RNA–Protein interactions for RNA: ENST00000569794.1

CHD9-220, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-220ENST00000569794 LYPD8Q6UX82 237 aa12.45□□□□□ -0.42
CHD9-220ENST00000569794 MPNDQ8N594 471 aa12.45□□□□□ -0.42
CHD9-220ENST00000569794 PCDHB15Q9Y5E8 787 aa12.45□□□□□ -0.42
CHD9-220ENST00000569794 PLEKHG3A1L390 1219 aa12.43□□□□□ -0.42
CHD9-220ENST00000569794 CFAP99D6REC4 459 aa12.43□□□□□ -0.42
CHD9-220ENST00000569794 SPTLC1O15269 473 aa12.43□□□□□ -0.42
CHD9-220ENST00000569794 TRIM66O15016 1216 aa12.42□□□□□ -0.42
CHD9-220ENST00000569794 NXF1Q9UBU9 619 aaKnown RBP12.42□□□□□ -0.42
CHD9-220ENST00000569794 CTHP32929 405 aa12.41□□□□□ -0.42
CHD9-220ENST00000569794 NNTQ13423 1086 aa12.41□□□□□ -0.42
CHD9-220ENST00000569794 HRCP23327 699 aa12.4□□□□□ -0.42
CHD9-220ENST00000569794 SLC16A10Q8TF71 515 aa12.4□□□□□ -0.42
CHD9-220ENST00000569794 ZBTB3Q9H5J0 574 aa12.4□□□□□ -0.42
CHD9-220ENST00000569794 F12P00748 615 aaPredicted RBP12.38□□□□□ -0.43
CHD9-220ENST00000569794 RIC3Q7Z5B4 369 aa12.38□□□□□ -0.43
CHD9-220ENST00000569794 ZFP42Q96MM3 310 aa12.38□□□□□ -0.43
CHD9-220ENST00000569794 MAP10Q9P2G4 905 aa12.38□□□□□ -0.43
CHD9-220ENST00000569794 PRPF38BQ5VTL8 546 aaKnown RBP12.37□□□□□ -0.43
CHD9-220ENST00000569794 NPAS3Q8IXF0 933 aa12.37□□□□□ -0.43
CHD9-220ENST00000569794 FAM174AQ8TBP5 190 aa12.37□□□□□ -0.43
CHD9-220ENST00000569794 AK7Q96M32 723 aa12.37□□□□□ -0.43
CHD9-220ENST00000569794 TIMP2P16035 220 aa12.36□□□□□ -0.43
CHD9-220ENST00000569794 CABLES1Q8TDN4 633 aa12.36□□□□□ -0.43
CHD9-220ENST00000569794 ADH1CP00326 375 aa12.35□□□□□ -0.43
CHD9-220ENST00000569794 FOXJ1Q92949 421 aa12.35□□□□□ -0.43
CHD9-220ENST00000569794 WDR4P57081 412 aaKnown RBP12.34□□□□□ -0.43
CHD9-220ENST00000569794 MRPL14Q6P1L8 145 aaKnown RBP12.34□□□□□ -0.43
CHD9-220ENST00000569794 CDK15Q96Q40 435 aa12.34□□□□□ -0.43
CHD9-220ENST00000569794 KLF16Q9BXK1 252 aaPredicted RBP12.34□□□□□ -0.43
CHD9-220ENST00000569794 H3BM21 787 aa12.32□□□□□ -0.44
CHD9-220ENST00000569794 PER1O15534 1290 aaPredicted RBP12.32□□□□□ -0.44
CHD9-220ENST00000569794 GMPRP36959 345 aa12.32□□□□□ -0.44
CHD9-220ENST00000569794 VEGFBP49765 207 aa12.32□□□□□ -0.44
CHD9-220ENST00000569794 CSPP1Q1MSJ5 1256 aa12.32□□□□□ -0.44
CHD9-220ENST00000569794 IRF7Q92985 503 aa12.32□□□□□ -0.44
CHD9-220ENST00000569794 SCARF1Q14162 830 aa12.3□□□□□ -0.44
CHD9-220ENST00000569794 C4orf48Q5BLP8 95 aa12.3□□□□□ -0.44
CHD9-220ENST00000569794 MYSM1Q5VVJ2 828 aa12.3□□□□□ -0.44
CHD9-220ENST00000569794 PURBQ96QR8 312 aaKnown RBP12.3□□□□□ -0.44
CHD9-220ENST00000569794 LIMD1Q9UGP4 676 aa12.3□□□□□ -0.44
CHD9-220ENST00000569794 ARID5BQ14865 1188 aa12.29□□□□□ -0.44
CHD9-220ENST00000569794 QPCTQ16769 361 aa12.28□□□□□ -0.44
CHD9-220ENST00000569794 PDE4DQ08499 809 aa12.27□□□□□ -0.45
CHD9-220ENST00000569794 AGERQ15109 404 aa12.27□□□□□ -0.45
CHD9-220ENST00000569794 TUSC1Q2TAM9 212 aa12.27□□□□□ -0.45
CHD9-220ENST00000569794 BPHLQ86WA6 291 aaPredicted RBP12.27□□□□□ -0.45
CHD9-220ENST00000569794 ERBB4Q15303 1308 aa12.27□□□□□ -0.45
CHD9-220ENST00000569794 ZIC2O95409 532 aaPredicted RBP12.26□□□□□ -0.45
CHD9-220ENST00000569794 NR3C2P08235 984 aa12.26□□□□□ -0.45
CHD9-220ENST00000569794 NR5A1Q13285 461 aa12.26□□□□□ -0.45
CHD9-220ENST00000569794 TSC1Q92574 1164 aa12.26□□□□□ -0.45
CHD9-220ENST00000569794 NUTM2BA6NNL0 878 aaPredicted RBP12.25□□□□□ -0.45
CHD9-220ENST00000569794 NUTM2EB1AL46 878 aaPredicted RBP12.25□□□□□ -0.45
CHD9-220ENST00000569794 LILRB3O75022 631 aa12.25□□□□□ -0.45
CHD9-220ENST00000569794 LORP23490 312 aaPredicted RBP12.25□□□□□ -0.45
CHD9-220ENST00000569794 GRM5P41594 1212 aa12.25□□□□□ -0.45
CHD9-220ENST00000569794 NUTM2DQ5VT03 806 aaPredicted RBP12.25□□□□□ -0.45
CHD9-220ENST00000569794 NUTM2AQ8IVF1 878 aaPredicted RBP12.25□□□□□ -0.45
CHD9-220ENST00000569794 ITPKCQ96DU7 683 aa12.25□□□□□ -0.45
CHD9-220ENST00000569794 ZFAND3Q9H8U3 227 aa12.25□□□□□ -0.45
CHD9-220ENST00000569794 SOBPA7XYQ1 873 aa12.23□□□□□ -0.45
CHD9-220ENST00000569794 ZSCAN1Q8NBB4 408 aa12.22□□□□□ -0.45
CHD9-220ENST00000569794 ARMC2Q8NEN0 867 aa12.22□□□□□ -0.45
CHD9-220ENST00000569794 FAM181BA6NEQ2 426 aa12.21□□□□□ -0.45
CHD9-220ENST00000569794 SH3RF1Q7Z6J0 888 aa12.21□□□□□ -0.45
CHD9-220ENST00000569794 C1QTNF2Q9BXJ5 285 aa12.21□□□□□ -0.45
CHD9-220ENST00000569794 RTL5Q5HYW3 569 aaPredicted RBP12.2□□□□□ -0.46
CHD9-220ENST00000569794 C6orf118Q5T5N4 469 aa12.19□□□□□ -0.46
CHD9-220ENST00000569794 NBPF14Q5TI25 921 aa12.19□□□□□ -0.46
CHD9-220ENST00000569794 HELBQ8NG08 1087 aaPredicted RBP12.19□□□□□ -0.46
CHD9-220ENST00000569794 SH3BP5LQ7L8J4 393 aa12.18□□□□□ -0.46
CHD9-220ENST00000569794 MAN1A2O60476 641 aa12.17□□□□□ -0.46
CHD9-220ENST00000569794 VSIG8P0DPA2 414 aa12.17□□□□□ -0.46
CHD9-220ENST00000569794 CLK2P49760 499 aaKnown RBP12.17□□□□□ -0.46
CHD9-220ENST00000569794 MEIOBQ8N635 442 aa12.17□□□□□ -0.46
CHD9-220ENST00000569794 SLC24A3Q9HC58 644 aa12.17□□□□□ -0.46
CHD9-220ENST00000569794 MAP4K5Q9Y4K4 846 aa12.17□□□□□ -0.46
CHD9-220ENST00000569794 FSHRP23945 695 aa12.16□□□□□ -0.46
CHD9-220ENST00000569794 TRMT44Q8IYL2 757 aaKnown RBP12.16□□□□□ -0.46
CHD9-220ENST00000569794 LINC00528Q8N1L1 170 aa12.15□□□□□ -0.46
CHD9-220ENST00000569794 UPP2O95045 317 aa12.14□□□□□ -0.47
CHD9-220ENST00000569794 BMP2P12643 396 aa12.14□□□□□ -0.47
CHD9-220ENST00000569794 MAGEB6P1A0A0J9YX57 407 aa12.13□□□□□ -0.47
CHD9-220ENST00000569794 VASH1Q7L8A9 365 aaPredicted RBP12.13□□□□□ -0.47
CHD9-220ENST00000569794 RSPH6AQ9H0K4 717 aa12.13□□□□□ -0.47
CHD9-220ENST00000569794 POLR3EQ9NVU0 708 aa12.12□□□□□ -0.47
CHD9-220ENST00000569794 GPKOWQ92917 476 aaPredicted RBP eCLIP12.11□□□□□ -0.47
CHD9-220ENST00000569794 SOS2Q07890 1332 aaPredicted RBP12.11□□□□□ -0.47
CHD9-220ENST00000569794 CARD14Q9BXL6 1004 aa12.1□□□□□ -0.47
CHD9-220ENST00000569794 EMILIN1Q9Y6C2 1016 aa12.1□□□□□ -0.47
CHD9-220ENST00000569794 CCDC116Q8IYX3 515 aa12.09□□□□□ -0.47
CHD9-220ENST00000569794 DNMT3LQ9UJW3 386 aa12.09□□□□□ -0.47
CHD9-220ENST00000569794 PPFIA3O75145 1194 aa12.08□□□□□ -0.48
CHD9-220ENST00000569794 CTDSPL2Q05D32 466 aa12.08□□□□□ -0.48
CHD9-220ENST00000569794 ERFEQ4G0M1 354 aa12.08□□□□□ -0.48
CHD9-220ENST00000569794 TSEN34Q9BSV6 310 aaKnown RBP12.08□□□□□ -0.48
CHD9-220ENST00000569794 PDXDC2PQ6P474 469 aa12.04□□□□□ -0.48
CHD9-220ENST00000569794 PPP1R26Q5T8A7 1209 aaPredicted RBP12.03□□□□□ -0.48
CHD9-220ENST00000569794 LRRN4Q8WUT4 740 aa12.03□□□□□ -0.48
CHD9-220ENST00000569794 ARHGAP9Q9BRR9 750 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms