RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 VSIG10Q8N0Z9 540 aa18■□□□□ 0.47
VPS35-210ENST00000568784 ZBTB40Q9NUA8 1239 aa18■□□□□ 0.47
VPS35-210ENST00000568784 FYB1O15117 783 aa17.99■□□□□ 0.47
VPS35-210ENST00000568784 TSPYL6Q8N831 410 aa17.99■□□□□ 0.47
VPS35-210ENST00000568784 SMC5Q8IY18 1101 aa17.99■□□□□ 0.47
VPS35-210ENST00000568784 TRPM2O94759 1503 aa17.98■□□□□ 0.47
VPS35-210ENST00000568784 TBC1D9Q6ZT07 1266 aa17.98■□□□□ 0.47
VPS35-210ENST00000568784 LAMC1P11047 1609 aa17.97■□□□□ 0.47
VPS35-210ENST00000568784 NUCB1Q02818 461 aa17.97■□□□□ 0.47
VPS35-210ENST00000568784 SLC4A10Q6U841 1118 aa17.97■□□□□ 0.47
VPS35-210ENST00000568784 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
VPS35-210ENST00000568784 K7ELQ4 463 aaPredicted RBP17.96■□□□□ 0.47
VPS35-210ENST00000568784 CT47B1P0C2W7 299 aaPredicted RBP17.96■□□□□ 0.47
VPS35-210ENST00000568784 CD2BP2O95400 341 aaKnown RBP17.96■□□□□ 0.47
VPS35-210ENST00000568784 MSNP26038 577 aaKnown RBP17.96■□□□□ 0.47
VPS35-210ENST00000568784 CALD1Q05682 793 aaKnown RBP17.96■□□□□ 0.47
VPS35-210ENST00000568784 IDI1Q13907 227 aa17.96■□□□□ 0.47
VPS35-210ENST00000568784 CDK19Q9BWU1 502 aa17.96■□□□□ 0.47
VPS35-210ENST00000568784 CAVIN1Q6NZI2 390 aaKnown RBP17.95■□□□□ 0.46
VPS35-210ENST00000568784 PLXNC1O60486 1568 aa17.95■□□□□ 0.46
VPS35-210ENST00000568784 FAM83GA6ND36 823 aa17.95■□□□□ 0.46
VPS35-210ENST00000568784 TWISTNBQ3B726 338 aaPredicted RBP17.95■□□□□ 0.46
VPS35-210ENST00000568784 EMILIN1Q9Y6C2 1016 aa17.95■□□□□ 0.46
VPS35-210ENST00000568784 PHACTR3Q96KR7 559 aa17.95■□□□□ 0.46
VPS35-210ENST00000568784 NASPP49321 788 aaPredicted RBP17.95■□□□□ 0.46
VPS35-210ENST00000568784 CHMP4BQ9H444 224 aaKnown RBP17.95■□□□□ 0.46
VPS35-210ENST00000568784 A0A1W2PP64 1363 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 ATAD2Q6PL18 1390 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 GAS2L3Q86XJ1 694 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 CLASP1Q7Z460 1538 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 WAPLQ7Z5K2 1190 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 GAS2L2Q8NHY3 880 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 PHF23Q9BUL5 403 aaPredicted RBP17.94■□□□□ 0.46
VPS35-210ENST00000568784 ANKRD36BQ8N2N9 1353 aa17.94■□□□□ 0.46
VPS35-210ENST00000568784 RRS1Q15050 365 aaKnown RBP17.94■□□□□ 0.46
VPS35-210ENST00000568784 UBE2Q2Q8WVN8 375 aa17.93■□□□□ 0.46
VPS35-210ENST00000568784 SMARCA5O60264 1052 aaPredicted RBP17.93■□□□□ 0.46
VPS35-210ENST00000568784 CDC45O75419 566 aa17.93■□□□□ 0.46
VPS35-210ENST00000568784 C16orf71Q8IYS4 520 aaPredicted RBP17.93■□□□□ 0.46
VPS35-210ENST00000568784 CASC1Q6TDU7 716 aa17.92■□□□□ 0.46
VPS35-210ENST00000568784 ABCC1P33527 1531 aa17.92■□□□□ 0.46
VPS35-210ENST00000568784 SKOR2Q2VWA4 1001 aaPredicted RBP17.92■□□□□ 0.46
VPS35-210ENST00000568784 IQGAP1P46940 1657 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 FSD2A1L4K1 749 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 ZNF518AQ6AHZ1 1483 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 RNF17Q9BXT8 1623 aaKnown RBP17.91■□□□□ 0.46
VPS35-210ENST00000568784 CLCN1P35523 988 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 BMP2KLQ5H9B9 411 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 GCC1Q96CN9 775 aa17.91■□□□□ 0.46
VPS35-210ENST00000568784 GNAI1P63096 354 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 ZRANB1Q9UGI0 708 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 NLRP1Q9C000 1473 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 RTEL1-TNFRSF6BF6WH68 1400 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 PLEKHG5O94827 1062 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 ATP7AQ04656 1500 aa17.9■□□□□ 0.46
VPS35-210ENST00000568784 PTMAP06454 111 aaKnown RBP17.9■□□□□ 0.46
VPS35-210ENST00000568784 PLEKHF1Q96S99 279 aa17.89■□□□□ 0.46
VPS35-210ENST00000568784 KRT24Q2M2I5 525 aa17.89■□□□□ 0.45
VPS35-210ENST00000568784 NECTIN2Q92692 538 aa17.89■□□□□ 0.45
VPS35-210ENST00000568784 PRPF40AO75400 957 aaKnown RBP17.89■□□□□ 0.45
VPS35-210ENST00000568784 FCHSD2O94868 740 aa17.89■□□□□ 0.45
VPS35-210ENST00000568784 MPNDQ8N594 471 aa17.89■□□□□ 0.45
VPS35-210ENST00000568784 RNF214Q8ND24 703 aa17.89■□□□□ 0.45
VPS35-210ENST00000568784 MBIPQ9NS73 344 aa17.88■□□□□ 0.45
VPS35-210ENST00000568784 NFE2L2Q16236 605 aa17.88■□□□□ 0.45
VPS35-210ENST00000568784 FBXO31Q5XUX0 539 aaPredicted RBP17.88■□□□□ 0.45
VPS35-210ENST00000568784 C8orf58Q8NAV2 365 aa17.88■□□□□ 0.45
VPS35-210ENST00000568784 NME9Q86XW9 330 aa17.87■□□□□ 0.45
VPS35-210ENST00000568784 RBM25P49756 843 aaKnown RBP17.87■□□□□ 0.45
VPS35-210ENST00000568784 PLCB2Q00722 1185 aa17.87■□□□□ 0.45
VPS35-210ENST00000568784 OTUD7AQ8TE49 926 aaPredicted RBP17.87■□□□□ 0.45
VPS35-210ENST00000568784 CHAMP1Q96JM3 812 aa17.87■□□□□ 0.45
VPS35-210ENST00000568784 ABCC11Q96J66 1382 aa17.87■□□□□ 0.45
VPS35-210ENST00000568784 ZBTB7BO15156 539 aaPredicted RBP17.87■□□□□ 0.45
VPS35-210ENST00000568784 VAMP4O75379 141 aa17.87■□□□□ 0.45
VPS35-210ENST00000568784 API5Q9BZZ5 524 aaKnown RBP17.87■□□□□ 0.45
VPS35-210ENST00000568784 RAB3GAP1Q15042 981 aa17.86■□□□□ 0.45
VPS35-210ENST00000568784 ALDH1L2Q3SY69 923 aa17.86■□□□□ 0.45
VPS35-210ENST00000568784 SPHKAPQ2M3C7 1700 aa17.86■□□□□ 0.45
VPS35-210ENST00000568784 MIS18AQ9NYP9 233 aa17.86■□□□□ 0.45
VPS35-210ENST00000568784 CIZ1Q9ULV3 898 aaPredicted RBP17.86■□□□□ 0.45
VPS35-210ENST00000568784 ABCA6Q8N139 1617 aa17.86■□□□□ 0.45
VPS35-210ENST00000568784 RBM10P98175 930 aaKnown RBP17.86■□□□□ 0.45
VPS35-210ENST00000568784 RPGRIP1LQ68CZ1 1315 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 CD109Q6YHK3 1445 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 ZFYVE16Q7Z3T8 1539 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 ERBB4Q15303 1308 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 TRIM6-TRIM34B2RNG4 842 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 BAG4O95429 457 aaKnown RBP17.85■□□□□ 0.45
VPS35-210ENST00000568784 SBNO2Q9Y2G9 1366 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 ST18O60284 1047 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 TSHZ3Q63HK5 1081 aa17.85■□□□□ 0.45
VPS35-210ENST00000568784 MRPL50Q8N5N7 158 aaKnown RBP17.84■□□□□ 0.45
VPS35-210ENST00000568784 SNX21Q969T3 373 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 RBM27Q9P2N5 1060 aaKnown RBP17.84■□□□□ 0.45
VPS35-210ENST00000568784 POLKQ9UBT6 870 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 RILPL2Q969X0 211 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 MYOM1P52179 1685 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 MAP3K4Q9Y6R4 1608 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 DNTTIP2Q5QJE6 756 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms