RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CCDC9Q9Y3X0 531 aaKnown RBP21.78■■□□□ 1.08
CLN3-236ENST00000568558 ONECUT3O60422 494 aaPredicted RBP21.77■■□□□ 1.08
CLN3-236ENST00000568558 NGDNQ8NEJ9 315 aaKnown RBP21.77■■□□□ 1.08
CLN3-236ENST00000568558 ZRANB1Q9UGI0 708 aa21.75■■□□□ 1.07
CLN3-236ENST00000568558 NUDT16Q96DE0 195 aaKnown RBP21.74■■□□□ 1.07
CLN3-236ENST00000568558 BTG4Q9NY30 223 aa21.74■■□□□ 1.07
CLN3-236ENST00000568558 PAK3O75914 559 aaPredicted RBP21.73■■□□□ 1.07
CLN3-236ENST00000568558 KRT27Q7Z3Y8 459 aa21.72■■□□□ 1.07
CLN3-236ENST00000568558 SRCAPQ6ZRS2 3230 aa21.71■■□□□ 1.07
CLN3-236ENST00000568558 THSD7AQ9UPZ6 1657 aa21.71■■□□□ 1.07
CLN3-236ENST00000568558 CDK19Q9BWU1 502 aa21.7■■□□□ 1.06
CLN3-236ENST00000568558 POLR3AO14802 1390 aaPredicted RBP21.7■■□□□ 1.06
CLN3-236ENST00000568558 FAM98CQ17RN3 349 aaKnown RBP21.69■■□□□ 1.06
CLN3-236ENST00000568558 QRICH2Q9H0J4 1663 aa21.69■■□□□ 1.06
CLN3-236ENST00000568558 RGPD1P0DJD0 1748 aa21.69■■□□□ 1.06
CLN3-236ENST00000568558 DEFB132Q7Z7B7 95 aa21.68■■□□□ 1.06
CLN3-236ENST00000568558 A0A0G2JS52 829 aa21.67■■□□□ 1.06
CLN3-236ENST00000568558 MYT1Q01538 1121 aa21.67■■□□□ 1.06
CLN3-236ENST00000568558 SF3B2Q13435 895 aaKnown RBP21.67■■□□□ 1.06
CLN3-236ENST00000568558 NBPF1Q3BBV0 1214 aa21.67■■□□□ 1.06
CLN3-236ENST00000568558 PRDM11Q9NQV5 511 aa21.67■■□□□ 1.06
CLN3-236ENST00000568558 NRKQ7Z2Y5 1582 aa21.66■■□□□ 1.06
CLN3-236ENST00000568558 SPATA31A5Q5VU36 1347 aa21.66■■□□□ 1.06
CLN3-236ENST00000568558 SPATA31A7Q8IWB4 1347 aa21.66■■□□□ 1.06
CLN3-236ENST00000568558 CCDC61Q9Y6R9 512 aa21.66■■□□□ 1.06
CLN3-236ENST00000568558 KIAA0232Q92628 1395 aa21.65■■□□□ 1.06
CLN3-236ENST00000568558 ACEP12821 1306 aa21.65■■□□□ 1.06
CLN3-236ENST00000568558 PLEKHG3A1L390 1219 aa21.64■■□□□ 1.05
CLN3-236ENST00000568558 TNS1Q9HBL0 1735 aaKnown RBP21.63■■□□□ 1.05
CLN3-236ENST00000568558 NBPF8Q3BBV2 869 aa21.63■■□□□ 1.05
CLN3-236ENST00000568558 TRPM1Q7Z4N2 1603 aa21.62■■□□□ 1.05
CLN3-236ENST00000568558 CENPJQ9HC77 1338 aaPredicted RBP21.61■■□□□ 1.05
CLN3-236ENST00000568558 LMO7Q8WWI1 1683 aa21.61■■□□□ 1.05
CLN3-236ENST00000568558 NUTM2GQ5VZR2 741 aa21.61■■□□□ 1.05
CLN3-236ENST00000568558 PPIP5K1Q6PFW1 1433 aa21.61■■□□□ 1.05
CLN3-236ENST00000568558 CHRNA2Q15822 529 aa21.6■■□□□ 1.05
CLN3-236ENST00000568558 ZC3H6P61129 1189 aaKnown RBP21.59■■□□□ 1.05
CLN3-236ENST00000568558 SPATA31A1Q5TZJ5 1347 aa21.58■■□□□ 1.05
CLN3-236ENST00000568558 BAG6P46379 1132 aa21.58■■□□□ 1.05
CLN3-236ENST00000568558 SRPK2P78362 688 aaKnown RBP21.57■■□□□ 1.04
CLN3-236ENST00000568558 LRP5O75197 1615 aa21.57■■□□□ 1.04
CLN3-236ENST00000568558 CAMTA1Q9Y6Y1 1673 aa21.56■■□□□ 1.04
CLN3-236ENST00000568558 USP19O94966 1318 aa21.56■■□□□ 1.04
CLN3-236ENST00000568558 FAM182BQ5T319 152 aa21.56■■□□□ 1.04
CLN3-236ENST00000568558 ABTB2Q8N961 1025 aa21.56■■□□□ 1.04
CLN3-236ENST00000568558 STRN4Q9NRL3 753 aa21.56■■□□□ 1.04
CLN3-236ENST00000568558 SSH2Q76I76 1423 aa21.55■■□□□ 1.04
CLN3-236ENST00000568558 CABP2Q9NPB3 220 aa21.55■■□□□ 1.04
CLN3-236ENST00000568558 CPDO75976 1380 aa21.55■■□□□ 1.04
CLN3-236ENST00000568558 L3MBTL2Q969R5 705 aa21.54■■□□□ 1.04
CLN3-236ENST00000568558 BRD4O60885 1362 aaPredicted RBP21.53■■□□□ 1.04
CLN3-236ENST00000568558 DISP2A7MBM2 1401 aa21.53■■□□□ 1.04
CLN3-236ENST00000568558 PIK3C2AO00443 1686 aa21.52■■□□□ 1.04
CLN3-236ENST00000568558 AKAP12Q02952 1782 aa21.51■■□□□ 1.03
CLN3-236ENST00000568558 NLRP13Q86W25 1043 aa21.51■■□□□ 1.03
CLN3-236ENST00000568558 USP6P35125 1406 aa21.51■■□□□ 1.03
CLN3-236ENST00000568558 SLIT3O75094 1523 aa21.5■■□□□ 1.03
CLN3-236ENST00000568558 PARP4Q9UKK3 1724 aaKnown RBP21.5■■□□□ 1.03
CLN3-236ENST00000568558 EN1Q05925 392 aaPredicted RBP21.5■■□□□ 1.03
CLN3-236ENST00000568558 EVA1CP58658 441 aa21.49■■□□□ 1.03
CLN3-236ENST00000568558 SIN3AQ96ST3 1273 aa21.49■■□□□ 1.03
CLN3-236ENST00000568558 USP35Q9P2H5 1018 aa21.49■■□□□ 1.03
CLN3-236ENST00000568558 COL5A2P05997 1499 aaPredicted RBP21.48■■□□□ 1.03
CLN3-236ENST00000568558 GCP02774 474 aa21.48■■□□□ 1.03
CLN3-236ENST00000568558 BARGINQ6ZT62 677 aa21.48■■□□□ 1.03
CLN3-236ENST00000568558 CABP1Q9NZU7 370 aa21.48■■□□□ 1.03
CLN3-236ENST00000568558 COL18A1P39060 1754 aa21.47■■□□□ 1.03
CLN3-236ENST00000568558 LARP1Q6PKG0 1096 aaKnown RBP21.47■■□□□ 1.03
CLN3-236ENST00000568558 RREB1Q92766 1687 aa21.47■■□□□ 1.03
CLN3-236ENST00000568558 WNK3Q9BYP7 1800 aa21.46■■□□□ 1.03
CLN3-236ENST00000568558 PSDA5PKW4 1024 aaPredicted RBP21.46■■□□□ 1.03
CLN3-236ENST00000568558 FAM196AQ6ZSG2 479 aa21.46■■□□□ 1.03
CLN3-236ENST00000568558 EVC2Q86UK5 1308 aa21.45■■□□□ 1.02
CLN3-236ENST00000568558 RGPD5Q99666 1765 aa21.44■■□□□ 1.02
CLN3-236ENST00000568558 TCP11L2Q8N4U5 519 aa21.44■■□□□ 1.02
CLN3-236ENST00000568558 ROCK2O75116 1388 aaKnown RBP21.44■■□□□ 1.02
CLN3-236ENST00000568558 TRIM37O94972 964 aa21.43■■□□□ 1.02
CLN3-236ENST00000568558 NLRP6P59044 892 aa21.43■■□□□ 1.02
CLN3-236ENST00000568558 NUP188Q5SRE5 1749 aa21.43■■□□□ 1.02
CLN3-236ENST00000568558 CRB1P82279 1406 aa21.42■■□□□ 1.02
CLN3-236ENST00000568558 PDE3BQ13370 1112 aa21.42■■□□□ 1.02
CLN3-236ENST00000568558 NEUROD1Q13562 356 aa21.42■■□□□ 1.02
CLN3-236ENST00000568558 EZH2Q15910 746 aaKnown RBP21.42■■□□□ 1.02
CLN3-236ENST00000568558 MON2Q7Z3U7 1717 aa21.42■■□□□ 1.02
CLN3-236ENST00000568558 THRAP3Q9Y2W1 955 aaKnown RBP21.42■■□□□ 1.02
CLN3-236ENST00000568558 SBF2Q86WG5 1849 aa21.41■■□□□ 1.02
CLN3-236ENST00000568558 LRRC37A3O60309 1634 aa21.41■■□□□ 1.02
CLN3-236ENST00000568558 AATKQ6ZMQ8 1374 aa21.41■■□□□ 1.02
CLN3-236ENST00000568558 PEAK1Q9H792 1746 aa21.41■■□□□ 1.02
CLN3-236ENST00000568558 CAMKK2Q96RR4 588 aa21.4■■□□□ 1.02
CLN3-236ENST00000568558 PARD3Q8TEW0 1356 aa21.39■■□□□ 1.02
CLN3-236ENST00000568558 ZBTB7CA1YPR0 619 aa21.38■■□□□ 1.01
CLN3-236ENST00000568558 R3HDM1Q15032 1099 aaKnown RBP21.38■■□□□ 1.01
CLN3-236ENST00000568558 APBA3O96018 575 aa21.37■■□□□ 1.01
CLN3-236ENST00000568558 CPSF1Q10570 1443 aaKnown RBP21.37■■□□□ 1.01
CLN3-236ENST00000568558 TTC21BQ7Z4L5 1316 aa21.36■■□□□ 1.01
CLN3-236ENST00000568558 ZNF692Q9BU19 519 aaPredicted RBP21.36■■□□□ 1.01
CLN3-236ENST00000568558 USP54Q70EL1 1684 aa21.36■■□□□ 1.01
CLN3-236ENST00000568558 RGPD3A6NKT7 1758 aaPredicted RBP21.36■■□□□ 1.01
CLN3-236ENST00000568558 RGPD4Q7Z3J3 1758 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms