RNA–Protein interactions for RNA: ENST00000578208.1

GGA3-204, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 3

Gene GGA3, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-204ENST00000578208 ABCA3Q99758 1704 aa16.41■□□□□ 0.22
GGA3-204ENST00000578208 FNBP4Q8N3X1 1017 aaPredicted RBP16.4■□□□□ 0.22
GGA3-204ENST00000578208 CABLES1Q8TDN4 633 aa16.4■□□□□ 0.22
GGA3-204ENST00000578208 QTRT2Q9H974 415 aaKnown RBP16.4■□□□□ 0.22
GGA3-204ENST00000578208 CABP1Q9NZU7 370 aa16.39■□□□□ 0.21
GGA3-204ENST00000578208 BRD4O60885 1362 aaPredicted RBP16.38■□□□□ 0.21
GGA3-204ENST00000578208 SLC24A1O60721 1099 aa16.38■□□□□ 0.21
GGA3-204ENST00000578208 TRPC5Q9UL62 973 aaPredicted RBP16.38■□□□□ 0.21
GGA3-204ENST00000578208 RBM6P78332 1123 aaKnown RBP16.37■□□□□ 0.21
GGA3-204ENST00000578208 CDK12Q9NYV4 1490 aaPredicted RBP16.36■□□□□ 0.21
GGA3-204ENST00000578208 USP47Q96K76 1375 aa16.36■□□□□ 0.21
GGA3-204ENST00000578208 USP6P35125 1406 aa16.36■□□□□ 0.21
GGA3-204ENST00000578208 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
GGA3-204ENST00000578208 ABTB2Q8N961 1025 aa16.35■□□□□ 0.21
GGA3-204ENST00000578208 ATRNO75882 1429 aa16.35■□□□□ 0.21
GGA3-204ENST00000578208 SLIT2O94813 1529 aa16.35■□□□□ 0.21
GGA3-204ENST00000578208 NUTM2GQ5VZR2 741 aa16.34■□□□□ 0.21
GGA3-204ENST00000578208 ZNF692Q9BU19 519 aaPredicted RBP16.34■□□□□ 0.21
GGA3-204ENST00000578208 PLCH1Q4KWH8 1693 aa16.34■□□□□ 0.21
GGA3-204ENST00000578208 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.33■□□□□ 0.21
GGA3-204ENST00000578208 CRYBG1Q9Y4K1 1723 aa16.33■□□□□ 0.21
GGA3-204ENST00000578208 UNC5CLQ8IV45 518 aa16.33■□□□□ 0.2
GGA3-204ENST00000578208 BCL9LQ86UU0 1499 aa16.33■□□□□ 0.2
GGA3-204ENST00000578208 PHRF1Q9P1Y6 1649 aaKnown RBP16.33■□□□□ 0.2
GGA3-204ENST00000578208 NLRP13Q86W25 1043 aa16.32■□□□□ 0.2
GGA3-204ENST00000578208 TMC1Q8TDI8 760 aa16.32■□□□□ 0.2
GGA3-204ENST00000578208 NWD2Q9ULI1 1742 aa16.32■□□□□ 0.2
GGA3-204ENST00000578208 COL14A1Q05707 1796 aaKnown RBP16.31■□□□□ 0.2
GGA3-204ENST00000578208 PUS7Q96PZ0 661 aaKnown RBP16.31■□□□□ 0.2
GGA3-204ENST00000578208 PRDM11Q9NQV5 511 aa16.31■□□□□ 0.2
GGA3-204ENST00000578208 AKAP12Q02952 1782 aa16.31■□□□□ 0.2
GGA3-204ENST00000578208 RGS12O14924 1447 aa16.3■□□□□ 0.2
GGA3-204ENST00000578208 KTN1Q86UP2 1357 aaKnown RBP16.3■□□□□ 0.2
GGA3-204ENST00000578208 HDGFL2Q7Z4V5 671 aaPredicted RBP16.3■□□□□ 0.2
GGA3-204ENST00000578208 TESK2Q96S53 571 aa16.3■□□□□ 0.2
GGA3-204ENST00000578208 TMF1P82094 1093 aa16.29■□□□□ 0.2
GGA3-204ENST00000578208 CCDC9Q9Y3X0 531 aaKnown RBP16.29■□□□□ 0.2
GGA3-204ENST00000578208 CPSF1Q10570 1443 aaKnown RBP16.28■□□□□ 0.2
GGA3-204ENST00000578208 NINLQ9Y2I6 1382 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 USP19O94966 1318 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 TTC21BQ7Z4L5 1316 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 TTC21AQ8NDW8 1320 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 FAM83GA6ND36 823 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 GJD4Q96KN9 370 aaPredicted RBP16.28■□□□□ 0.2
GGA3-204ENST00000578208 BTG4Q9NY30 223 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 TERF2IPQ9NYB0 399 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 NRKQ7Z2Y5 1582 aa16.28■□□□□ 0.2
GGA3-204ENST00000578208 KIAA0232Q92628 1395 aa16.27■□□□□ 0.2
GGA3-204ENST00000578208 NLRP6P59044 892 aa16.27■□□□□ 0.2
GGA3-204ENST00000578208 ZC3H6P61129 1189 aaKnown RBP16.27■□□□□ 0.2
GGA3-204ENST00000578208 CDCA8Q53HL2 280 aa16.27■□□□□ 0.2
GGA3-204ENST00000578208 MON2Q7Z3U7 1717 aa16.27■□□□□ 0.19
GGA3-204ENST00000578208 SSH2Q76I76 1423 aa16.27■□□□□ 0.19
GGA3-204ENST00000578208 VPS72Q15906 364 aa16.26■□□□□ 0.19
GGA3-204ENST00000578208 PIK3C2AO00443 1686 aa16.26■□□□□ 0.19
GGA3-204ENST00000578208 NRAPQ86VF7 1730 aa16.25■□□□□ 0.19
GGA3-204ENST00000578208 SLC12A5Q9H2X9 1139 aa16.25■□□□□ 0.19
GGA3-204ENST00000578208 GCP02774 474 aa16.24■□□□□ 0.19
GGA3-204ENST00000578208 CHRNA2Q15822 529 aa16.24■□□□□ 0.19
GGA3-204ENST00000578208 CPDO75976 1380 aa16.24■□□□□ 0.19
GGA3-204ENST00000578208 SLIT3O75094 1523 aa16.24■□□□□ 0.19
GGA3-204ENST00000578208 GLI3P10071 1580 aa16.23■□□□□ 0.19
GGA3-204ENST00000578208 EDC4Q6P2E9 1401 aaKnown RBP16.23■□□□□ 0.19
GGA3-204ENST00000578208 ZBTB7CA1YPR0 619 aa16.23■□□□□ 0.19
GGA3-204ENST00000578208 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.23■□□□□ 0.19
GGA3-204ENST00000578208 A0A1W2PP64 1363 aa16.23■□□□□ 0.19
GGA3-204ENST00000578208 CD163L1Q9NR16 1453 aa16.22■□□□□ 0.19
GGA3-204ENST00000578208 KCNH5Q8NCM2 988 aa16.22■□□□□ 0.19
GGA3-204ENST00000578208 A0A0G2JS52 829 aa16.21■□□□□ 0.19
GGA3-204ENST00000578208 EIF4G2P78344 907 aaKnown RBP eCLIP16.21■□□□□ 0.19
GGA3-204ENST00000578208 MYT1Q01538 1121 aa16.21■□□□□ 0.19
GGA3-204ENST00000578208 EVA1CP58658 441 aa16.2■□□□□ 0.18
GGA3-204ENST00000578208 STRN4Q9NRL3 753 aa16.2■□□□□ 0.18
GGA3-204ENST00000578208 ANKRD36BQ8N2N9 1353 aa16.19■□□□□ 0.18
GGA3-204ENST00000578208 SOX12O15370 315 aa16.18■□□□□ 0.18
GGA3-204ENST00000578208 USP31Q70CQ4 1352 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 NME9Q86XW9 330 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 SEPT12Q8IYM1 358 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 LMO7Q8WWI1 1683 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 SPATA31A5Q5VU36 1347 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 SPATA31A7Q8IWB4 1347 aa16.17■□□□□ 0.18
GGA3-204ENST00000578208 AATKQ6ZMQ8 1374 aa16.16■□□□□ 0.18
GGA3-204ENST00000578208 USP54Q70EL1 1684 aa16.16■□□□□ 0.18
GGA3-204ENST00000578208 HSPA5P11021 654 aaKnown RBP16.16■□□□□ 0.18
GGA3-204ENST00000578208 FAM98CQ17RN3 349 aaKnown RBP16.16■□□□□ 0.18
GGA3-204ENST00000578208 UPF1Q92900 1129 aaKnown RBP eCLIP16.16■□□□□ 0.18
GGA3-204ENST00000578208 CAMTA1Q9Y6Y1 1673 aa16.15■□□□□ 0.18
GGA3-204ENST00000578208 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
GGA3-204ENST00000578208 NFAT5O94916 1531 aa16.14■□□□□ 0.18
GGA3-204ENST00000578208 ZRANB1Q9UGI0 708 aa16.14■□□□□ 0.17
GGA3-204ENST00000578208 COL5A2P05997 1499 aaPredicted RBP16.14■□□□□ 0.17
GGA3-204ENST00000578208 SPATA31A1Q5TZJ5 1347 aa16.14■□□□□ 0.17
GGA3-204ENST00000578208 ONECUT3O60422 494 aaPredicted RBP16.13■□□□□ 0.17
GGA3-204ENST00000578208 ARHGEF25Q86VW2 580 aa16.13■□□□□ 0.17
GGA3-204ENST00000578208 COG3Q96JB2 828 aa16.13■□□□□ 0.17
GGA3-204ENST00000578208 USP35Q9P2H5 1018 aa16.13■□□□□ 0.17
GGA3-204ENST00000578208 OVOS2A0A0J9YW53 1432 aa16.12■□□□□ 0.17
GGA3-204ENST00000578208 OVOS2Q6IE36 1432 aa16.12■□□□□ 0.17
GGA3-204ENST00000578208 LARP1Q6PKG0 1096 aaKnown RBP16.12■□□□□ 0.17
GGA3-204ENST00000578208 ABCC6O95255 1503 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms