RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, human

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-209	ENST00000569336	KIF20B	Q96Q89	1820 aa		13.88	□□□□□ -0.19
CLN6-209	ENST00000569336	BRD4	O60885	1362 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN6-209	ENST00000569336	MYOM1	P52179	1685 aa		13.88	□□□□□ -0.19
CLN6-209	ENST00000569336	LTN1	O94822	1766 aa		13.87	□□□□□ -0.19
CLN6-209	ENST00000569336	SLC24A1	O60721	1099 aa		13.87	□□□□□ -0.19
CLN6-209	ENST00000569336	ZNF772	Q68DY9	489 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN6-209	ENST00000569336	USP47	Q96K76	1375 aa		13.86	□□□□□ -0.19
CLN6-209	ENST00000569336	PLEKHG3	A1L390	1219 aa		13.86	□□□□□ -0.19
CLN6-209	ENST00000569336	CABP2	Q9NPB3	220 aa		13.86	□□□□□ -0.19
CLN6-209	ENST00000569336	ACE	P12821	1306 aa		13.86	□□□□□ -0.19
CLN6-209	ENST00000569336	HAP1	P54257	671 aa	Predicted RBP	13.85	□□□□□ -0.19
CLN6-209	ENST00000569336	LMOD2	Q6P5Q4	547 aa		13.85	□□□□□ -0.19
CLN6-209	ENST00000569336	C8orf37	Q96NL8	207 aa		13.85	□□□□□ -0.19
CLN6-209	ENST00000569336	AFF2	P51816	1311 aa		13.85	□□□□□ -0.19
CLN6-209	ENST00000569336	RGPD5	Q99666	1765 aa		13.84	□□□□□ -0.19
CLN6-209	ENST00000569336	USP6	P35125	1406 aa		13.84	□□□□□ -0.19
CLN6-209	ENST00000569336	ADAMTS2	O95450	1211 aa		13.84	□□□□□ -0.19
CLN6-209	ENST00000569336	RXRB	P28702	533 aa		13.84	□□□□□ -0.19
CLN6-209	ENST00000569336	BRWD3	Q6RI45	1802 aa		13.83	□□□□□ -0.2
CLN6-209	ENST00000569336	EP400	Q96L91	3159 aa		13.83	□□□□□ -0.2
CLN6-209	ENST00000569336	PAK3	O75914	559 aa	Predicted RBP	13.83	□□□□□ -0.2
CLN6-209	ENST00000569336	NINL	Q9Y2I6	1382 aa		13.83	□□□□□ -0.2
CLN6-209	ENST00000569336	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.82	□□□□□ -0.2
CLN6-209	ENST00000569336	NGLY1	Q96IV0	654 aa		13.82	□□□□□ -0.2
CLN6-209	ENST00000569336	WNK3	Q9BYP7	1800 aa		13.81	□□□□□ -0.2
CLN6-209	ENST00000569336	SLIT2	O94813	1529 aa		13.8	□□□□□ -0.2
CLN6-209	ENST00000569336	LMO7	Q8WWI1	1683 aa		13.8	□□□□□ -0.2
CLN6-209	ENST00000569336	ST20-MTHFS	A0A0A6YYL1	179 aa		13.8	□□□□□ -0.2
CLN6-209	ENST00000569336	SLIT3	O75094	1523 aa		13.8	□□□□□ -0.2
CLN6-209	ENST00000569336	ANKRD26	Q9UPS8	1709 aa		13.79	□□□□□ -0.2
CLN6-209	ENST00000569336	PUS7	Q96PZ0	661 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-209	ENST00000569336	CABP1	Q9NZU7	370 aa		13.79	□□□□□ -0.2
CLN6-209	ENST00000569336	CPSF1	Q10570	1443 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-209	ENST00000569336	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	TESK2	Q96S53	571 aa		13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	ZNF692	Q9BU19	519 aa	Predicted RBP	13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	USP21	Q9UK80	565 aa		13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	KTN1	Q86UP2	1357 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	ATRN	O75882	1429 aa		13.78	□□□□□ -0.2
CLN6-209	ENST00000569336	GLI3	P10071	1580 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	TMF1	P82094	1093 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	SSH2	Q76I76	1423 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	BCL9L	Q86UU0	1499 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	ABTB2	Q8N961	1025 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	CABLES1	Q8TDN4	633 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	CD163L1	Q9NR16	1453 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	ZRANB1	Q9UGI0	708 aa		13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	FAM208A	Q9UK61	1670 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-209	ENST00000569336	COL18A1	P39060	1754 aa		13.76	□□□□□ -0.21
CLN6-209	ENST00000569336	EDC4	Q6P2E9	1401 aa	Known RBP	13.76	□□□□□ -0.21
CLN6-209	ENST00000569336	TTC21A	Q8NDW8	1320 aa		13.76	□□□□□ -0.21
CLN6-209	ENST00000569336	CDCA8	Q53HL2	280 aa		13.76	□□□□□ -0.21
CLN6-209	ENST00000569336	TRPC5	Q9UL62	973 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-209	ENST00000569336	ABCC6	O95255	1503 aa		13.75	□□□□□ -0.21
CLN6-209	ENST00000569336	USP19	O94966	1318 aa		13.75	□□□□□ -0.21
CLN6-209	ENST00000569336	PLEKHG5	O94827	1062 aa		13.75	□□□□□ -0.21
CLN6-209	ENST00000569336	NLRP13	Q86W25	1043 aa		13.75	□□□□□ -0.21
CLN6-209	ENST00000569336	TERF2IP	Q9NYB0	399 aa		13.75	□□□□□ -0.21
CLN6-209	ENST00000569336	RBM6	P78332	1123 aa	Known RBP	13.74	□□□□□ -0.21
CLN6-209	ENST00000569336	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.74	□□□□□ -0.21
CLN6-209	ENST00000569336	TMC1	Q8TDI8	760 aa		13.74	□□□□□ -0.21
CLN6-209	ENST00000569336		A0A1W2PP64	1363 aa		13.73	□□□□□ -0.21
CLN6-209	ENST00000569336	QTRT2	Q9H974	415 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-209	ENST00000569336	NFAT5	O94916	1531 aa		13.73	□□□□□ -0.21
CLN6-209	ENST00000569336	SRCAP	Q6ZRS2	3230 aa		13.73	□□□□□ -0.21
CLN6-209	ENST00000569336	RGS12	O14924	1447 aa		13.73	□□□□□ -0.21
CLN6-209	ENST00000569336	CPD	O75976	1380 aa		13.72	□□□□□ -0.21
CLN6-209	ENST00000569336	MAP2	P11137	1827 aa	Known RBP	13.72	□□□□□ -0.21
CLN6-209	ENST00000569336	UNC5CL	Q8IV45	518 aa		13.72	□□□□□ -0.21
CLN6-209	ENST00000569336	PRDM11	Q9NQV5	511 aa		13.72	□□□□□ -0.21
CLN6-209	ENST00000569336	ANKRD36B	Q8N2N9	1353 aa		13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	KIAA0232	Q92628	1395 aa		13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	TTC21B	Q7Z4L5	1316 aa		13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	NUTM2G	Q5VZR2	741 aa		13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	THSD7A	Q9UPZ6	1657 aa		13.71	□□□□□ -0.21
CLN6-209	ENST00000569336	PARP4	Q9UKK3	1724 aa	Known RBP	13.7	□□□□□ -0.22
CLN6-209	ENST00000569336	NLRP6	P59044	892 aa		13.7	□□□□□ -0.22
CLN6-209	ENST00000569336	CAMTA1	Q9Y6Y1	1673 aa		13.69	□□□□□ -0.22
CLN6-209	ENST00000569336	FAM83G	A6ND36	823 aa		13.68	□□□□□ -0.22
CLN6-209	ENST00000569336	KCNH5	Q8NCM2	988 aa		13.68	□□□□□ -0.22
CLN6-209	ENST00000569336	SLC12A5	Q9H2X9	1139 aa		13.68	□□□□□ -0.22
CLN6-209	ENST00000569336	BTG4	Q9NY30	223 aa		13.68	□□□□□ -0.22
CLN6-209	ENST00000569336	USP31	Q70CQ4	1352 aa		13.68	□□□□□ -0.22
CLN6-209	ENST00000569336	RGPD1	P0DJD0	1748 aa		13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	OVOS2	A0A0J9YW53	1432 aa		13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	OVOS2	Q6IE36	1432 aa		13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	VPS72	Q15906	364 aa		13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	GJD4	Q96KN9	370 aa	Predicted RBP	13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	RGPD2	P0DJD1	1756 aa		13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	COL5A2	P05997	1499 aa	Predicted RBP	13.67	□□□□□ -0.22
CLN6-209	ENST00000569336	GC	P02774	474 aa		13.66	□□□□□ -0.22
CLN6-209	ENST00000569336	ZC3H6	P61129	1189 aa	Known RBP	13.66	□□□□□ -0.22
CLN6-209	ENST00000569336	CCDC9	Q9Y3X0	531 aa	Known RBP	13.66	□□□□□ -0.22
CLN6-209	ENST00000569336	SBF2	Q86WG5	1849 aa		13.65	□□□□□ -0.22
CLN6-209	ENST00000569336	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
CLN6-209	ENST00000569336	AATK	Q6ZMQ8	1374 aa		13.65	□□□□□ -0.22
CLN6-209	ENST00000569336	KAT6B	Q8WYB5	2073 aa		13.64	□□□□□ -0.23
CLN6-209	ENST00000569336	HSPA5	P11021	654 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-209	ENST00000569336	LRRC37A3	O60309	1634 aa		13.64	□□□□□ -0.23

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