RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 BLMP54132 1417 aaPredicted RBP9.86□□□□□ -0.83
VPS53-213ENST00000572334 LMOD2Q6P5Q4 547 aa9.86□□□□□ -0.83
VPS53-213ENST00000572334 CCDC125Q86Z20 511 aa9.86□□□□□ -0.83
VPS53-213ENST00000572334 SEPT12Q8IYM1 358 aa9.86□□□□□ -0.83
VPS53-213ENST00000572334 EIF3AQ14152 1382 aaKnown RBP9.86□□□□□ -0.83
VPS53-213ENST00000572334 NBPF1Q3BBV0 1214 aa9.85□□□□□ -0.83
VPS53-213ENST00000572334 GPRASP1Q5JY77 1395 aa9.85□□□□□ -0.83
VPS53-213ENST00000572334 NUDT16Q96DE0 195 aaKnown RBP9.84□□□□□ -0.83
VPS53-213ENST00000572334 BTG4Q9NY30 223 aa9.84□□□□□ -0.83
VPS53-213ENST00000572334 POLR3AO14802 1390 aaPredicted RBP9.84□□□□□ -0.83
VPS53-213ENST00000572334 QRICH2Q9H0J4 1663 aa9.83□□□□□ -0.84
VPS53-213ENST00000572334 TNS1Q9HBL0 1735 aaKnown RBP9.83□□□□□ -0.84
VPS53-213ENST00000572334 HAP1P54257 671 aaPredicted RBP9.83□□□□□ -0.84
VPS53-213ENST00000572334 DEFB132Q7Z7B7 95 aa9.83□□□□□ -0.84
VPS53-213ENST00000572334 CDK19Q9BWU1 502 aa9.83□□□□□ -0.84
VPS53-213ENST00000572334 NRKQ7Z2Y5 1582 aa9.83□□□□□ -0.84
VPS53-213ENST00000572334 LMO7Q8WWI1 1683 aa9.83□□□□□ -0.84
VPS53-213ENST00000572334 KRT27Q7Z3Y8 459 aa9.82□□□□□ -0.84
VPS53-213ENST00000572334 NGDNQ8NEJ9 315 aaKnown RBP9.82□□□□□ -0.84
VPS53-213ENST00000572334 RGPD1P0DJD0 1748 aa9.82□□□□□ -0.84
VPS53-213ENST00000572334 TRPM1Q7Z4N2 1603 aa9.82□□□□□ -0.84
VPS53-213ENST00000572334 SPATA31A5Q5VU36 1347 aa9.82□□□□□ -0.84
VPS53-213ENST00000572334 SPATA31A7Q8IWB4 1347 aa9.82□□□□□ -0.84
VPS53-213ENST00000572334 KIAA0232Q92628 1395 aa9.81□□□□□ -0.84
VPS53-213ENST00000572334 PLEKHG3A1L390 1219 aa9.81□□□□□ -0.84
VPS53-213ENST00000572334 FAM98CQ17RN3 349 aaKnown RBP9.81□□□□□ -0.84
VPS53-213ENST00000572334 ACEP12821 1306 aa9.81□□□□□ -0.84
VPS53-213ENST00000572334 NBPF8Q3BBV2 869 aa9.8□□□□□ -0.84
VPS53-213ENST00000572334 ZRANB1Q9UGI0 708 aa9.8□□□□□ -0.84
VPS53-213ENST00000572334 CCDC9Q9Y3X0 531 aaKnown RBP9.8□□□□□ -0.84
VPS53-213ENST00000572334 CAMTA1Q9Y6Y1 1673 aa9.8□□□□□ -0.84
VPS53-213ENST00000572334 PAK3O75914 559 aaPredicted RBP9.79□□□□□ -0.84
VPS53-213ENST00000572334 CHRNA2Q15822 529 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 FAM182BQ5T319 152 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 NUTM2GQ5VZR2 741 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 CCDC61Q9Y6R9 512 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 USP19O94966 1318 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 SPATA31A1Q5TZJ5 1347 aa9.79□□□□□ -0.84
VPS53-213ENST00000572334 COL18A1P39060 1754 aa9.78□□□□□ -0.84
VPS53-213ENST00000572334 AKAP12Q02952 1782 aa9.78□□□□□ -0.84
VPS53-213ENST00000572334 PRDM11Q9NQV5 511 aa9.78□□□□□ -0.84
VPS53-213ENST00000572334 LRP5O75197 1615 aa9.78□□□□□ -0.84
VPS53-213ENST00000572334 PIK3C2AO00443 1686 aa9.77□□□□□ -0.84
VPS53-213ENST00000572334 PPIP5K1Q6PFW1 1433 aa9.77□□□□□ -0.85
VPS53-213ENST00000572334 SSH2Q76I76 1423 aa9.77□□□□□ -0.85
VPS53-213ENST00000572334 ZC3H6P61129 1189 aaKnown RBP9.77□□□□□ -0.85
VPS53-213ENST00000572334 L3MBTL2Q969R5 705 aa9.77□□□□□ -0.85
VPS53-213ENST00000572334 RGPD5Q99666 1765 aa9.77□□□□□ -0.85
VPS53-213ENST00000572334 CENPJQ9HC77 1338 aaPredicted RBP9.77□□□□□ -0.85
VPS53-213ENST00000572334 CPDO75976 1380 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 DISP2A7MBM2 1401 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 SIN3AQ96ST3 1273 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 CABP2Q9NPB3 220 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 SBF2Q86WG5 1849 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 SLIT3O75094 1523 aa9.76□□□□□ -0.85
VPS53-213ENST00000572334 PARP4Q9UKK3 1724 aaKnown RBP9.76□□□□□ -0.85
VPS53-213ENST00000572334 WNK3Q9BYP7 1800 aa9.75□□□□□ -0.85
VPS53-213ENST00000572334 RREB1Q92766 1687 aa9.75□□□□□ -0.85
VPS53-213ENST00000572334 USP6P35125 1406 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 COL5A2P05997 1499 aaPredicted RBP9.74□□□□□ -0.85
VPS53-213ENST00000572334 PEAK1Q9H792 1746 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 A0A0G2JS52 829 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 MYT1Q01538 1121 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 EN1Q05925 392 aaPredicted RBP9.74□□□□□ -0.85
VPS53-213ENST00000572334 ABTB2Q8N961 1025 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 STRN4Q9NRL3 753 aa9.74□□□□□ -0.85
VPS53-213ENST00000572334 NUP188Q5SRE5 1749 aa9.73□□□□□ -0.85
VPS53-213ENST00000572334 GCP02774 474 aa9.73□□□□□ -0.85
VPS53-213ENST00000572334 SRPK2P78362 688 aaKnown RBP9.73□□□□□ -0.85
VPS53-213ENST00000572334 SF3B2Q13435 895 aaKnown RBP9.73□□□□□ -0.85
VPS53-213ENST00000572334 LARP1Q6PKG0 1096 aaKnown RBP9.73□□□□□ -0.85
VPS53-213ENST00000572334 BARGINQ6ZT62 677 aa9.73□□□□□ -0.85
VPS53-213ENST00000572334 PSDA5PKW4 1024 aaPredicted RBP9.72□□□□□ -0.85
VPS53-213ENST00000572334 BAG6P46379 1132 aa9.72□□□□□ -0.85
VPS53-213ENST00000572334 CABP1Q9NZU7 370 aa9.72□□□□□ -0.85
VPS53-213ENST00000572334 MON2Q7Z3U7 1717 aa9.72□□□□□ -0.85
VPS53-213ENST00000572334 BRD4O60885 1362 aaPredicted RBP9.72□□□□□ -0.85
VPS53-213ENST00000572334 LRRC37A3O60309 1634 aa9.71□□□□□ -0.85
VPS53-213ENST00000572334 EZH2Q15910 746 aaKnown RBP9.71□□□□□ -0.86
VPS53-213ENST00000572334 NLRP13Q86W25 1043 aa9.71□□□□□ -0.86
VPS53-213ENST00000572334 CAMKK2Q96RR4 588 aa9.71□□□□□ -0.86
VPS53-213ENST00000572334 USP35Q9P2H5 1018 aa9.71□□□□□ -0.86
VPS53-213ENST00000572334 USP54Q70EL1 1684 aa9.71□□□□□ -0.86
VPS53-213ENST00000572334 TRIM37O94972 964 aa9.7□□□□□ -0.86
VPS53-213ENST00000572334 CPSF1Q10570 1443 aaKnown RBP9.7□□□□□ -0.86
VPS53-213ENST00000572334 NFAT5O94916 1531 aa9.7□□□□□ -0.86
VPS53-213ENST00000572334 EVA1CP58658 441 aa9.69□□□□□ -0.86
VPS53-213ENST00000572334 AATKQ6ZMQ8 1374 aa9.69□□□□□ -0.86
VPS53-213ENST00000572334 FAM196AQ6ZSG2 479 aa9.69□□□□□ -0.86
VPS53-213ENST00000572334 TCP11L2Q8N4U5 519 aa9.69□□□□□ -0.86
VPS53-213ENST00000572334 AXIN2Q9Y2T1 843 aa9.69□□□□□ -0.86
VPS53-213ENST00000572334 RGPD3A6NKT7 1758 aaPredicted RBP9.68□□□□□ -0.86
VPS53-213ENST00000572334 RGPD4Q7Z3J3 1758 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 CD163L1Q9NR16 1453 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 CRB1P82279 1406 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 ROCK2O75116 1388 aaKnown RBP9.68□□□□□ -0.86
VPS53-213ENST00000572334 TTC21BQ7Z4L5 1316 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 EVC2Q86UK5 1308 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 NLRP6P59044 892 aa9.68□□□□□ -0.86
VPS53-213ENST00000572334 NEUROD1Q13562 356 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms