RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 CLCN1P35523 988 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 AMER1Q5JTC6 1135 aaPredicted RBP12.49□□□□□ -0.41
PTPRM-205ENST00000577827 AFAP1Q8N556 730 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 NEXNQ0ZGT2 675 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 UBE2Q2Q8WVN8 375 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 MAGI1Q96QZ7 1491 aaPredicted RBP12.49□□□□□ -0.41
PTPRM-205ENST00000577827 NSD3Q9BZ95 1437 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 UQCRHLA0A096LP55 91 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 UQCRHP07919 91 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 TMPOP42166 694 aaKnown RBP12.49□□□□□ -0.41
PTPRM-205ENST00000577827 TMEM57Q8N5G2 664 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 SRCIN1Q9C0H9 1055 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 NAT10Q9H0A0 1025 aaKnown RBP12.48□□□□□ -0.41
PTPRM-205ENST00000577827 CHMP3Q9Y3E7 222 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 CCT4P50991 539 aaKnown RBP12.48□□□□□ -0.41
PTPRM-205ENST00000577827 DHX8Q14562 1220 aaKnown RBP12.48□□□□□ -0.41
PTPRM-205ENST00000577827 C8orf34Q49A92 452 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 PDCL3Q9H2J4 239 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 ATAD2Q6PL18 1390 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 GNAI2P04899 355 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 TPM1P09493 284 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 G3BP1Q13283 466 aaKnown RBP eCLIP12.48□□□□□ -0.41
PTPRM-205ENST00000577827 C1orf115Q9H7X2 142 aa12.48□□□□□ -0.41
PTPRM-205ENST00000577827 DDX58O95786 925 aaKnown RBP12.47□□□□□ -0.41
PTPRM-205ENST00000577827 MCM5P33992 734 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 RBM10P98175 930 aaKnown RBP12.47□□□□□ -0.41
PTPRM-205ENST00000577827 AEBP1Q8IUX7 1158 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 CCDC66A2RUB6 948 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 HOMER1Q86YM7 354 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 CCDC192P0DO97 292 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 TAF7LQ5H9L4 462 aa12.47□□□□□ -0.41
PTPRM-205ENST00000577827 SCAF11Q99590 1463 aaKnown RBP12.47□□□□□ -0.41
PTPRM-205ENST00000577827 HIP1O00291 1037 aa12.46□□□□□ -0.41
PTPRM-205ENST00000577827 CCDC30Q5VVM6 783 aa12.46□□□□□ -0.41
PTPRM-205ENST00000577827 TNPO1Q92973 898 aaKnown RBP12.46□□□□□ -0.41
PTPRM-205ENST00000577827 TRIM5Q9C035 493 aa12.46□□□□□ -0.41
PTPRM-205ENST00000577827 HOOK1Q9UJC3 728 aaKnown RBP12.46□□□□□ -0.41
PTPRM-205ENST00000577827 INSRP06213 1382 aa12.46□□□□□ -0.41
PTPRM-205ENST00000577827 CLASRPQ8N2M8 674 aaKnown RBP12.46□□□□□ -0.42
PTPRM-205ENST00000577827 LTV1Q96GA3 475 aaPredicted RBP12.46□□□□□ -0.42
PTPRM-205ENST00000577827 BMP2KLQ5H9B9 411 aa12.46□□□□□ -0.42
PTPRM-205ENST00000577827 C1orf141Q5JVX7 400 aa12.46□□□□□ -0.42
PTPRM-205ENST00000577827 IGHDP01880 384 aa12.45□□□□□ -0.42
PTPRM-205ENST00000577827 NUP160Q12769 1436 aa12.45□□□□□ -0.42
PTPRM-205ENST00000577827 GAS2L2Q8NHY3 880 aa12.45□□□□□ -0.42
PTPRM-205ENST00000577827 SSH1Q8WYL5 1049 aa12.45□□□□□ -0.42
PTPRM-205ENST00000577827 SNAPC4Q5SXM2 1469 aa12.45□□□□□ -0.42
PTPRM-205ENST00000577827 MNS1Q8NEH6 495 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 LRRCC1Q9C099 1032 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 KIF14Q15058 1648 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 DISP3Q9P2K9 1392 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 TPD52L1Q16890 204 aaPredicted RBP12.44□□□□□ -0.42
PTPRM-205ENST00000577827 EIF2S2P20042 333 aaKnown RBP12.44□□□□□ -0.42
PTPRM-205ENST00000577827 TSR1Q2NL82 804 aaKnown RBP12.44□□□□□ -0.42
PTPRM-205ENST00000577827 FIBPO43427 364 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 HDAC1Q13547 482 aaPredicted RBP12.44□□□□□ -0.42
PTPRM-205ENST00000577827 KLHL40Q2TBA0 621 aa12.44□□□□□ -0.42
PTPRM-205ENST00000577827 LAMC3Q9Y6N6 1575 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 NSD2O96028 1365 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 CPLX1O14810 134 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 CCP110O43303 1012 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 CSB-PGBD3P0DP91 1061 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 ARHGEF11O15085 1522 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 PLEKHH1Q9ULM0 1364 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 SURF6O75683 361 aaKnown RBP12.43□□□□□ -0.42
PTPRM-205ENST00000577827 NFE2L2Q16236 605 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 ARHGEF12Q9NZN5 1544 aa12.43□□□□□ -0.42
PTPRM-205ENST00000577827 KRT85P78386 507 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 ANKRD1Q15327 319 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 CCDC70Q6NSX1 233 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 CCAR2Q8N163 923 aaKnown RBP12.42□□□□□ -0.42
PTPRM-205ENST00000577827 IL16Q14005 1332 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 A0A0U1RQG5 324 aaPredicted RBP12.42□□□□□ -0.42
PTPRM-205ENST00000577827 TRIM29Q14134 588 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 ERC1Q8IUD2 1116 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 PDCL2Q8N4E4 241 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 XRCC6P12956 609 aaKnown RBP eCLIP12.42□□□□□ -0.42
PTPRM-205ENST00000577827 ZSCAN31Q96LW9 406 aaPredicted RBP12.42□□□□□ -0.42
PTPRM-205ENST00000577827 SLC52A1Q9NWF4 448 aa12.42□□□□□ -0.42
PTPRM-205ENST00000577827 NUTM2FA1L443 756 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 TRIM27P14373 513 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 SNX21Q969T3 373 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 KINO60870 393 aaKnown RBP12.41□□□□□ -0.42
PTPRM-205ENST00000577827 SYNE3Q6ZMZ3 975 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 ACBD3Q9H3P7 528 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 CYP46A1Q9Y6A2 500 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 SLC4A2P04920 1241 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 CCDC27Q2M243 656 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 CCDC112Q8NEF3 446 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 SDF4Q9BRK5 362 aa12.41□□□□□ -0.42
PTPRM-205ENST00000577827 PRAM1Q96QH2 718 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 ASXL1Q8IXJ9 1541 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 SYCE3A1L190 88 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 ANKRD20A12PQ8NF67 263 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 NECTIN2Q92692 538 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 PRAG1Q86YV5 1406 aa12.4□□□□□ -0.42
PTPRM-205ENST00000577827 GPATCH8Q9UKJ3 1502 aaKnown RBP12.4□□□□□ -0.42
PTPRM-205ENST00000577827 SSFA2P28290 1259 aa12.39□□□□□ -0.43
PTPRM-205ENST00000577827 ZNF692Q9BU19 519 aaPredicted RBP12.39□□□□□ -0.43
PTPRM-205ENST00000577827 RASSF8Q8NHQ8 419 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms