RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 USP6P35125 1406 aa20.42■□□□□ 0.86
MKS1-207ENST00000578789 PHRF1Q9P1Y6 1649 aaKnown RBP20.42■□□□□ 0.86
MKS1-207ENST00000578789 NRKQ7Z2Y5 1582 aa20.41■□□□□ 0.86
MKS1-207ENST00000578789 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.41■□□□□ 0.86
MKS1-207ENST00000578789 LMOD2Q6P5Q4 547 aa20.4■□□□□ 0.86
MKS1-207ENST00000578789 MON2Q7Z3U7 1717 aa20.4■□□□□ 0.86
MKS1-207ENST00000578789 PUS7Q96PZ0 661 aaKnown RBP20.4■□□□□ 0.86
MKS1-207ENST00000578789 SSH2Q76I76 1423 aa20.39■□□□□ 0.85
MKS1-207ENST00000578789 SLC24A1O60721 1099 aa20.39■□□□□ 0.85
MKS1-207ENST00000578789 CPSF1Q10570 1443 aaKnown RBP20.38■□□□□ 0.85
MKS1-207ENST00000578789 PAK3O75914 559 aaPredicted RBP20.38■□□□□ 0.85
MKS1-207ENST00000578789 FNBP4Q8N3X1 1017 aaPredicted RBP20.38■□□□□ 0.85
MKS1-207ENST00000578789 NGLY1Q96IV0 654 aa20.38■□□□□ 0.85
MKS1-207ENST00000578789 PLCH1Q4KWH8 1693 aa20.38■□□□□ 0.85
MKS1-207ENST00000578789 SLIT2O94813 1529 aa20.37■□□□□ 0.85
MKS1-207ENST00000578789 NWD2Q9ULI1 1742 aa20.37■□□□□ 0.85
MKS1-207ENST00000578789 CABLES1Q8TDN4 633 aa20.37■□□□□ 0.85
MKS1-207ENST00000578789 SOCS7O14512 581 aa20.36■□□□□ 0.85
MKS1-207ENST00000578789 CD163L1Q9NR16 1453 aa20.36■□□□□ 0.85
MKS1-207ENST00000578789 PIK3C2AO00443 1686 aa20.35■□□□□ 0.85
MKS1-207ENST00000578789 BCL9LQ86UU0 1499 aa20.35■□□□□ 0.85
MKS1-207ENST00000578789 COL14A1Q05707 1796 aaKnown RBP20.34■□□□□ 0.85
MKS1-207ENST00000578789 HAP1P54257 671 aaPredicted RBP20.34■□□□□ 0.85
MKS1-207ENST00000578789 ATRNO75882 1429 aa20.34■□□□□ 0.85
MKS1-207ENST00000578789 NINLQ9Y2I6 1382 aa20.34■□□□□ 0.85
MKS1-207ENST00000578789 USP19O94966 1318 aa20.33■□□□□ 0.85
MKS1-207ENST00000578789 CDK12Q9NYV4 1490 aaPredicted RBP20.33■□□□□ 0.85
MKS1-207ENST00000578789 ZNF692Q9BU19 519 aaPredicted RBP20.33■□□□□ 0.85
MKS1-207ENST00000578789 USP21Q9UK80 565 aa20.33■□□□□ 0.85
MKS1-207ENST00000578789 NRAPQ86VF7 1730 aa20.32■□□□□ 0.84
MKS1-207ENST00000578789 USP54Q70EL1 1684 aa20.31■□□□□ 0.84
MKS1-207ENST00000578789 SLIT3O75094 1523 aa20.31■□□□□ 0.84
MKS1-207ENST00000578789 PLEKHG5O94827 1062 aa20.3■□□□□ 0.84
MKS1-207ENST00000578789 TMF1P82094 1093 aa20.3■□□□□ 0.84
MKS1-207ENST00000578789 ABTB2Q8N961 1025 aa20.3■□□□□ 0.84
MKS1-207ENST00000578789 KTN1Q86UP2 1357 aaKnown RBP20.3■□□□□ 0.84
MKS1-207ENST00000578789 QTRT2Q9H974 415 aaKnown RBP20.29■□□□□ 0.84
MKS1-207ENST00000578789 TRPC5Q9UL62 973 aaPredicted RBP20.29■□□□□ 0.84
MKS1-207ENST00000578789 TTC21BQ7Z4L5 1316 aa20.28■□□□□ 0.84
MKS1-207ENST00000578789 TTC21AQ8NDW8 1320 aa20.28■□□□□ 0.84
MKS1-207ENST00000578789 RXRBP28702 533 aa20.28■□□□□ 0.84
MKS1-207ENST00000578789 NUTM2GQ5VZR2 741 aa20.28■□□□□ 0.84
MKS1-207ENST00000578789 MYOM1P52179 1685 aa20.27■□□□□ 0.84
MKS1-207ENST00000578789 A0A1W2PP64 1363 aa20.27■□□□□ 0.84
MKS1-207ENST00000578789 NLRP13Q86W25 1043 aa20.27■□□□□ 0.84
MKS1-207ENST00000578789 TMC1Q8TDI8 760 aa20.27■□□□□ 0.84
MKS1-207ENST00000578789 SLC12A5Q9H2X9 1139 aa20.27■□□□□ 0.84
MKS1-207ENST00000578789 EDC4Q6P2E9 1401 aaKnown RBP20.27■□□□□ 0.83
MKS1-207ENST00000578789 FAM83GA6ND36 823 aa20.26■□□□□ 0.83
MKS1-207ENST00000578789 RBM6P78332 1123 aaKnown RBP20.26■□□□□ 0.83
MKS1-207ENST00000578789 UNC5CLQ8IV45 518 aa20.26■□□□□ 0.83
MKS1-207ENST00000578789 CPDO75976 1380 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 KIAA0232Q92628 1395 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 CDCA8Q53HL2 280 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 HDGFL2Q7Z4V5 671 aaPredicted RBP20.25■□□□□ 0.83
MKS1-207ENST00000578789 RGS12O14924 1447 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 LMO7Q8WWI1 1683 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 GLI3P10071 1580 aa20.25■□□□□ 0.83
MKS1-207ENST00000578789 TERF2IPQ9NYB0 399 aa20.24■□□□□ 0.83
MKS1-207ENST00000578789 NLRP6P59044 892 aa20.23■□□□□ 0.83
MKS1-207ENST00000578789 EIF4G2P78344 907 aaKnown RBP eCLIP20.23■□□□□ 0.83
MKS1-207ENST00000578789 USP31Q70CQ4 1352 aa20.22■□□□□ 0.83
MKS1-207ENST00000578789 ANKRD36BQ8N2N9 1353 aa20.22■□□□□ 0.83
MKS1-207ENST00000578789 PRDM11Q9NQV5 511 aa20.22■□□□□ 0.83
MKS1-207ENST00000578789 HSPA5P11021 654 aaKnown RBP20.21■□□□□ 0.83
MKS1-207ENST00000578789 GCP02774 474 aa20.2■□□□□ 0.82
MKS1-207ENST00000578789 VPS72Q15906 364 aa20.2■□□□□ 0.82
MKS1-207ENST00000578789 GJD4Q96KN9 370 aaPredicted RBP20.2■□□□□ 0.82
MKS1-207ENST00000578789 NFAT5O94916 1531 aa20.2■□□□□ 0.82
MKS1-207ENST00000578789 ZC3H6P61129 1189 aaKnown RBP20.19■□□□□ 0.82
MKS1-207ENST00000578789 BTG4Q9NY30 223 aa20.19■□□□□ 0.82
MKS1-207ENST00000578789 COL18A1P39060 1754 aa20.18■□□□□ 0.82
MKS1-207ENST00000578789 OVOS2A0A0J9YW53 1432 aa20.18■□□□□ 0.82
MKS1-207ENST00000578789 OVOS2Q6IE36 1432 aa20.18■□□□□ 0.82
MKS1-207ENST00000578789 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.17■□□□□ 0.82
MKS1-207ENST00000578789 CAMTA1Q9Y6Y1 1673 aa20.16■□□□□ 0.82
MKS1-207ENST00000578789 CHRNA2Q15822 529 aa20.16■□□□□ 0.82
MKS1-207ENST00000578789 NME9Q86XW9 330 aa20.16■□□□□ 0.82
MKS1-207ENST00000578789 ABCC6O95255 1503 aa20.16■□□□□ 0.82
MKS1-207ENST00000578789 KCNH5Q8NCM2 988 aa20.15■□□□□ 0.82
MKS1-207ENST00000578789 KIF20BQ96Q89 1820 aa20.14■□□□□ 0.81
MKS1-207ENST00000578789 AATKQ6ZMQ8 1374 aa20.14■□□□□ 0.81
MKS1-207ENST00000578789 ZRANB1Q9UGI0 708 aa20.13■□□□□ 0.81
MKS1-207ENST00000578789 COL5A2P05997 1499 aaPredicted RBP20.12■□□□□ 0.81
MKS1-207ENST00000578789 LTN1O94822 1766 aa20.12■□□□□ 0.81
MKS1-207ENST00000578789 SPATA31A5Q5VU36 1347 aa20.11■□□□□ 0.81
MKS1-207ENST00000578789 SPATA31A7Q8IWB4 1347 aa20.11■□□□□ 0.81
MKS1-207ENST00000578789 THSD7AQ9UPZ6 1657 aa20.1■□□□□ 0.81
MKS1-207ENST00000578789 ARHGEF25Q86VW2 580 aa20.1■□□□□ 0.81
MKS1-207ENST00000578789 BRWD3Q6RI45 1802 aa20.1■□□□□ 0.81
MKS1-207ENST00000578789 RGPD5Q99666 1765 aa20.09■□□□□ 0.81
MKS1-207ENST00000578789 ONECUT3O60422 494 aaPredicted RBP20.09■□□□□ 0.81
MKS1-207ENST00000578789 CCDC9Q9Y3X0 531 aaKnown RBP20.09■□□□□ 0.81
MKS1-207ENST00000578789 NSD3Q9BZ95 1437 aa20.08■□□□□ 0.8
MKS1-207ENST00000578789 SPATA31A1Q5TZJ5 1347 aa20.07■□□□□ 0.8
MKS1-207ENST00000578789 STRN4Q9NRL3 753 aa20.07■□□□□ 0.8
MKS1-207ENST00000578789 SOX12O15370 315 aa20.05■□□□□ 0.8
MKS1-207ENST00000578789 COG3Q96JB2 828 aa20.05■□□□□ 0.8
MKS1-207ENST00000578789 CARD14Q9BXL6 1004 aa20.05■□□□□ 0.8
MKS1-207ENST00000578789 ZBTB7CA1YPR0 619 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms