RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 CTHP32929 405 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 BANK1Q8NDB2 785 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 LRRN4Q8WUT4 740 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 BAP1Q92560 729 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 PDZRN3Q9UPQ7 1066 aa6.75□□□□□ -1.33
VPS39-212ENST00000570023 NRG2O14511 850 aaPredicted RBP6.74□□□□□ -1.33
VPS39-212ENST00000570023 SOCS7O14512 581 aa6.74□□□□□ -1.33
VPS39-212ENST00000570023 TMEM132AQ24JP5 1023 aa6.74□□□□□ -1.33
VPS39-212ENST00000570023 RC3H1Q5TC82 1133 aaKnown RBP6.74□□□□□ -1.33
VPS39-212ENST00000570023 ZNF511Q8NB15 262 aa6.74□□□□□ -1.33
VPS39-212ENST00000570023 ARMC2Q8NEN0 867 aa6.74□□□□□ -1.33
VPS39-212ENST00000570023 GFRA3O60609 400 aa6.73□□□□□ -1.33
VPS39-212ENST00000570023 SH3BP2P78314 561 aa6.73□□□□□ -1.33
VPS39-212ENST00000570023 FOXC1Q12948 553 aa6.72□□□□□ -1.33
VPS39-212ENST00000570023 HMX1Q9NP08 348 aaPredicted RBP6.72□□□□□ -1.33
VPS39-212ENST00000570023 TOR4AQ9NXH8 423 aa6.72□□□□□ -1.33
VPS39-212ENST00000570023 TNFRSF10AO00220 468 aa6.71□□□□□ -1.34
VPS39-212ENST00000570023 NR6A1Q15406 480 aa6.71□□□□□ -1.34
VPS39-212ENST00000570023 GPKOWQ92917 476 aaPredicted RBP eCLIP6.71□□□□□ -1.34
VPS39-212ENST00000570023 MRGPRX2Q96LB1 330 aa6.71□□□□□ -1.34
VPS39-212ENST00000570023 BCL11AQ9H165 835 aa6.71□□□□□ -1.34
VPS39-212ENST00000570023 SIAH2O43255 324 aa6.7□□□□□ -1.34
VPS39-212ENST00000570023 LINC01559Q495D7 138 aa6.7□□□□□ -1.34
VPS39-212ENST00000570023 NBPF14Q5TI25 921 aa6.7□□□□□ -1.34
VPS39-212ENST00000570023 GJD4Q96KN9 370 aaPredicted RBP6.7□□□□□ -1.34
VPS39-212ENST00000570023 TRIM34Q9BYJ4 488 aa6.7□□□□□ -1.34
VPS39-212ENST00000570023 FKBPLQ9UIM3 349 aa6.7□□□□□ -1.34
VPS39-212ENST00000570023 ZC3H4Q9UPT8 1303 aaKnown RBP6.7□□□□□ -1.34
VPS39-212ENST00000570023 VARSP26640 1264 aaKnown RBP6.69□□□□□ -1.34
VPS39-212ENST00000570023 MPNDQ8N594 471 aa6.69□□□□□ -1.34
VPS39-212ENST00000570023 SNIP1Q8TAD8 396 aaKnown RBP6.69□□□□□ -1.34
VPS39-212ENST00000570023 EPS8L1Q8TE68 723 aa6.69□□□□□ -1.34
VPS39-212ENST00000570023 PDXDC2PQ6P474 469 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 SH3BP5LQ7L8J4 393 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 SH3RF1Q7Z6J0 888 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 BPHLQ86WA6 291 aaPredicted RBP6.68□□□□□ -1.34
VPS39-212ENST00000570023 CYP4X1Q8N118 509 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 MTMR14Q8NCE2 650 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 EHBP1Q8NDI1 1231 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 FOXJ1Q92949 421 aa6.68□□□□□ -1.34
VPS39-212ENST00000570023 DGAT1O75907 488 aa6.67□□□□□ -1.34
VPS39-212ENST00000570023 PNMA1Q8ND90 353 aa6.67□□□□□ -1.34
VPS39-212ENST00000570023 SNRKQ9NRH2 765 aa6.67□□□□□ -1.34
VPS39-212ENST00000570023 GPSM3Q9Y4H4 160 aa6.67□□□□□ -1.34
VPS39-212ENST00000570023 C4orf48Q5BLP8 95 aa6.66□□□□□ -1.34
VPS39-212ENST00000570023 C1QTNF2Q9BXJ5 285 aa6.66□□□□□ -1.34
VPS39-212ENST00000570023 TTC24A2A3L6 582 aaPredicted RBP6.65□□□□□ -1.34
VPS39-212ENST00000570023 SMPD1P17405 629 aa6.65□□□□□ -1.34
VPS39-212ENST00000570023 FAM174AQ8TBP5 190 aa6.65□□□□□ -1.34
VPS39-212ENST00000570023 CDK15Q96Q40 435 aa6.65□□□□□ -1.34
VPS39-212ENST00000570023 APBB1O00213 710 aa6.64□□□□□ -1.35
VPS39-212ENST00000570023 AVPP01185 164 aa6.64□□□□□ -1.35
VPS39-212ENST00000570023 TRMT44Q8IYL2 757 aaKnown RBP6.64□□□□□ -1.35
VPS39-212ENST00000570023 OCSTAMPQ9BR26 566 aa6.64□□□□□ -1.35
VPS39-212ENST00000570023 FAM187AA6NFU0 413 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 J3QL48 77 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 GPR37L1O60883 481 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 PTK2Q05397 1052 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 AGERQ15109 404 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 PKDCCQ504Y2 493 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 Q6ZNB5 142 aa6.63□□□□□ -1.35
VPS39-212ENST00000570023 LCE2BO14633 110 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 ALDH1A1P00352 501 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 MCM6Q14566 821 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 ARHGAP9Q9BRR9 750 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 MAP4K5Q9Y4K4 846 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 NDUFB9Q9Y6M9 179 aa6.62□□□□□ -1.35
VPS39-212ENST00000570023 ERFEQ4G0M1 354 aa6.61□□□□□ -1.35
VPS39-212ENST00000570023 CRIPAKQ8N1N5 446 aa6.61□□□□□ -1.35
VPS39-212ENST00000570023 MAGEB6P1A0A0J9YX57 407 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 ADH1CP00326 375 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 CENPBP07199 599 aaPredicted RBP6.6□□□□□ -1.35
VPS39-212ENST00000570023 GRM5P41594 1212 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 SMCPP49901 116 aaPredicted RBP6.6□□□□□ -1.35
VPS39-212ENST00000570023 TRAF7Q6Q0C0 670 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 CARD14Q9BXL6 1004 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 TLL2Q9Y6L7 1015 aa6.6□□□□□ -1.35
VPS39-212ENST00000570023 ZBBXA8MT70 800 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 FLIIQ13045 1269 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 CTC1Q2NKJ3 1217 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 ZBTB33Q86T24 672 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 ADAM32Q8TC27 787 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 HPS1Q92902 700 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 PRM3Q9NNZ6 103 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 CDV3Q9UKY7 258 aaKnown RBP6.59□□□□□ -1.35
VPS39-212ENST00000570023 WASF2Q9Y6W5 498 aa6.59□□□□□ -1.35
VPS39-212ENST00000570023 FBXO45P0C2W1 286 aa6.58□□□□□ -1.36
VPS39-212ENST00000570023 NR5A1Q13285 461 aa6.58□□□□□ -1.36
VPS39-212ENST00000570023 TBC1D2BQ9UPU7 963 aa6.58□□□□□ -1.36
VPS39-212ENST00000570023 ARID5BQ14865 1188 aa6.57□□□□□ -1.36
VPS39-212ENST00000570023 KLF16Q9BXK1 252 aaPredicted RBP6.57□□□□□ -1.36
VPS39-212ENST00000570023 AAASQ9NRG9 546 aa6.57□□□□□ -1.36
VPS39-212ENST00000570023 NR1H3Q13133 447 aa6.56□□□□□ -1.36
VPS39-212ENST00000570023 IRF5Q13568 498 aa6.56□□□□□ -1.36
VPS39-212ENST00000570023 VASH1Q7L8A9 365 aaPredicted RBP6.56□□□□□ -1.36
VPS39-212ENST00000570023 FAM9AQ8IZU1 332 aaPredicted RBP6.56□□□□□ -1.36
VPS39-212ENST00000570023 SLC10A4Q96EP9 437 aa6.56□□□□□ -1.36
VPS39-212ENST00000570023 MCCD1P59942 119 aaPredicted RBP6.55□□□□□ -1.36
VPS39-212ENST00000570023 NNTQ13423 1086 aa6.55□□□□□ -1.36
VPS39-212ENST00000570023 GDPD2Q9HCC8 539 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms