RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 KIF20BQ96Q89 1820 aa13.67□□□□□ -0.22
USP43-205ENST00000574408 CPSF1Q10570 1443 aaKnown RBP13.67□□□□□ -0.22
USP43-205ENST00000574408 FBLN1P23142 703 aa13.67□□□□□ -0.22
USP43-205ENST00000574408 THEMISQ8N1K5 641 aaPredicted RBP13.67□□□□□ -0.22
USP43-205ENST00000574408 PPM1GO15355 546 aaPredicted RBP13.66□□□□□ -0.22
USP43-205ENST00000574408 PRR36Q9H6K5 1346 aa13.66□□□□□ -0.22
USP43-205ENST00000574408 NME9Q86XW9 330 aa13.66□□□□□ -0.22
USP43-205ENST00000574408 COL3A1P02461 1466 aaPredicted RBP13.66□□□□□ -0.22
USP43-205ENST00000574408 EDC4Q6P2E9 1401 aaKnown RBP13.66□□□□□ -0.22
USP43-205ENST00000574408 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.65□□□□□ -0.22
USP43-205ENST00000574408 NUTM2FA1L443 756 aa13.65□□□□□ -0.22
USP43-205ENST00000574408 DIAPH1O60610 1272 aaKnown RBP13.65□□□□□ -0.22
USP43-205ENST00000574408 ARHGAP23Q9P227 1491 aa13.65□□□□□ -0.22
USP43-205ENST00000574408 SLIT1O75093 1534 aa13.65□□□□□ -0.22
USP43-205ENST00000574408 PHF23Q9BUL5 403 aaPredicted RBP13.64□□□□□ -0.23
USP43-205ENST00000574408 PTPRUQ92729 1446 aa13.64□□□□□ -0.23
USP43-205ENST00000574408 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
USP43-205ENST00000574408 AMOTL2Q9Y2J4 779 aa13.64□□□□□ -0.23
USP43-205ENST00000574408 CDC42BPGQ6DT37 1551 aa13.63□□□□□ -0.23
USP43-205ENST00000574408 POLKQ9UBT6 870 aa13.63□□□□□ -0.23
USP43-205ENST00000574408 MAPK8IP3Q9UPT6 1336 aa13.63□□□□□ -0.23
USP43-205ENST00000574408 WDR63Q8IWG1 891 aa13.63□□□□□ -0.23
USP43-205ENST00000574408 TBX22Q9Y458 520 aa13.63□□□□□ -0.23
USP43-205ENST00000574408 BCAR3O75815 825 aa13.62□□□□□ -0.23
USP43-205ENST00000574408 CCDC27Q2M243 656 aa13.62□□□□□ -0.23
USP43-205ENST00000574408 PNPLA6Q8IY17 1366 aa13.62□□□□□ -0.23
USP43-205ENST00000574408 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.61□□□□□ -0.23
USP43-205ENST00000574408 COG3Q96JB2 828 aa13.61□□□□□ -0.23
USP43-205ENST00000574408 PLEKHF1Q96S99 279 aa13.61□□□□□ -0.23
USP43-205ENST00000574408 EMILIN1Q9Y6C2 1016 aa13.61□□□□□ -0.23
USP43-205ENST00000574408 ZNF692Q9BU19 519 aaPredicted RBP13.61□□□□□ -0.23
USP43-205ENST00000574408 RTN4Q9NQC3 1192 aaKnown RBP13.61□□□□□ -0.23
USP43-205ENST00000574408 ADGRB2O60241 1585 aa13.6□□□□□ -0.23
USP43-205ENST00000574408 TMPOP42166 694 aaKnown RBP13.6□□□□□ -0.23
USP43-205ENST00000574408 NPM2Q86SE8 214 aaKnown RBP13.6□□□□□ -0.23
USP43-205ENST00000574408 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
USP43-205ENST00000574408 ACEP12821 1306 aa13.59□□□□□ -0.23
USP43-205ENST00000574408 MON2Q7Z3U7 1717 aa13.58□□□□□ -0.24
USP43-205ENST00000574408 MYH16Q9H6N6 1097 aa13.58□□□□□ -0.24
USP43-205ENST00000574408 RRS1Q15050 365 aaKnown RBP13.58□□□□□ -0.24
USP43-205ENST00000574408 PNNQ9H307 717 aaKnown RBP13.58□□□□□ -0.24
USP43-205ENST00000574408 ITSN1Q15811 1721 aa13.58□□□□□ -0.24
USP43-205ENST00000574408 RIMS1Q86UR5 1692 aaKnown RBP13.57□□□□□ -0.24
USP43-205ENST00000574408 CANXP27824 592 aaKnown RBP13.57□□□□□ -0.24
USP43-205ENST00000574408 MAP2P11137 1827 aaKnown RBP13.57□□□□□ -0.24
USP43-205ENST00000574408 CEP170BQ9Y4F5 1589 aaPredicted RBP13.57□□□□□ -0.24
USP43-205ENST00000574408 PTCH1Q13635 1447 aa13.57□□□□□ -0.24
USP43-205ENST00000574408 TTC21BQ7Z4L5 1316 aa13.57□□□□□ -0.24
USP43-205ENST00000574408 PLEKHG3A1L390 1219 aa13.57□□□□□ -0.24
USP43-205ENST00000574408 FCHSD2O94868 740 aa13.57□□□□□ -0.24
USP43-205ENST00000574408 AKAP12Q02952 1782 aa13.57□□□□□ -0.24
USP43-205ENST00000574408 PRKAR2BP31323 418 aa13.56□□□□□ -0.24
USP43-205ENST00000574408 RIPK4P57078 832 aa13.56□□□□□ -0.24
USP43-205ENST00000574408 TRIM35Q9UPQ4 493 aa13.56□□□□□ -0.24
USP43-205ENST00000574408 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
USP43-205ENST00000574408 HMOX1P09601 288 aa13.56□□□□□ -0.24
USP43-205ENST00000574408 NEFMP07197 916 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 DIP2AQ14689 1571 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 RARSP54136 660 aaKnown RBP13.55□□□□□ -0.24
USP43-205ENST00000574408 PMFBP1Q8TBY8 1022 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 RSPH6AQ9H0K4 717 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 KCNA6P17658 529 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 FRAT1Q92837 279 aaPredicted RBP13.55□□□□□ -0.24
USP43-205ENST00000574408 TSR2Q969E8 191 aaKnown RBP13.55□□□□□ -0.24
USP43-205ENST00000574408 LRRC7Q96NW7 1537 aa13.55□□□□□ -0.24
USP43-205ENST00000574408 CDK12Q9NYV4 1490 aaPredicted RBP13.54□□□□□ -0.24
USP43-205ENST00000574408 BCL2L13Q9BXK5 485 aa13.54□□□□□ -0.24
USP43-205ENST00000574408 FANCIQ9NVI1 1328 aa13.54□□□□□ -0.24
USP43-205ENST00000574408 USP6P35125 1406 aa13.54□□□□□ -0.24
USP43-205ENST00000574408 IL13P35225 146 aa13.54□□□□□ -0.24
USP43-205ENST00000574408 TOPAZ1Q8N9V7 1692 aa13.53□□□□□ -0.24
USP43-205ENST00000574408 ANKLE2Q86XL3 938 aa13.52□□□□□ -0.24
USP43-205ENST00000574408 NGDNQ8NEJ9 315 aaKnown RBP13.52□□□□□ -0.24
USP43-205ENST00000574408 PDE3AQ14432 1141 aa13.52□□□□□ -0.25
USP43-205ENST00000574408 PANK1Q8TE04 598 aa13.52□□□□□ -0.25
USP43-205ENST00000574408 SOX12O15370 315 aa13.51□□□□□ -0.25
USP43-205ENST00000574408 PHACTR3Q96KR7 559 aa13.51□□□□□ -0.25
USP43-205ENST00000574408 XRN1Q8IZH2 1706 aaKnown RBP13.51□□□□□ -0.25
USP43-205ENST00000574408 EXOSC9Q06265 439 aaKnown RBP13.51□□□□□ -0.25
USP43-205ENST00000574408 TCERG1O14776 1098 aaKnown RBP13.5□□□□□ -0.25
USP43-205ENST00000574408 MSH5O43196 834 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 SKAP1Q86WV1 359 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 COG6Q9Y2V7 657 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 IL16Q14005 1332 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 NRKQ7Z2Y5 1582 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 PIK3R4Q99570 1358 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 OVOS2A0A0J9YW53 1432 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 OVOS2Q6IE36 1432 aa13.5□□□□□ -0.25
USP43-205ENST00000574408 NFE2L2Q16236 605 aa13.49□□□□□ -0.25
USP43-205ENST00000574408 KDM2BQ8NHM5 1336 aa13.49□□□□□ -0.25
USP43-205ENST00000574408 RTL5Q5HYW3 569 aaPredicted RBP13.49□□□□□ -0.25
USP43-205ENST00000574408 CENPQQ7L2Z9 268 aaPredicted RBP13.49□□□□□ -0.25
USP43-205ENST00000574408 CT47B1P0C2W7 299 aaPredicted RBP13.48□□□□□ -0.25
USP43-205ENST00000574408 TNNQ9UQP3 1299 aa13.48□□□□□ -0.25
USP43-205ENST00000574408 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
USP43-205ENST00000574408 TTC21AQ8NDW8 1320 aa13.48□□□□□ -0.25
USP43-205ENST00000574408 ADAMTSL3P82987 1691 aa13.47□□□□□ -0.25
USP43-205ENST00000574408 DEKP35659 375 aaKnown RBP13.47□□□□□ -0.25
USP43-205ENST00000574408 LAS1LQ9Y4W2 734 aaKnown RBP13.47□□□□□ -0.25
USP43-205ENST00000574408 EIF4A2Q14240 407 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms