RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 CROCC2H7BZ55 1655 aa9.2□□□□□ -0.94
VPS53-208ENST00000570650 NUTM2DQ5VT03 806 aaPredicted RBP9.2□□□□□ -0.94
VPS53-208ENST00000570650 SETD5Q9C0A6 1442 aa9.2□□□□□ -0.94
VPS53-208ENST00000570650 KANK4Q5T7N3 995 aaPredicted RBP9.19□□□□□ -0.94
VPS53-208ENST00000570650 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS53-208ENST00000570650 QTRT2Q9H974 415 aaKnown RBP9.19□□□□□ -0.94
VPS53-208ENST00000570650 PIK3R4Q99570 1358 aa9.19□□□□□ -0.94
VPS53-208ENST00000570650 RPRD2Q5VT52 1461 aaKnown RBP9.19□□□□□ -0.94
VPS53-208ENST00000570650 DCCP43146 1447 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 DAPK1P53355 1430 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 ATAD2Q6PL18 1390 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 PAXIP1Q6ZW49 1069 aaPredicted RBP9.18□□□□□ -0.94
VPS53-208ENST00000570650 ADAMTS13Q76LX8 1427 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 ASXL1Q8IXJ9 1541 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 SPRYD3Q8NCJ5 442 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 LRRC59Q96AG4 307 aaKnown RBP9.18□□□□□ -0.94
VPS53-208ENST00000570650 NGLY1Q96IV0 654 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 C8orf37Q96NL8 207 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 ANKRD30AQ9BXX3 1397 aa9.18□□□□□ -0.94
VPS53-208ENST00000570650 VPS8Q8N3P4 1428 aa9.17□□□□□ -0.94
VPS53-208ENST00000570650 CFAP44Q96MT7 982 aa9.17□□□□□ -0.94
VPS53-208ENST00000570650 MYO5BQ9ULV0 1848 aa9.17□□□□□ -0.94
VPS53-208ENST00000570650 GCC2Q8IWJ2 1684 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 TMEM131LA2VDJ0 1609 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 C2orf72A6NCS6 295 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 KIF3CO14782 793 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 AMOTL2Q9Y2J4 779 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 NHSL1Q5SYE7 1610 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 PTPN23Q9H3S7 1636 aa9.16□□□□□ -0.94
VPS53-208ENST00000570650 SRCAPQ6ZRS2 3230 aa9.15□□□□□ -0.94
VPS53-208ENST00000570650 PNPLA6Q8IY17 1366 aa9.15□□□□□ -0.94
VPS53-208ENST00000570650 CHIC2Q9UKJ5 165 aa9.15□□□□□ -0.94
VPS53-208ENST00000570650 TRPM2O94759 1503 aa9.15□□□□□ -0.95
VPS53-208ENST00000570650 MST1RQ04912 1400 aa9.14□□□□□ -0.95
VPS53-208ENST00000570650 SETBP1Q9Y6X0 1596 aa9.14□□□□□ -0.95
VPS53-208ENST00000570650 PTPRUQ92729 1446 aa9.14□□□□□ -0.95
VPS53-208ENST00000570650 ADAMTS2O95450 1211 aa9.13□□□□□ -0.95
VPS53-208ENST00000570650 LCE2DQ5TA82 110 aaPredicted RBP9.13□□□□□ -0.95
VPS53-208ENST00000570650 HOXB3P14651 431 aaPredicted RBP9.12□□□□□ -0.95
VPS53-208ENST00000570650 CCDC125Q86Z20 511 aa9.12□□□□□ -0.95
VPS53-208ENST00000570650 TMC2Q8TDI7 906 aa9.12□□□□□ -0.95
VPS53-208ENST00000570650 DDX17Q92841 729 aaKnown RBP9.12□□□□□ -0.95
VPS53-208ENST00000570650 FAM163AQ96GL9 167 aaPredicted RBP9.12□□□□□ -0.95
VPS53-208ENST00000570650 USP21Q9UK80 565 aa9.12□□□□□ -0.95
VPS53-208ENST00000570650 TRPC5Q9UL62 973 aaPredicted RBP9.12□□□□□ -0.95
VPS53-208ENST00000570650 ADGRL2O95490 1459 aa9.11□□□□□ -0.95
VPS53-208ENST00000570650 ANKRD50Q9ULJ7 1429 aa9.11□□□□□ -0.95
VPS53-208ENST00000570650 FNBP4Q8N3X1 1017 aaPredicted RBP9.1□□□□□ -0.95
VPS53-208ENST00000570650 CRISPLD2Q9H0B8 497 aa9.1□□□□□ -0.95
VPS53-208ENST00000570650 UNC13BO14795 1591 aa9.1□□□□□ -0.95
VPS53-208ENST00000570650 XRN1Q8IZH2 1706 aaKnown RBP9.1□□□□□ -0.95
VPS53-208ENST00000570650 ATRNO75882 1429 aa9.09□□□□□ -0.95
VPS53-208ENST00000570650 PTCH1Q13635 1447 aa9.09□□□□□ -0.95
VPS53-208ENST00000570650 ADGRL3Q9HAR2 1447 aa9.09□□□□□ -0.95
VPS53-208ENST00000570650 SNPHO15079 494 aa9.09□□□□□ -0.95
VPS53-208ENST00000570650 GPHNQ9NQX3 736 aaPredicted RBP9.09□□□□□ -0.95
VPS53-208ENST00000570650 ST18O60284 1047 aa9.08□□□□□ -0.96
VPS53-208ENST00000570650 SOS2Q07890 1332 aaPredicted RBP9.07□□□□□ -0.96
VPS53-208ENST00000570650 DSG2Q14126 1118 aa9.07□□□□□ -0.96
VPS53-208ENST00000570650 C1orf167Q5SNV9 1468 aa9.07□□□□□ -0.96
VPS53-208ENST00000570650 LAMC1P11047 1609 aa9.06□□□□□ -0.96
VPS53-208ENST00000570650 NRXN3Q9Y4C0 1643 aa9.06□□□□□ -0.96
VPS53-208ENST00000570650 METP08581 1390 aa9.06□□□□□ -0.96
VPS53-208ENST00000570650 E9PCH4 1651 aa9.06□□□□□ -0.96
VPS53-208ENST00000570650 BLMP54132 1417 aaPredicted RBP9.05□□□□□ -0.96
VPS53-208ENST00000570650 FOXK1P85037 733 aa9.05□□□□□ -0.96
VPS53-208ENST00000570650 NALCNQ8IZF0 1738 aa9.05□□□□□ -0.96
VPS53-208ENST00000570650 DOK7Q18PE1 504 aa9.04□□□□□ -0.96
VPS53-208ENST00000570650 GJD4Q96KN9 370 aaPredicted RBP9.04□□□□□ -0.96
VPS53-208ENST00000570650 LARP6Q9BRS8 491 aaKnown RBP9.04□□□□□ -0.96
VPS53-208ENST00000570650 BCL9LQ86UU0 1499 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 LRP5O75197 1615 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 IQGAP3Q86VI3 1631 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 COL22A1Q8NFW1 1626 aaPredicted RBP9.03□□□□□ -0.96
VPS53-208ENST00000570650 PDE4AP27815 886 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 PLCB2Q00722 1185 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 FAM50AQ14320 339 aaKnown RBP9.03□□□□□ -0.96
VPS53-208ENST00000570650 PLPP6Q8IY26 295 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 ORAI2Q96SN7 254 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 TSHZ2Q9NRE2 1034 aa9.03□□□□□ -0.96
VPS53-208ENST00000570650 MYOM2P54296 1465 aa9.02□□□□□ -0.96
VPS53-208ENST00000570650 SF3B2Q13435 895 aaKnown RBP9.02□□□□□ -0.97
VPS53-208ENST00000570650 ZNF326Q5BKZ1 582 aaKnown RBP9.02□□□□□ -0.97
VPS53-208ENST00000570650 DEFB132Q7Z7B7 95 aa9.02□□□□□ -0.97
VPS53-208ENST00000570650 EP400Q96L91 3159 aa9.02□□□□□ -0.97
VPS53-208ENST00000570650 MFSD10Q14728 455 aa9.01□□□□□ -0.97
VPS53-208ENST00000570650 PPP1R15BQ5SWA1 713 aa9.01□□□□□ -0.97
VPS53-208ENST00000570650 ZNF710Q8N1W2 664 aa9.01□□□□□ -0.97
VPS53-208ENST00000570650 NPHP3Q7Z494 1330 aa9.01□□□□□ -0.97
VPS53-208ENST00000570650 NUP155O75694 1391 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 LOC105371045A0A1W2PR82 267 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 UNC5CLQ8IV45 518 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 MARVELD3Q96A59 401 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 DDX27Q96GQ7 796 aaKnown RBP8.99□□□□□ -0.97
VPS53-208ENST00000570650 RALGAPBQ86X10 1494 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.99□□□□□ -0.97
VPS53-208ENST00000570650 MARF1Q9Y4F3 1742 aaKnown RBP8.99□□□□□ -0.97
VPS53-208ENST00000570650 ROBO2Q9HCK4 1378 aa8.99□□□□□ -0.97
VPS53-208ENST00000570650 SPHKAPQ2M3C7 1700 aa8.98□□□□□ -0.97
VPS53-208ENST00000570650 GPR153Q6NV75 609 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms