RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 CRYBG1Q9Y4K1 1723 aa24.46■■□□□ 1.51
CLN3-231ENST00000568422 PAK3O75914 559 aaPredicted RBP24.44■■□□□ 1.5
CLN3-231ENST00000568422 BLMP54132 1417 aaPredicted RBP24.44■■□□□ 1.5
CLN3-231ENST00000568422 ZRANB1Q9UGI0 708 aa24.43■■□□□ 1.5
CLN3-231ENST00000568422 CDK19Q9BWU1 502 aa24.42■■□□□ 1.5
CLN3-231ENST00000568422 BTG4Q9NY30 223 aa24.42■■□□□ 1.5
CLN3-231ENST00000568422 TOPAZ1Q8N9V7 1692 aa24.42■■□□□ 1.5
CLN3-231ENST00000568422 CCDC61Q9Y6R9 512 aa24.39■■□□□ 1.49
CLN3-231ENST00000568422 POLR3AO14802 1390 aaPredicted RBP24.39■■□□□ 1.49
CLN3-231ENST00000568422 KRT27Q7Z3Y8 459 aa24.38■■□□□ 1.49
CLN3-231ENST00000568422 SF3B2Q13435 895 aaKnown RBP24.37■■□□□ 1.49
CLN3-231ENST00000568422 PLEKHG3A1L390 1219 aa24.36■■□□□ 1.49
CLN3-231ENST00000568422 NBPF1Q3BBV0 1214 aa24.36■■□□□ 1.49
CLN3-231ENST00000568422 ACEP12821 1306 aa24.35■■□□□ 1.49
CLN3-231ENST00000568422 PHRF1Q9P1Y6 1649 aaKnown RBP24.35■■□□□ 1.49
CLN3-231ENST00000568422 PRDM11Q9NQV5 511 aa24.35■■□□□ 1.49
CLN3-231ENST00000568422 NBPF8Q3BBV2 869 aa24.34■■□□□ 1.49
CLN3-231ENST00000568422 A0A0G2JS52 829 aa24.33■■□□□ 1.49
CLN3-231ENST00000568422 MYT1Q01538 1121 aa24.33■■□□□ 1.49
CLN3-231ENST00000568422 FAM98CQ17RN3 349 aaKnown RBP24.33■■□□□ 1.49
CLN3-231ENST00000568422 SPATA31A5Q5VU36 1347 aa24.33■■□□□ 1.48
CLN3-231ENST00000568422 SPATA31A7Q8IWB4 1347 aa24.33■■□□□ 1.48
CLN3-231ENST00000568422 SRCAPQ6ZRS2 3230 aa24.32■■□□□ 1.48
CLN3-231ENST00000568422 CENPJQ9HC77 1338 aaPredicted RBP24.32■■□□□ 1.48
CLN3-231ENST00000568422 QRICH2Q9H0J4 1663 aa24.3■■□□□ 1.48
CLN3-231ENST00000568422 KIAA0232Q92628 1395 aa24.3■■□□□ 1.48
CLN3-231ENST00000568422 THSD7AQ9UPZ6 1657 aa24.28■■□□□ 1.48
CLN3-231ENST00000568422 SRPK2P78362 688 aaKnown RBP24.28■■□□□ 1.48
CLN3-231ENST00000568422 BRD4O60885 1362 aaPredicted RBP24.28■■□□□ 1.48
CLN3-231ENST00000568422 DEFB132Q7Z7B7 95 aa24.27■■□□□ 1.48
CLN3-231ENST00000568422 ABTB2Q8N961 1025 aa24.27■■□□□ 1.48
CLN3-231ENST00000568422 PPIP5K1Q6PFW1 1433 aa24.27■■□□□ 1.48
CLN3-231ENST00000568422 L3MBTL2Q969R5 705 aa24.26■■□□□ 1.47
CLN3-231ENST00000568422 RGPD1P0DJD0 1748 aa24.25■■□□□ 1.47
CLN3-231ENST00000568422 ZC3H6P61129 1189 aaKnown RBP24.25■■□□□ 1.47
CLN3-231ENST00000568422 NUTM2GQ5VZR2 741 aa24.25■■□□□ 1.47
CLN3-231ENST00000568422 SPATA31A1Q5TZJ5 1347 aa24.25■■□□□ 1.47
CLN3-231ENST00000568422 NRKQ7Z2Y5 1582 aa24.25■■□□□ 1.47
CLN3-231ENST00000568422 TRPM1Q7Z4N2 1603 aa24.24■■□□□ 1.47
CLN3-231ENST00000568422 CHRNA2Q15822 529 aa24.24■■□□□ 1.47
CLN3-231ENST00000568422 BAG6P46379 1132 aa24.23■■□□□ 1.47
CLN3-231ENST00000568422 CPDO75976 1380 aa24.22■■□□□ 1.47
CLN3-231ENST00000568422 USP19O94966 1318 aa24.22■■□□□ 1.47
CLN3-231ENST00000568422 NLRP13Q86W25 1043 aa24.22■■□□□ 1.47
CLN3-231ENST00000568422 CABP2Q9NPB3 220 aa24.22■■□□□ 1.47
CLN3-231ENST00000568422 STRN4Q9NRL3 753 aa24.21■■□□□ 1.47
CLN3-231ENST00000568422 EVA1CP58658 441 aa24.2■■□□□ 1.46
CLN3-231ENST00000568422 LMO7Q8WWI1 1683 aa24.19■■□□□ 1.46
CLN3-231ENST00000568422 SSH2Q76I76 1423 aa24.18■■□□□ 1.46
CLN3-231ENST00000568422 EVC2Q86UK5 1308 aa24.18■■□□□ 1.46
CLN3-231ENST00000568422 CAMTA1Q9Y6Y1 1673 aa24.18■■□□□ 1.46
CLN3-231ENST00000568422 GCP02774 474 aa24.17■■□□□ 1.46
CLN3-231ENST00000568422 BARGINQ6ZT62 677 aa24.17■■□□□ 1.46
CLN3-231ENST00000568422 SIN3AQ96ST3 1273 aa24.17■■□□□ 1.46
CLN3-231ENST00000568422 CABP1Q9NZU7 370 aa24.17■■□□□ 1.46
CLN3-231ENST00000568422 USP6P35125 1406 aa24.17■■□□□ 1.46
CLN3-231ENST00000568422 TNS1Q9HBL0 1735 aaKnown RBP24.15■■□□□ 1.46
CLN3-231ENST00000568422 ROCK2O75116 1388 aaKnown RBP24.15■■□□□ 1.46
CLN3-231ENST00000568422 DISP2A7MBM2 1401 aa24.14■■□□□ 1.45
CLN3-231ENST00000568422 NEUROD1Q13562 356 aa24.14■■□□□ 1.45
CLN3-231ENST00000568422 FAM182BQ5T319 152 aa24.14■■□□□ 1.45
CLN3-231ENST00000568422 FAM196AQ6ZSG2 479 aa24.14■■□□□ 1.45
CLN3-231ENST00000568422 USP35Q9P2H5 1018 aa24.13■■□□□ 1.45
CLN3-231ENST00000568422 THRAP3Q9Y2W1 955 aaKnown RBP24.13■■□□□ 1.45
CLN3-231ENST00000568422 TCP11L2Q8N4U5 519 aa24.12■■□□□ 1.45
CLN3-231ENST00000568422 NLRP6P59044 892 aa24.11■■□□□ 1.45
CLN3-231ENST00000568422 LARP1Q6PKG0 1096 aaKnown RBP24.11■■□□□ 1.45
CLN3-231ENST00000568422 ZNF692Q9BU19 519 aaPredicted RBP24.11■■□□□ 1.45
CLN3-231ENST00000568422 SLIT3O75094 1523 aa24.1■■□□□ 1.45
CLN3-231ENST00000568422 PDE3BQ13370 1112 aa24.1■■□□□ 1.45
CLN3-231ENST00000568422 AKAP12Q02952 1782 aa24.1■■□□□ 1.45
CLN3-231ENST00000568422 LRP5O75197 1615 aa24.1■■□□□ 1.45
CLN3-231ENST00000568422 PIK3C2AO00443 1686 aa24.09■■□□□ 1.45
CLN3-231ENST00000568422 COL5A2P05997 1499 aaPredicted RBP24.09■■□□□ 1.45
CLN3-231ENST00000568422 EN1Q05925 392 aaPredicted RBP24.09■■□□□ 1.45
CLN3-231ENST00000568422 AATKQ6ZMQ8 1374 aa24.07■■□□□ 1.44
CLN3-231ENST00000568422 PARP4Q9UKK3 1724 aaKnown RBP24.07■■□□□ 1.44
CLN3-231ENST00000568422 CRB1P82279 1406 aa24.06■■□□□ 1.44
CLN3-231ENST00000568422 PARD3Q8TEW0 1356 aa24.05■■□□□ 1.44
CLN3-231ENST00000568422 TRIM37O94972 964 aa24.05■■□□□ 1.44
CLN3-231ENST00000568422 C11orf95C9JLR9 678 aaPredicted RBP24.04■■□□□ 1.44
CLN3-231ENST00000568422 TTC21AQ8NDW8 1320 aa24.03■■□□□ 1.44
CLN3-231ENST00000568422 COL18A1P39060 1754 aa24.03■■□□□ 1.44
CLN3-231ENST00000568422 SBNO2Q9Y2G9 1366 aa24.03■■□□□ 1.44
CLN3-231ENST00000568422 PSDA5PKW4 1024 aaPredicted RBP24.02■■□□□ 1.44
CLN3-231ENST00000568422 KCNH5Q8NCM2 988 aa24.02■■□□□ 1.44
CLN3-231ENST00000568422 TTC21BQ7Z4L5 1316 aa24.02■■□□□ 1.44
CLN3-231ENST00000568422 CPSF1Q10570 1443 aaKnown RBP24.01■■□□□ 1.43
CLN3-231ENST00000568422 APBA3O96018 575 aa24.01■■□□□ 1.43
CLN3-231ENST00000568422 CAMKK2Q96RR4 588 aa24.01■■□□□ 1.43
CLN3-231ENST00000568422 ZBTB7CA1YPR0 619 aa24■■□□□ 1.43
CLN3-231ENST00000568422 EZH2Q15910 746 aaKnown RBP24■■□□□ 1.43
CLN3-231ENST00000568422 MON2Q7Z3U7 1717 aa23.98■■□□□ 1.43
CLN3-231ENST00000568422 KTN1Q86UP2 1357 aaKnown RBP23.98■■□□□ 1.43
CLN3-231ENST00000568422 RREB1Q92766 1687 aa23.97■■□□□ 1.43
CLN3-231ENST00000568422 CARD11Q9BXL7 1154 aa23.97■■□□□ 1.43
CLN3-231ENST00000568422 WNK3Q9BYP7 1800 aa23.96■■□□□ 1.43
CLN3-231ENST00000568422 RGPD5Q99666 1765 aa23.96■■□□□ 1.43
CLN3-231ENST00000568422 WDR17Q8IZU2 1322 aa23.96■■□□□ 1.43
CLN3-231ENST00000568422 R3HDM1Q15032 1099 aaKnown RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms