RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 TNS3Q68CZ2 1445 aa22.28■■□□□ 1.16
CHD3-215ENST00000572750 ALS2Q96Q42 1657 aa22.27■■□□□ 1.16
CHD3-215ENST00000572750 KRT28Q7Z3Y7 464 aa22.27■■□□□ 1.16
CHD3-215ENST00000572750 POLR3AO14802 1390 aaPredicted RBP22.26■■□□□ 1.15
CHD3-215ENST00000572750 ABCA3Q99758 1704 aa22.26■■□□□ 1.15
CHD3-215ENST00000572750 NGDNQ8NEJ9 315 aaKnown RBP22.26■■□□□ 1.15
CHD3-215ENST00000572750 AKAP12Q02952 1782 aa22.25■■□□□ 1.15
CHD3-215ENST00000572750 PSME1Q06323 249 aa22.25■■□□□ 1.15
CHD3-215ENST00000572750 BCL9LQ86UU0 1499 aa22.25■■□□□ 1.15
CHD3-215ENST00000572750 ACEP12821 1306 aa22.24■■□□□ 1.15
CHD3-215ENST00000572750 SBNO1A3KN83 1393 aa22.24■■□□□ 1.15
CHD3-215ENST00000572750 DEFB132Q7Z7B7 95 aa22.23■■□□□ 1.15
CHD3-215ENST00000572750 SPATA31A3Q5VYP0 1347 aa22.23■■□□□ 1.15
CHD3-215ENST00000572750 NRKQ7Z2Y5 1582 aa22.21■■□□□ 1.15
CHD3-215ENST00000572750 PLEKHG3A1L390 1219 aa22.21■■□□□ 1.15
CHD3-215ENST00000572750 CABP1Q9NZU7 370 aa22.21■■□□□ 1.15
CHD3-215ENST00000572750 MON2Q7Z3U7 1717 aa22.2■■□□□ 1.14
CHD3-215ENST00000572750 CRYBG1Q9Y4K1 1723 aa22.2■■□□□ 1.14
CHD3-215ENST00000572750 BLMP54132 1417 aaPredicted RBP22.19■■□□□ 1.14
CHD3-215ENST00000572750 MARF1Q9Y4F3 1742 aaKnown RBP22.19■■□□□ 1.14
CHD3-215ENST00000572750 MYOM1P52179 1685 aa22.18■■□□□ 1.14
CHD3-215ENST00000572750 LMOD2Q6P5Q4 547 aa22.18■■□□□ 1.14
CHD3-215ENST00000572750 USP6P35125 1406 aa22.17■■□□□ 1.14
CHD3-215ENST00000572750 ARHGEF10O15013 1369 aa22.17■■□□□ 1.14
CHD3-215ENST00000572750 CD163L1Q9NR16 1453 aa22.16■■□□□ 1.14
CHD3-215ENST00000572750 PAK3O75914 559 aaPredicted RBP22.16■■□□□ 1.14
CHD3-215ENST00000572750 HSPA5P11021 654 aaKnown RBP22.16■■□□□ 1.14
CHD3-215ENST00000572750 EIF4G2P78344 907 aaKnown RBP eCLIP22.16■■□□□ 1.14
CHD3-215ENST00000572750 TMF1P82094 1093 aa22.16■■□□□ 1.14
CHD3-215ENST00000572750 PHRF1Q9P1Y6 1649 aaKnown RBP22.16■■□□□ 1.14
CHD3-215ENST00000572750 PIK3C2AO00443 1686 aa22.15■■□□□ 1.14
CHD3-215ENST00000572750 PLEKHG5O94827 1062 aa22.15■■□□□ 1.14
CHD3-215ENST00000572750 BRWD3Q6RI45 1802 aa22.15■■□□□ 1.14
CHD3-215ENST00000572750 GLI3P10071 1580 aa22.14■■□□□ 1.13
CHD3-215ENST00000572750 GJD4Q96KN9 370 aaPredicted RBP22.14■■□□□ 1.13
CHD3-215ENST00000572750 CPSF1Q10570 1443 aaKnown RBP22.14■■□□□ 1.13
CHD3-215ENST00000572750 TMC1Q8TDI8 760 aa22.13■■□□□ 1.13
CHD3-215ENST00000572750 SLC24A1O60721 1099 aa22.12■■□□□ 1.13
CHD3-215ENST00000572750 PSDA5PKW4 1024 aaPredicted RBP22.11■■□□□ 1.13
CHD3-215ENST00000572750 CABLES1Q8TDN4 633 aa22.11■■□□□ 1.13
CHD3-215ENST00000572750 SSH2Q76I76 1423 aa22.11■■□□□ 1.13
CHD3-215ENST00000572750 PUS7Q96PZ0 661 aaKnown RBP22.1■■□□□ 1.13
CHD3-215ENST00000572750 A0A1W2PP64 1363 aa22.1■■□□□ 1.13
CHD3-215ENST00000572750 KTN1Q86UP2 1357 aaKnown RBP22.1■■□□□ 1.13
CHD3-215ENST00000572750 NINLQ9Y2I6 1382 aa22.1■■□□□ 1.13
CHD3-215ENST00000572750 SLC12A5Q9H2X9 1139 aa22.09■■□□□ 1.13
CHD3-215ENST00000572750 NUTM2GQ5VZR2 741 aa22.08■■□□□ 1.13
CHD3-215ENST00000572750 BRD4O60885 1362 aaPredicted RBP22.08■■□□□ 1.12
CHD3-215ENST00000572750 PLCH1Q4KWH8 1693 aa22.07■■□□□ 1.12
CHD3-215ENST00000572750 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.06■■□□□ 1.12
CHD3-215ENST00000572750 HAP1P54257 671 aaPredicted RBP22.06■■□□□ 1.12
CHD3-215ENST00000572750 CDCA8Q53HL2 280 aa22.05■■□□□ 1.12
CHD3-215ENST00000572750 ABTB2Q8N961 1025 aa22.05■■□□□ 1.12
CHD3-215ENST00000572750 HDGFL2Q7Z4V5 671 aaPredicted RBP22.04■■□□□ 1.12
CHD3-215ENST00000572750 ANKRD36BQ8N2N9 1353 aa22.03■■□□□ 1.12
CHD3-215ENST00000572750 ZNF692Q9BU19 519 aaPredicted RBP22.03■■□□□ 1.12
CHD3-215ENST00000572750 TERF2IPQ9NYB0 399 aa22.03■■□□□ 1.12
CHD3-215ENST00000572750 USP54Q70EL1 1684 aa22.03■■□□□ 1.12
CHD3-215ENST00000572750 EDC4Q6P2E9 1401 aaKnown RBP22.03■■□□□ 1.12
CHD3-215ENST00000572750 TTC21BQ7Z4L5 1316 aa22.03■■□□□ 1.12
CHD3-215ENST00000572750 SLIT2O94813 1529 aa22.02■■□□□ 1.12
CHD3-215ENST00000572750 POLR3GLQ9BT43 218 aa22.02■■□□□ 1.12
CHD3-215ENST00000572750 SLIT3O75094 1523 aa22.01■■□□□ 1.11
CHD3-215ENST00000572750 USP19O94966 1318 aa22.01■■□□□ 1.11
CHD3-215ENST00000572750 COL14A1Q05707 1796 aaKnown RBP22■■□□□ 1.11
CHD3-215ENST00000572750 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22■■□□□ 1.11
CHD3-215ENST00000572750 TTC21AQ8NDW8 1320 aa22■■□□□ 1.11
CHD3-215ENST00000572750 KIF20BQ96Q89 1820 aa21.99■■□□□ 1.11
CHD3-215ENST00000572750 UNC5CLQ8IV45 518 aa21.99■■□□□ 1.11
CHD3-215ENST00000572750 NWD2Q9ULI1 1742 aa21.99■■□□□ 1.11
CHD3-215ENST00000572750 NRAPQ86VF7 1730 aa21.98■■□□□ 1.11
CHD3-215ENST00000572750 C11orf95C9JLR9 678 aaPredicted RBP21.98■■□□□ 1.11
CHD3-215ENST00000572750 SEPT12Q8IYM1 358 aa21.98■■□□□ 1.11
CHD3-215ENST00000572750 NLRP6P59044 892 aa21.96■■□□□ 1.11
CHD3-215ENST00000572750 SF3B2Q13435 895 aaKnown RBP21.96■■□□□ 1.11
CHD3-215ENST00000572750 NLRP13Q86W25 1043 aa21.96■■□□□ 1.11
CHD3-215ENST00000572750 NME9Q86XW9 330 aa21.95■■□□□ 1.1
CHD3-215ENST00000572750 KIAA0232Q92628 1395 aa21.95■■□□□ 1.1
CHD3-215ENST00000572750 NFAT5O94916 1531 aa21.94■■□□□ 1.1
CHD3-215ENST00000572750 OVOS2A0A0J9YW53 1432 aa21.93■■□□□ 1.1
CHD3-215ENST00000572750 KIF7Q2M1P5 1343 aa21.93■■□□□ 1.1
CHD3-215ENST00000572750 OVOS2Q6IE36 1432 aa21.93■■□□□ 1.1
CHD3-215ENST00000572750 LMO7Q8WWI1 1683 aa21.93■■□□□ 1.1
CHD3-215ENST00000572750 NSD3Q9BZ95 1437 aa21.93■■□□□ 1.1
CHD3-215ENST00000572750 ONECUT3O60422 494 aaPredicted RBP21.92■■□□□ 1.1
CHD3-215ENST00000572750 USP31Q70CQ4 1352 aa21.91■■□□□ 1.1
CHD3-215ENST00000572750 ZC3H6P61129 1189 aaKnown RBP21.91■■□□□ 1.1
CHD3-215ENST00000572750 PRDM11Q9NQV5 511 aa21.91■■□□□ 1.1
CHD3-215ENST00000572750 LTN1O94822 1766 aa21.9■■□□□ 1.1
CHD3-215ENST00000572750 FAM83GA6ND36 823 aa21.9■■□□□ 1.1
CHD3-215ENST00000572750 SOX12O15370 315 aa21.9■■□□□ 1.1
CHD3-215ENST00000572750 GCP02774 474 aa21.9■■□□□ 1.1
CHD3-215ENST00000572750 YY1P25490 414 aa21.9■■□□□ 1.1
CHD3-215ENST00000572750 R3HDM1Q15032 1099 aaKnown RBP21.9■■□□□ 1.1
CHD3-215ENST00000572750 CPDO75976 1380 aa21.89■■□□□ 1.1
CHD3-215ENST00000572750 CHRNA2Q15822 529 aa21.89■■□□□ 1.09
CHD3-215ENST00000572750 KRT27Q7Z3Y8 459 aa21.88■■□□□ 1.09
CHD3-215ENST00000572750 EN1Q05925 392 aaPredicted RBP21.87■■□□□ 1.09
CHD3-215ENST00000572750 CARD14Q9BXL6 1004 aa21.87■■□□□ 1.09
CHD3-215ENST00000572750 COL18A1P39060 1754 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms