RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MYOM1P52179 1685 aa13.83□□□□□ -0.2
CLK3-220ENST00000567992 PUS7Q96PZ0 661 aaKnown RBP13.82□□□□□ -0.2
CLK3-220ENST00000567992 PLCH1Q4KWH8 1693 aa13.82□□□□□ -0.2
CLK3-220ENST00000567992 MEX3CQ5U5Q3 659 aaKnown RBP13.81□□□□□ -0.2
CLK3-220ENST00000567992 ILDR2Q71H61 639 aa13.81□□□□□ -0.2
CLK3-220ENST00000567992 BRD4O60885 1362 aaPredicted RBP13.81□□□□□ -0.2
CLK3-220ENST00000567992 USP54Q70EL1 1684 aa13.8□□□□□ -0.2
CLK3-220ENST00000567992 ADAMTS2O95450 1211 aa13.8□□□□□ -0.2
CLK3-220ENST00000567992 CABLES1Q8TDN4 633 aa13.8□□□□□ -0.2
CLK3-220ENST00000567992 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.8□□□□□ -0.2
CLK3-220ENST00000567992 POTEAQ6S8J7 498 aa13.79□□□□□ -0.2
CLK3-220ENST00000567992 C8orf37Q96NL8 207 aa13.79□□□□□ -0.2
CLK3-220ENST00000567992 AFF2P51816 1311 aa13.79□□□□□ -0.2
CLK3-220ENST00000567992 NRAPQ86VF7 1730 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 NWD2Q9ULI1 1742 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 PAK3O75914 559 aaPredicted RBP13.78□□□□□ -0.2
CLK3-220ENST00000567992 LMOD2Q6P5Q4 547 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 A0A1W2PP64 1363 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 NINLQ9Y2I6 1382 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 SLIT3O75094 1523 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 SLIT2O94813 1529 aa13.78□□□□□ -0.2
CLK3-220ENST00000567992 SLC24A1O60721 1099 aa13.77□□□□□ -0.21
CLK3-220ENST00000567992 USP19O94966 1318 aa13.77□□□□□ -0.21
CLK3-220ENST00000567992 TMF1P82094 1093 aa13.77□□□□□ -0.21
CLK3-220ENST00000567992 COL14A1Q05707 1796 aaKnown RBP13.77□□□□□ -0.21
CLK3-220ENST00000567992 BCL9LQ86UU0 1499 aa13.77□□□□□ -0.21
CLK3-220ENST00000567992 SLC12A5Q9H2X9 1139 aa13.77□□□□□ -0.21
CLK3-220ENST00000567992 KTN1Q86UP2 1357 aaKnown RBP13.76□□□□□ -0.21
CLK3-220ENST00000567992 HSPA5P11021 654 aaKnown RBP13.76□□□□□ -0.21
CLK3-220ENST00000567992 FNBP4Q8N3X1 1017 aaPredicted RBP13.76□□□□□ -0.21
CLK3-220ENST00000567992 TTC21BQ7Z4L5 1316 aa13.75□□□□□ -0.21
CLK3-220ENST00000567992 PLEKHG5O94827 1062 aa13.75□□□□□ -0.21
CLK3-220ENST00000567992 EIF4G2P78344 907 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLK3-220ENST00000567992 NUTM2GQ5VZR2 741 aa13.75□□□□□ -0.21
CLK3-220ENST00000567992 ZNF692Q9BU19 519 aaPredicted RBP13.75□□□□□ -0.21
CLK3-220ENST00000567992 ATRNO75882 1429 aa13.74□□□□□ -0.21
CLK3-220ENST00000567992 EDC4Q6P2E9 1401 aaKnown RBP13.74□□□□□ -0.21
CLK3-220ENST00000567992 ZNF772Q68DY9 489 aaPredicted RBP13.74□□□□□ -0.21
CLK3-220ENST00000567992 ABTB2Q8N961 1025 aa13.74□□□□□ -0.21
CLK3-220ENST00000567992 TMC1Q8TDI8 760 aa13.74□□□□□ -0.21
CLK3-220ENST00000567992 NGLY1Q96IV0 654 aa13.74□□□□□ -0.21
CLK3-220ENST00000567992 LMO7Q8WWI1 1683 aa13.74□□□□□ -0.21
CLK3-220ENST00000567992 ANKRD36BQ8N2N9 1353 aa13.73□□□□□ -0.21
CLK3-220ENST00000567992 TTC21AQ8NDW8 1320 aa13.73□□□□□ -0.21
CLK3-220ENST00000567992 NFAT5O94916 1531 aa13.73□□□□□ -0.21
CLK3-220ENST00000567992 USP31Q70CQ4 1352 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 KIAA0232Q92628 1395 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 GLI3P10071 1580 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 FAM83GA6ND36 823 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 HAP1P54257 671 aaPredicted RBP13.71□□□□□ -0.21
CLK3-220ENST00000567992 CDCA8Q53HL2 280 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 TERF2IPQ9NYB0 399 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 USP21Q9UK80 565 aa13.71□□□□□ -0.21
CLK3-220ENST00000567992 COL18A1P39060 1754 aa13.71□□□□□ -0.22
CLK3-220ENST00000567992 CPDO75976 1380 aa13.71□□□□□ -0.22
CLK3-220ENST00000567992 KIF20BQ96Q89 1820 aa13.7□□□□□ -0.22
CLK3-220ENST00000567992 HDGFL2Q7Z4V5 671 aaPredicted RBP13.7□□□□□ -0.22
CLK3-220ENST00000567992 OVOS2A0A0J9YW53 1432 aa13.7□□□□□ -0.22
CLK3-220ENST00000567992 OVOS2Q6IE36 1432 aa13.7□□□□□ -0.22
CLK3-220ENST00000567992 CDK12Q9NYV4 1490 aaPredicted RBP13.69□□□□□ -0.22
CLK3-220ENST00000567992 C11orf95C9JLR9 678 aaPredicted RBP13.69□□□□□ -0.22
CLK3-220ENST00000567992 NLRP13Q86W25 1043 aa13.69□□□□□ -0.22
CLK3-220ENST00000567992 NME9Q86XW9 330 aa13.69□□□□□ -0.22
CLK3-220ENST00000567992 RGS12O14924 1447 aa13.68□□□□□ -0.22
CLK3-220ENST00000567992 NLRP6P59044 892 aa13.68□□□□□ -0.22
CLK3-220ENST00000567992 UNC5CLQ8IV45 518 aa13.68□□□□□ -0.22
CLK3-220ENST00000567992 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.68□□□□□ -0.22
CLK3-220ENST00000567992 QTRT2Q9H974 415 aaKnown RBP13.68□□□□□ -0.22
CLK3-220ENST00000567992 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
CLK3-220ENST00000567992 CAMTA1Q9Y6Y1 1673 aa13.68□□□□□ -0.22
CLK3-220ENST00000567992 GCP02774 474 aa13.67□□□□□ -0.22
CLK3-220ENST00000567992 PRDM11Q9NQV5 511 aa13.67□□□□□ -0.22
CLK3-220ENST00000567992 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
CLK3-220ENST00000567992 LTN1O94822 1766 aa13.67□□□□□ -0.22
CLK3-220ENST00000567992 ZC3H6P61129 1189 aaKnown RBP13.66□□□□□ -0.22
CLK3-220ENST00000567992 ABCC6O95255 1503 aa13.65□□□□□ -0.22
CLK3-220ENST00000567992 RXRBP28702 533 aa13.65□□□□□ -0.22
CLK3-220ENST00000567992 RBM6P78332 1123 aaKnown RBP13.65□□□□□ -0.22
CLK3-220ENST00000567992 CHRNA2Q15822 529 aa13.65□□□□□ -0.22
CLK3-220ENST00000567992 BTG4Q9NY30 223 aa13.65□□□□□ -0.22
CLK3-220ENST00000567992 RGPD5Q99666 1765 aa13.65□□□□□ -0.22
CLK3-220ENST00000567992 NSD3Q9BZ95 1437 aa13.64□□□□□ -0.23
CLK3-220ENST00000567992 COL5A2P05997 1499 aaPredicted RBP13.64□□□□□ -0.23
CLK3-220ENST00000567992 VPS72Q15906 364 aa13.64□□□□□ -0.23
CLK3-220ENST00000567992 CARD14Q9BXL6 1004 aa13.64□□□□□ -0.23
CLK3-220ENST00000567992 ANKRD26Q9UPS8 1709 aa13.64□□□□□ -0.23
CLK3-220ENST00000567992 KIF7Q2M1P5 1343 aa13.64□□□□□ -0.23
CLK3-220ENST00000567992 AATKQ6ZMQ8 1374 aa13.63□□□□□ -0.23
CLK3-220ENST00000567992 GJD4Q96KN9 370 aaPredicted RBP13.63□□□□□ -0.23
CLK3-220ENST00000567992 THSD7AQ9UPZ6 1657 aa13.63□□□□□ -0.23
CLK3-220ENST00000567992 ARHGEF25Q86VW2 580 aa13.62□□□□□ -0.23
CLK3-220ENST00000567992 KCNH5Q8NCM2 988 aa13.62□□□□□ -0.23
CLK3-220ENST00000567992 EP400Q96L91 3159 aa13.62□□□□□ -0.23
CLK3-220ENST00000567992 BRWD3Q6RI45 1802 aa13.62□□□□□ -0.23
CLK3-220ENST00000567992 SOCS7O14512 581 aa13.61□□□□□ -0.23
CLK3-220ENST00000567992 POLR3GLQ9BT43 218 aa13.61□□□□□ -0.23
CLK3-220ENST00000567992 WNK3Q9BYP7 1800 aa13.6□□□□□ -0.23
CLK3-220ENST00000567992 FYB1O15117 783 aa13.6□□□□□ -0.23
CLK3-220ENST00000567992 SOX12O15370 315 aa13.6□□□□□ -0.23
CLK3-220ENST00000567992 SPATA31A5Q5VU36 1347 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms