RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 PRR36Q9H6K5 1346 aa15.56■□□□□ 0.08
CIITA-209ENST00000573309 SLC24A1O60721 1099 aa15.56■□□□□ 0.08
CIITA-209ENST00000573309 CFAP53Q96M91 514 aa15.56■□□□□ 0.08
CIITA-209ENST00000573309 KDM5AP29375 1690 aaKnown RBP15.55■□□□□ 0.08
CIITA-209ENST00000573309 QRICH2Q9H0J4 1663 aa15.55■□□□□ 0.08
CIITA-209ENST00000573309 THUMPD2Q9BTF0 503 aaKnown RBP15.54■□□□□ 0.08
CIITA-209ENST00000573309 AGLP35573 1532 aa15.54■□□□□ 0.08
CIITA-209ENST00000573309 LTV1Q96GA3 475 aaPredicted RBP15.54■□□□□ 0.08
CIITA-209ENST00000573309 RGS3P49796 1198 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 GOLGA2Q08379 1002 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 CENPQQ7L2Z9 268 aaPredicted RBP15.53■□□□□ 0.08
CIITA-209ENST00000573309 IFT172Q9UG01 1749 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 BCAR3O75815 825 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 CCDC61Q9Y6R9 512 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 LAMC1P11047 1609 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 ANKRD36BQ8N2N9 1353 aa15.53■□□□□ 0.08
CIITA-209ENST00000573309 RRAGDQ9NQL2 400 aaPredicted RBP15.52■□□□□ 0.08
CIITA-209ENST00000573309 TSR2Q969E8 191 aaKnown RBP15.52■□□□□ 0.07
CIITA-209ENST00000573309 BLMP54132 1417 aaPredicted RBP15.51■□□□□ 0.07
CIITA-209ENST00000573309 PPIP5K1Q6PFW1 1433 aa15.51■□□□□ 0.07
CIITA-209ENST00000573309 ACEP12821 1306 aa15.51■□□□□ 0.07
CIITA-209ENST00000573309 ELL2O00472 640 aaPredicted RBP15.51■□□□□ 0.07
CIITA-209ENST00000573309 CLUAP1Q96AJ1 413 aa15.5■□□□□ 0.07
CIITA-209ENST00000573309 SBNO2Q9Y2G9 1366 aa15.5■□□□□ 0.07
CIITA-209ENST00000573309 ZFYVE9O95405 1425 aa15.49■□□□□ 0.07
CIITA-209ENST00000573309 MYOM1P52179 1685 aa15.49■□□□□ 0.07
CIITA-209ENST00000573309 ATAD2Q6PL18 1390 aa15.49■□□□□ 0.07
CIITA-209ENST00000573309 CANXP27824 592 aaKnown RBP15.49■□□□□ 0.07
CIITA-209ENST00000573309 SPATA31D1Q6ZQQ2 1576 aa15.49■□□□□ 0.07
CIITA-209ENST00000573309 ZC3H13Q5T200 1668 aaKnown RBP15.49■□□□□ 0.07
CIITA-209ENST00000573309 COG3Q96JB2 828 aa15.49■□□□□ 0.07
CIITA-209ENST00000573309 ANKLE2Q86XL3 938 aa15.48■□□□□ 0.07
CIITA-209ENST00000573309 POLKQ9UBT6 870 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 DIAPH1O60610 1272 aaKnown RBP15.47■□□□□ 0.07
CIITA-209ENST00000573309 DUSP27Q5VZP5 1158 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 WWC1Q8IX03 1113 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 DDX17Q92841 729 aaKnown RBP15.47■□□□□ 0.07
CIITA-209ENST00000573309 ABCC11Q96J66 1382 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 DCTN1Q14203 1278 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 TNNQ9UQP3 1299 aa15.47■□□□□ 0.07
CIITA-209ENST00000573309 USP19O94966 1318 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 PRKAR2BP31323 418 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 SETBP1Q9Y6X0 1596 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 PTPRUQ92729 1446 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 MAPK8IP3Q9UPT6 1336 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 ESCO1Q5FWF5 840 aa15.46■□□□□ 0.07
CIITA-209ENST00000573309 ARHGEF28Q8N1W1 1705 aaKnown RBP15.46■□□□□ 0.06
CIITA-209ENST00000573309 ADAMTS13Q76LX8 1427 aa15.45■□□□□ 0.06
CIITA-209ENST00000573309 RUNDC1Q96C34 613 aa15.45■□□□□ 0.06
CIITA-209ENST00000573309 AEBP1Q8IUX7 1158 aa15.45■□□□□ 0.06
CIITA-209ENST00000573309 PHACTR3Q96KR7 559 aa15.45■□□□□ 0.06
CIITA-209ENST00000573309 KIAA1210Q9ULL0 1709 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 RIPK4P57078 832 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 NLRP6P59044 892 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 HSP90AB2PQ58FF8 381 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 FOXO3O43524 673 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 SEC24BO95487 1268 aa15.44■□□□□ 0.06
CIITA-209ENST00000573309 FAM83GA6ND36 823 aa15.43■□□□□ 0.06
CIITA-209ENST00000573309 SLFN5Q08AF3 891 aa15.42■□□□□ 0.06
CIITA-209ENST00000573309 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.42■□□□□ 0.06
CIITA-209ENST00000573309 SLKQ9H2G2 1235 aaPredicted RBP15.42■□□□□ 0.06
CIITA-209ENST00000573309 ORAI2Q96SN7 254 aa15.42■□□□□ 0.06
CIITA-209ENST00000573309 PANK1Q8TE04 598 aa15.41■□□□□ 0.06
CIITA-209ENST00000573309 ARXQ96QS3 562 aa15.41■□□□□ 0.06
CIITA-209ENST00000573309 INSRP06213 1382 aa15.41■□□□□ 0.06
CIITA-209ENST00000573309 CD163L1Q9NR16 1453 aa15.4■□□□□ 0.06
CIITA-209ENST00000573309 ABTB2Q8N961 1025 aa15.4■□□□□ 0.06
CIITA-209ENST00000573309 USHBP1Q8N6Y0 703 aa15.4■□□□□ 0.06
CIITA-209ENST00000573309 TBX22Q9Y458 520 aa15.4■□□□□ 0.06
CIITA-209ENST00000573309 NEURL4Q96JN8 1562 aa15.4■□□□□ 0.06
CIITA-209ENST00000573309 IGHDP01880 384 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 PROSER2Q86WR7 435 aaPredicted RBP15.39■□□□□ 0.05
CIITA-209ENST00000573309 PKNOX2Q96KN3 472 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 TTC21BQ7Z4L5 1316 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 SULT6B1Q6IMI4 303 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 COG6Q9Y2V7 657 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 REREQ9P2R6 1566 aa15.39■□□□□ 0.05
CIITA-209ENST00000573309 PLEKHG1Q9ULL1 1385 aa15.38■□□□□ 0.05
CIITA-209ENST00000573309 AMPHP49418 695 aa15.38■□□□□ 0.05
CIITA-209ENST00000573309 TMPOP42166 694 aaKnown RBP15.38■□□□□ 0.05
CIITA-209ENST00000573309 MIS18AQ9NYP9 233 aa15.38■□□□□ 0.05
CIITA-209ENST00000573309 NPC1L1Q9UHC9 1359 aa15.37■□□□□ 0.05
CIITA-209ENST00000573309 ZNF521Q96K83 1311 aa15.37■□□□□ 0.05
CIITA-209ENST00000573309 POLR3AO14802 1390 aaPredicted RBP15.37■□□□□ 0.05
CIITA-209ENST00000573309 PSME1Q06323 249 aa15.37■□□□□ 0.05
CIITA-209ENST00000573309 EXOSC9Q06265 439 aaKnown RBP15.36■□□□□ 0.05
CIITA-209ENST00000573309 RIMS1Q86UR5 1692 aaKnown RBP15.36■□□□□ 0.05
CIITA-209ENST00000573309 C3P01024 1663 aa15.35■□□□□ 0.05
CIITA-209ENST00000573309 E9PSI1 815 aa15.35■□□□□ 0.05
CIITA-209ENST00000573309 XRCC6P12956 609 aaKnown RBP eCLIP15.35■□□□□ 0.05
CIITA-209ENST00000573309 ANTXR1Q9H6X2 564 aa15.35■□□□□ 0.05
CIITA-209ENST00000573309 CPS1P31327 1500 aa15.35■□□□□ 0.05
CIITA-209ENST00000573309 L1TD1Q5T7N2 865 aaKnown RBP15.34■□□□□ 0.05
CIITA-209ENST00000573309 NRXN3Q9Y4C0 1643 aa15.34■□□□□ 0.05
CIITA-209ENST00000573309 PANK2Q9BZ23 570 aa15.34■□□□□ 0.05
CIITA-209ENST00000573309 FER1L4A9Z1Z3 1794 aa15.34■□□□□ 0.05
CIITA-209ENST00000573309 MCM10Q7L590 875 aa15.33■□□□□ 0.05
CIITA-209ENST00000573309 KRT24Q2M2I5 525 aa15.33■□□□□ 0.04
CIITA-209ENST00000573309 NLRP1Q9C000 1473 aa15.33■□□□□ 0.04
CIITA-209ENST00000573309 MYO3AQ8NEV4 1616 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms