB6 747 aa17.29■□□□□ 0.36
ITGB4-207ENST00000580542 R3HCC1Q9Y3T6 440 aaKnown RBP17.29■□□□□ 0.36
ITGB4-207ENST00000580542 LTKP29376 864 aa17.28■□□□□ 0.36
ITGB4-207ENST00000580542 METP08581 1390 aa17.28■□□□□ 0.36
ITGB4-207ENST00000580542 FAM135BQ49AJ0 1406 aa17.28■□□□□ 0.36
ITGB4-207ENST00000580542 TNNT2P45379 298 aaPredicted RBP17.28■□□□□ 0.36
ITGB4-207ENST00000580542 WDR43Q15061 677 aaKnown RBP eCLIP17.28■□□□□ 0.36
ITGB4-207ENST00000580542 ISY1Q9ULR0 285 aaKnown RBP17.28■□□□□ 0.36
ITGB4-207ENST00000580542 MSNP26038 577 aaKnown RBP17.28■□□□□ 0.36
ITGB4-207ENST00000580542 NPC1L1Q9UHC9 1359 aa17.27■□□□□ 0.36
ITGB4-207ENST00000580542 TERF1P54274 439 aa17.27■□□□□ 0.36
ITGB4-207ENST00000580542 MTERF4Q7Z6M4 381 aaKnown RBP17.27■□□□□ 0.36
ITGB4-207ENST00000580542 THEMISQ8N1K5 641 aaPredicted RBP17.27■□□□□ 0.36
ITGB4-207ENST00000580542 USP32Q8NFA0 1604 aa17.27■□□□□ 0.35
ITGB4-207ENST00000580542 DMTNQ08495 405 aa17.27■□□□□ 0.35
ITGB4-207ENST00000580542 UTP14CQ5TAP6 766 aaKnown RBP17.27■□□□□ 0.35
ITGB4-207ENST00000580542 SEC24BO95487 1268 aa17.26■□□□□ 0.35
ITGB4-207ENST00000580542 ZSCAN30Q86W11 494 aa17.25■□□□□ 0.35
ITGB4-207ENST00000580542 ADGRB2O60241 1585 aa17.24■□□□□ 0.35
ITGB4-207ENST00000580542 GOLGA2Q08379 1002 aa17.24■□□□□ 0.35
ITGB4-207ENST00000580542 UQCRHLA0A096LP55 91 aa17.23■□□□□ 0.35
ITGB4-207ENST00000580542 UQCRHP07919 91 aa17.23■□□□□ 0.35
ITGB4-207ENST00000580542 IPO4Q8TEX9 1081 aaKnown RBP17.23■□□□□ 0.35
ITGB4-207ENST00000580542 TBC1D2Q9BYX2 928 aa17.23■□□□□ 0.35
ITGB4-207ENST00000580542 XRN1Q8IZH2 1706 aaKnown RBP17.23■□□□□ 0.35
ITGB4-207ENST00000580542 ANP32BQ92688 251 aaKnown RBP17.23■□□□□ 0.35
ITGB4-207ENST00000580542 EVC2Q86UK5 1308 aa17.23■□□□□ 0.35
ITGB4-207ENST00000580542 PPP4R3BQ5MIZ7 849 aa17.23■□□□□ 0.35
ITGB4-207ENST00000580542 UPF2Q9HAU5 1272 aaKnown RBP17.23■□□□□ 0.35
ITGB4-207ENST00000580542 NINLQ9Y2I6 1382 aa17.22■□□□□ 0.35
ITGB4-207ENST00000580542 TXNDC2Q86VQ3 553 aa17.22■□□□□ 0.35
ITGB4-207ENST00000580542 EID1Q9Y6B2 187 aa17.22■□□□□ 0.35
ITGB4-207ENST00000580542 SLFN5Q08AF3 891 aa17.22■□□□□ 0.35
ITGB4-207ENST00000580542 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
ITGB4-207ENST00000580542 TBX22Q9Y458 520 aa17.2■□□□□ 0.34
ITGB4-207ENST00000580542 PTPRUQ92729 1446 aa17.2■□□□□ 0.34
ITGB4-207ENST00000580542 DDX11L8A8MPP1 907 aa17.2■□□□□ 0.34
ITGB4-207ENST00000580542 STK26Q9P289 416 aa17.2■□□□□ 0.34
ITGB4-207ENST00000580542 CCDC173Q0VFZ6 552 aa17.19■□□□□ 0.34
ITGB4-207ENST00000580542 PAXIP1Q6ZW49 1069 aaPredicted RBP17.19■□□□□ 0.34
ITGB4-207ENST00000580542 TRMT2AQ8IZ69 625 aaKnown RBP17.19■□□□□ 0.34
ITGB4-207ENST00000580542 CHMP5Q9NZZ3 219 aa17.19■□□□□ 0.34
ITGB4-207ENST00000580542 PTCH1Q13635 1447 aa17.19■□□□□ 0.34
ITGB4-207ENST00000580542 CCDC146Q8IYE0 955 aa17.19■□□□□ 0.34
ITGB4-207ENST00000580542 PIK3R4Q99570 1358 aa17.19■□□□□ 0.34
ITGB4-207ENST00000580542 GAS2L3Q86XJ1 694 aa17.18■□□□□ 0.34
ITGB4-207ENST00000580542 ZSCAN20P17040 1043 aaPredicted RBP17.18■□□□□ 0.34
ITGB4-207ENST00000580542 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.18■□□□□ 0.34
ITGB4-207ENST00000580542 SPINK5Q9NQ38 1064 aaPredicted RBP17.18■□□□□ 0.34
ITGB4-207ENST00000580542 ATAD2Q6PL18 1390 aa17.17■□□□□ 0.34
ITGB4-207ENST00000580542 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.17■□□□□ 0.34
ITGB4-207ENST00000580542 CHD2O14647 1828 aaKnown RBP17.16■□□□□ 0.34
ITGB4-207ENST00000580542 CD163L1Q9NR16 1453 aa17.16■□□□□ 0.34
ITGB4-207ENST00000580542 ANKRD36BQ8N2N9 1353 aa17.16■□□□□ 0.34
ITGB4-207ENST00000580542 DYNC1I1O14576 645 aa17.16■□□□□ 0.34
ITGB4-207ENST00000580542 CCDC94Q9BW85 323 aaPredicted RBP17.16■□□□□ 0.34
ITGB4-207ENST00000580542 ROBO2Q9HCK4 1378 aa17.15■□□□□ 0.34
ITGB4-207ENST00000580542 CARD14Q9BXL6 1004 aa17.15■□□□□ 0.34
ITGB4-207ENST00000580542 NKTRP30414 1462 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms