RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RIPK4P57078 832 aa12.86□□□□□ -0.35
VPS53-206ENST00000570359 PRKAR2BP31323 418 aa12.85□□□□□ -0.35
VPS53-206ENST00000570359 FANCIQ9NVI1 1328 aa12.85□□□□□ -0.35
VPS53-206ENST00000570359 REREQ9P2R6 1566 aa12.85□□□□□ -0.35
VPS53-206ENST00000570359 HDGFP51858 240 aaKnown RBP12.85□□□□□ -0.35
VPS53-206ENST00000570359 PUS7Q96PZ0 661 aaKnown RBP12.85□□□□□ -0.35
VPS53-206ENST00000570359 ANP32AP39687 249 aaKnown RBP12.84□□□□□ -0.35
VPS53-206ENST00000570359 TMPOP42166 694 aaKnown RBP12.84□□□□□ -0.35
VPS53-206ENST00000570359 POLKQ9UBT6 870 aa12.84□□□□□ -0.35
VPS53-206ENST00000570359 ROBO2Q9HCK4 1378 aa12.84□□□□□ -0.35
VPS53-206ENST00000570359 TCERG1O14776 1098 aaKnown RBP12.84□□□□□ -0.35
VPS53-206ENST00000570359 TMEM2Q9UHN6 1383 aa12.84□□□□□ -0.35
VPS53-206ENST00000570359 PDE4AP27815 886 aa12.83□□□□□ -0.36
VPS53-206ENST00000570359 EXOSC9Q06265 439 aaKnown RBP12.83□□□□□ -0.36
VPS53-206ENST00000570359 NINLQ9Y2I6 1382 aa12.83□□□□□ -0.36
VPS53-206ENST00000570359 PRR36Q9H6K5 1346 aa12.83□□□□□ -0.36
VPS53-206ENST00000570359 EID1Q9Y6B2 187 aa12.83□□□□□ -0.36
VPS53-206ENST00000570359 ELL2O00472 640 aaPredicted RBP12.82□□□□□ -0.36
VPS53-206ENST00000570359 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
VPS53-206ENST00000570359 RLBP1P12271 317 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 RARSP54136 660 aaKnown RBP12.82□□□□□ -0.36
VPS53-206ENST00000570359 COG3Q96JB2 828 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 USP32Q8NFA0 1604 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 NRXN3Q9Y4C0 1643 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 NUTM2GQ5VZR2 741 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 CCDC61Q9Y6R9 512 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 IQSEC2Q5JU85 1478 aa12.82□□□□□ -0.36
VPS53-206ENST00000570359 NEFMP07197 916 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 MYH16Q9H6N6 1097 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 PHACTR3Q96KR7 559 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 SMC4Q9NTJ3 1288 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 IGHDP01880 384 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 PLEKHF1Q96S99 279 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 TRIM35Q9UPQ4 493 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 AMOTL2Q9Y2J4 779 aa12.81□□□□□ -0.36
VPS53-206ENST00000570359 NBR1Q14596 966 aa12.8□□□□□ -0.36
VPS53-206ENST00000570359 NLRP1Q9C000 1473 aa12.8□□□□□ -0.36
VPS53-206ENST00000570359 C14orf37Q86TY3 774 aa12.8□□□□□ -0.36
VPS53-206ENST00000570359 WDR63Q8IWG1 891 aa12.8□□□□□ -0.36
VPS53-206ENST00000570359 FTSJ3Q8IY81 847 aaKnown RBP12.8□□□□□ -0.36
VPS53-206ENST00000570359 SETD1AO15047 1707 aaKnown RBP12.79□□□□□ -0.36
VPS53-206ENST00000570359 DCTN1Q14203 1278 aa12.79□□□□□ -0.36
VPS53-206ENST00000570359 CENPQQ7L2Z9 268 aaPredicted RBP12.79□□□□□ -0.36
VPS53-206ENST00000570359 ACEP12821 1306 aa12.78□□□□□ -0.36
VPS53-206ENST00000570359 KIF20BQ96Q89 1820 aa12.78□□□□□ -0.36
VPS53-206ENST00000570359 FAM83GA6ND36 823 aa12.78□□□□□ -0.36
VPS53-206ENST00000570359 CPS1P31327 1500 aa12.78□□□□□ -0.36
VPS53-206ENST00000570359 KDM2BQ8NHM5 1336 aa12.77□□□□□ -0.36
VPS53-206ENST00000570359 UBR1Q8IWV7 1749 aa12.77□□□□□ -0.36
VPS53-206ENST00000570359 MAP2P11137 1827 aaKnown RBP12.77□□□□□ -0.37
VPS53-206ENST00000570359 ZBTB7CA1YPR0 619 aa12.77□□□□□ -0.37
VPS53-206ENST00000570359 NGEFQ8N5V2 710 aa12.77□□□□□ -0.37
VPS53-206ENST00000570359 NOP58Q9Y2X3 529 aaKnown RBP12.77□□□□□ -0.37
VPS53-206ENST00000570359 COL3A1P02461 1466 aaPredicted RBP12.76□□□□□ -0.37
VPS53-206ENST00000570359 ADAMTS13Q76LX8 1427 aa12.76□□□□□ -0.37
VPS53-206ENST00000570359 AEBP1Q8IUX7 1158 aa12.76□□□□□ -0.37
VPS53-206ENST00000570359 NGDNQ8NEJ9 315 aaKnown RBP12.76□□□□□ -0.37
VPS53-206ENST00000570359 ITPRIPQ8IWB1 547 aa12.76□□□□□ -0.37
VPS53-206ENST00000570359 SSH1Q8WYL5 1049 aa12.75□□□□□ -0.37
VPS53-206ENST00000570359 PHF23Q9BUL5 403 aaPredicted RBP12.75□□□□□ -0.37
VPS53-206ENST00000570359 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
VPS53-206ENST00000570359 RSPH6AQ9H0K4 717 aa12.75□□□□□ -0.37
VPS53-206ENST00000570359 DLC1Q96QB1 1528 aa12.75□□□□□ -0.37
VPS53-206ENST00000570359 ATP7BP35670 1465 aa12.75□□□□□ -0.37
VPS53-206ENST00000570359 EDC4Q6P2E9 1401 aaKnown RBP12.75□□□□□ -0.37
VPS53-206ENST00000570359 PRKCSHP14314 528 aaPredicted RBP12.75□□□□□ -0.37
VPS53-206ENST00000570359 PTPRUQ92729 1446 aa12.74□□□□□ -0.37
VPS53-206ENST00000570359 LRRC7Q96NW7 1537 aa12.74□□□□□ -0.37
VPS53-206ENST00000570359 ZBTB47Q9UFB7 747 aaPredicted RBP12.74□□□□□ -0.37
VPS53-206ENST00000570359 CCDC27Q2M243 656 aa12.74□□□□□ -0.37
VPS53-206ENST00000570359 NOB1Q9ULX3 412 aaKnown RBP12.74□□□□□ -0.37
VPS53-206ENST00000570359 SLC4A3P48751 1232 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 PDE3AQ14432 1141 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 HSP90AB2PQ58FF8 381 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 SULT6B1Q6IMI4 303 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 PCDHB15Q9Y5E8 787 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 ANKRD26Q9UPS8 1709 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 FCHSD2O94868 740 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 KCNA6P17658 529 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 IL13P35225 146 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 ZKSCAN2Q63HK3 967 aa12.73□□□□□ -0.37
VPS53-206ENST00000570359 LTV1Q96GA3 475 aaPredicted RBP12.73□□□□□ -0.37
VPS53-206ENST00000570359 IPO9Q96P70 1041 aaKnown RBP12.73□□□□□ -0.37
VPS53-206ENST00000570359 TTC21BQ7Z4L5 1316 aa12.72□□□□□ -0.37
VPS53-206ENST00000570359 CPSF1Q10570 1443 aaKnown RBP12.72□□□□□ -0.37
VPS53-206ENST00000570359 DZIP1LQ8IYY4 767 aaKnown RBP12.72□□□□□ -0.37
VPS53-206ENST00000570359 THEMISQ8N1K5 641 aaPredicted RBP12.72□□□□□ -0.37
VPS53-206ENST00000570359 PLEKHG1Q9ULL1 1385 aa12.72□□□□□ -0.37
VPS53-206ENST00000570359 AEBP2Q6ZN18 517 aaPredicted RBP12.71□□□□□ -0.37
VPS53-206ENST00000570359 TSPYL6Q8N831 410 aa12.71□□□□□ -0.37
VPS53-206ENST00000570359 C3P01024 1663 aa12.71□□□□□ -0.37
VPS53-206ENST00000570359 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.71□□□□□ -0.37
VPS53-206ENST00000570359 TRIM27P14373 513 aa12.71□□□□□ -0.38
VPS53-206ENST00000570359 NFE2L2Q16236 605 aa12.71□□□□□ -0.38
VPS53-206ENST00000570359 PNNQ9H307 717 aaKnown RBP12.71□□□□□ -0.38
VPS53-206ENST00000570359 FER1L4A9Z1Z3 1794 aa12.71□□□□□ -0.38
VPS53-206ENST00000570359 MS4A1P11836 297 aa12.7□□□□□ -0.38
VPS53-206ENST00000570359 FAM135BQ49AJ0 1406 aa12.7□□□□□ -0.38
VPS53-206ENST00000570359 PNPLA6Q8IY17 1366 aa12.7□□□□□ -0.38
VPS53-206ENST00000570359 EIF4A2Q14240 407 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms