RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TTC24A2A3L6 582 aaPredicted RBP7.25□□□□□ -1.25
NUP88-209ENST00000574855 SKOR1P84550 965 aa7.25□□□□□ -1.25
NUP88-209ENST00000574855 PPP2R2DQ66LE6 453 aa7.25□□□□□ -1.25
NUP88-209ENST00000574855 SNIP1Q8TAD8 396 aaKnown RBP7.25□□□□□ -1.25
NUP88-209ENST00000574855 BAP1Q92560 729 aa7.25□□□□□ -1.25
NUP88-209ENST00000574855 TOR4AQ9NXH8 423 aa7.25□□□□□ -1.25
NUP88-209ENST00000574855 FAM187AA6NFU0 413 aa7.24□□□□□ -1.25
NUP88-209ENST00000574855 F12P00748 615 aaPredicted RBP7.24□□□□□ -1.25
NUP88-209ENST00000574855 SH3BP2P78314 561 aa7.24□□□□□ -1.25
NUP88-209ENST00000574855 CTDSPL2Q05D32 466 aa7.24□□□□□ -1.25
NUP88-209ENST00000574855 EHBP1Q8NDI1 1231 aa7.24□□□□□ -1.25
NUP88-209ENST00000574855 MAP10Q9P2G4 905 aa7.24□□□□□ -1.25
NUP88-209ENST00000574855 ARMC2Q8NEN0 867 aa7.23□□□□□ -1.25
NUP88-209ENST00000574855 LINC01559Q495D7 138 aa7.22□□□□□ -1.25
NUP88-209ENST00000574855 ZNF511Q8NB15 262 aa7.22□□□□□ -1.25
NUP88-209ENST00000574855 FBXO31Q5XUX0 539 aaPredicted RBP7.21□□□□□ -1.26
NUP88-209ENST00000574855 AP1G2O75843 785 aa7.2□□□□□ -1.26
NUP88-209ENST00000574855 VARSP26640 1264 aaKnown RBP7.2□□□□□ -1.26
NUP88-209ENST00000574855 RFC5P40937 340 aa7.2□□□□□ -1.26
NUP88-209ENST00000574855 MYT1Q01538 1121 aa7.2□□□□□ -1.26
NUP88-209ENST00000574855 LCE2BO14633 110 aa7.19□□□□□ -1.26
NUP88-209ENST00000574855 TMEM259Q4ZIN3 620 aa7.19□□□□□ -1.26
NUP88-209ENST00000574855 LRRN4Q8WUT4 740 aa7.19□□□□□ -1.26
NUP88-209ENST00000574855 J3QL48 77 aa7.18□□□□□ -1.26
NUP88-209ENST00000574855 SIAH2O43255 324 aa7.18□□□□□ -1.26
NUP88-209ENST00000574855 ALDH1A1P00352 501 aa7.18□□□□□ -1.26
NUP88-209ENST00000574855 SMPD1P17405 629 aa7.18□□□□□ -1.26
NUP88-209ENST00000574855 AGERQ15109 404 aa7.18□□□□□ -1.26
NUP88-209ENST00000574855 BPHLQ86WA6 291 aaPredicted RBP7.18□□□□□ -1.26
NUP88-209ENST00000574855 AVPP01185 164 aa7.17□□□□□ -1.26
NUP88-209ENST00000574855 NBPF14Q5TI25 921 aa7.17□□□□□ -1.26
NUP88-209ENST00000574855 FAM174AQ8TBP5 190 aa7.17□□□□□ -1.26
NUP88-209ENST00000574855 GPKOWQ92917 476 aaPredicted RBP eCLIP7.17□□□□□ -1.26
NUP88-209ENST00000574855 CTC1Q2NKJ3 1217 aa7.16□□□□□ -1.26
NUP88-209ENST00000574855 FOXJ1Q92949 421 aa7.16□□□□□ -1.26
NUP88-209ENST00000574855 WASF2Q9Y6W5 498 aa7.16□□□□□ -1.26
NUP88-209ENST00000574855 AXIN1O15169 862 aa7.15□□□□□ -1.26
NUP88-209ENST00000574855 USP17L8P0C7I0 530 aa7.15□□□□□ -1.26
NUP88-209ENST00000574855 NR6A1Q15406 480 aa7.15□□□□□ -1.26
NUP88-209ENST00000574855 CRIPAKQ8N1N5 446 aa7.15□□□□□ -1.26
NUP88-209ENST00000574855 MPNDQ8N594 471 aa7.15□□□□□ -1.26
NUP88-209ENST00000574855 PNMA1Q8ND90 353 aa7.14□□□□□ -1.27
NUP88-209ENST00000574855 HPS1Q92902 700 aa7.14□□□□□ -1.27
NUP88-209ENST00000574855 AAASQ9NRG9 546 aa7.14□□□□□ -1.27
NUP88-209ENST00000574855 FKBPLQ9UIM3 349 aa7.14□□□□□ -1.27
NUP88-209ENST00000574855 ST8SIA5O15466 376 aa7.13□□□□□ -1.27
NUP88-209ENST00000574855 SMCPP49901 116 aaPredicted RBP7.13□□□□□ -1.27
NUP88-209ENST00000574855 PDXDC2PQ6P474 469 aa7.13□□□□□ -1.27
NUP88-209ENST00000574855 ZC3H4Q9UPT8 1303 aaKnown RBP7.12□□□□□ -1.27
NUP88-209ENST00000574855 ARID5BQ14865 1188 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 C4orf48Q5BLP8 95 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 ZNF787Q6DD87 383 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 SH3BP5LQ7L8J4 393 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 SH3RF1Q7Z6J0 888 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 TLL2Q9Y6L7 1015 aa7.12□□□□□ -1.27
NUP88-209ENST00000574855 MAGEB6P1A0A0J9YX57 407 aa7.11□□□□□ -1.27
NUP88-209ENST00000574855 CDK15Q96Q40 435 aa7.11□□□□□ -1.27
NUP88-209ENST00000574855 ARHGAP9Q9BRR9 750 aa7.11□□□□□ -1.27
NUP88-209ENST00000574855 HMX1Q9NP08 348 aaPredicted RBP7.11□□□□□ -1.27
NUP88-209ENST00000574855 ADH1CP00326 375 aa7.1□□□□□ -1.27
NUP88-209ENST00000574855 PTK2Q05397 1052 aa7.1□□□□□ -1.27
NUP88-209ENST00000574855 BANK1Q8NDB2 785 aa7.1□□□□□ -1.27
NUP88-209ENST00000574855 EPS8L1Q8TE68 723 aa7.1□□□□□ -1.27
NUP88-209ENST00000574855 ZBTB33Q86T24 672 aa7.09□□□□□ -1.27
NUP88-209ENST00000574855 CARD14Q9BXL6 1004 aa7.09□□□□□ -1.27
NUP88-209ENST00000574855 GPSM3Q9Y4H4 160 aa7.09□□□□□ -1.27
NUP88-209ENST00000574855 NR5A1Q13285 461 aa7.08□□□□□ -1.28
NUP88-209ENST00000574855 NNTQ13423 1086 aa7.08□□□□□ -1.28
NUP88-209ENST00000574855 TRMT44Q8IYL2 757 aaKnown RBP7.08□□□□□ -1.28
NUP88-209ENST00000574855 C1QTNF2Q9BXJ5 285 aa7.08□□□□□ -1.28
NUP88-209ENST00000574855 DACH1Q9UI36 760 aa7.08□□□□□ -1.28
NUP88-209ENST00000574855 CAPN5O15484 640 aaPredicted RBP7.07□□□□□ -1.28
NUP88-209ENST00000574855 GRM5P41594 1212 aa7.07□□□□□ -1.28
NUP88-209ENST00000574855 APBB1O00213 710 aa7.06□□□□□ -1.28
NUP88-209ENST00000574855 ERFEQ4G0M1 354 aa7.06□□□□□ -1.28
NUP88-209ENST00000574855 VASH1Q7L8A9 365 aaPredicted RBP7.06□□□□□ -1.28
NUP88-209ENST00000574855 TRIM34Q9BYJ4 488 aa7.06□□□□□ -1.28
NUP88-209ENST00000574855 CDV3Q9UKY7 258 aaKnown RBP7.06□□□□□ -1.28
NUP88-209ENST00000574855 MAP4K5Q9Y4K4 846 aa7.06□□□□□ -1.28
NUP88-209ENST00000574855 POTECB2RU33 542 aa7.05□□□□□ -1.28
NUP88-209ENST00000574855 SOCS7O14512 581 aa7.05□□□□□ -1.28
NUP88-209ENST00000574855 SLC10A4Q96EP9 437 aa7.05□□□□□ -1.28
NUP88-209ENST00000574855 GJD4Q96KN9 370 aaPredicted RBP7.05□□□□□ -1.28
NUP88-209ENST00000574855 ATP13A2Q9NQ11 1180 aa7.05□□□□□ -1.28
NUP88-209ENST00000574855 WDR4P57081 412 aaKnown RBP7.04□□□□□ -1.28
NUP88-209ENST00000574855 ADAM32Q8TC27 787 aa7.04□□□□□ -1.28
NUP88-209ENST00000574855 SENP2Q9HC62 589 aa7.04□□□□□ -1.28
NUP88-209ENST00000574855 GMPR2Q9P2T1 348 aaKnown RBP7.04□□□□□ -1.28
NUP88-209ENST00000574855 C11orf95C9JLR9 678 aaPredicted RBP7.03□□□□□ -1.28
NUP88-209ENST00000574855 NR3C2P08235 984 aa7.03□□□□□ -1.28
NUP88-209ENST00000574855 FSHRP23945 695 aa7.03□□□□□ -1.28
NUP88-209ENST00000574855 OCSTAMPQ9BR26 566 aa7.03□□□□□ -1.28
NUP88-209ENST00000574855 KLF16Q9BXK1 252 aaPredicted RBP7.03□□□□□ -1.28
NUP88-209ENST00000574855 SNRKQ9NRH2 765 aa7.03□□□□□ -1.28
NUP88-209ENST00000574855 ZIC2O95409 532 aaPredicted RBP7.02□□□□□ -1.29
NUP88-209ENST00000574855 MTMR14Q8NCE2 650 aa7.02□□□□□ -1.29
NUP88-209ENST00000574855 KCTD15Q96SI1 283 aaPredicted RBP7.02□□□□□ -1.29
NUP88-209ENST00000574855 PRM3Q9NNZ6 103 aa7.02□□□□□ -1.29
NUP88-209ENST00000574855 NDUFB9Q9Y6M9 179 aa7.02□□□□□ -1.29
NUP88-209ENST00000574855 ZBBXA8MT70 800 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms