RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 CCDC61Q9Y6R9 512 aa26.83■■□□□ 1.89
LINC01238-205ENST00000567549 BLMP54132 1417 aaPredicted RBP26.82■■□□□ 1.88
LINC01238-205ENST00000567549 A0A0G2JS52 829 aa26.81■■□□□ 1.88
LINC01238-205ENST00000567549 ONECUT3O60422 494 aaPredicted RBP26.81■■□□□ 1.88
LINC01238-205ENST00000567549 MYT1Q01538 1121 aa26.81■■□□□ 1.88
LINC01238-205ENST00000567549 BTG4Q9NY30 223 aa26.8■■□□□ 1.88
LINC01238-205ENST00000567549 PRDM11Q9NQV5 511 aa26.79■■□□□ 1.88
LINC01238-205ENST00000567549 KRT27Q7Z3Y8 459 aa26.78■■□□□ 1.88
LINC01238-205ENST00000567549 BRWD3Q6RI45 1802 aa26.77■■□□□ 1.88
LINC01238-205ENST00000567549 POLR3AO14802 1390 aaPredicted RBP26.77■■□□□ 1.88
LINC01238-205ENST00000567549 CENPJQ9HC77 1338 aaPredicted RBP26.77■■□□□ 1.88
LINC01238-205ENST00000567549 NRAPQ86VF7 1730 aa26.76■■□□□ 1.88
LINC01238-205ENST00000567549 TOPAZ1Q8N9V7 1692 aa26.76■■□□□ 1.87
LINC01238-205ENST00000567549 EP400Q96L91 3159 aa26.76■■□□□ 1.87
LINC01238-205ENST00000567549 BRD4O60885 1362 aaPredicted RBP26.74■■□□□ 1.87
LINC01238-205ENST00000567549 CRYBG1Q9Y4K1 1723 aa26.74■■□□□ 1.87
LINC01238-205ENST00000567549 PLEKHG3A1L390 1219 aa26.74■■□□□ 1.87
LINC01238-205ENST00000567549 SRPK2P78362 688 aaKnown RBP26.74■■□□□ 1.87
LINC01238-205ENST00000567549 ACEP12821 1306 aa26.73■■□□□ 1.87
LINC01238-205ENST00000567549 NBPF8Q3BBV2 869 aa26.72■■□□□ 1.87
LINC01238-205ENST00000567549 NBPF1Q3BBV0 1214 aa26.71■■□□□ 1.87
LINC01238-205ENST00000567549 FAM98CQ17RN3 349 aaKnown RBP26.7■■□□□ 1.86
LINC01238-205ENST00000567549 PHRF1Q9P1Y6 1649 aaKnown RBP26.69■■□□□ 1.86
LINC01238-205ENST00000567549 SPATA31A5Q5VU36 1347 aa26.68■■□□□ 1.86
LINC01238-205ENST00000567549 SPATA31A7Q8IWB4 1347 aa26.68■■□□□ 1.86
LINC01238-205ENST00000567549 ABTB2Q8N961 1025 aa26.68■■□□□ 1.86
LINC01238-205ENST00000567549 QRICH2Q9H0J4 1663 aa26.68■■□□□ 1.86
LINC01238-205ENST00000567549 KIAA0232Q92628 1395 aa26.68■■□□□ 1.86
LINC01238-205ENST00000567549 PPIP5K1Q6PFW1 1433 aa26.67■■□□□ 1.86
LINC01238-205ENST00000567549 NLRP13Q86W25 1043 aa26.67■■□□□ 1.86
LINC01238-205ENST00000567549 L3MBTL2Q969R5 705 aa26.66■■□□□ 1.86
LINC01238-205ENST00000567549 BAG6P46379 1132 aa26.65■■□□□ 1.86
LINC01238-205ENST00000567549 EVC2Q86UK5 1308 aa26.65■■□□□ 1.86
LINC01238-205ENST00000567549 EVA1CP58658 441 aa26.63■■□□□ 1.85
LINC01238-205ENST00000567549 ZC3H6P61129 1189 aaKnown RBP26.62■■□□□ 1.85
LINC01238-205ENST00000567549 ROCK2O75116 1388 aaKnown RBP26.61■■□□□ 1.85
LINC01238-205ENST00000567549 STRN4Q9NRL3 753 aa26.61■■□□□ 1.85
LINC01238-205ENST00000567549 TRPM1Q7Z4N2 1603 aa26.61■■□□□ 1.85
LINC01238-205ENST00000567549 CPDO75976 1380 aa26.6■■□□□ 1.85
LINC01238-205ENST00000567549 NUTM2GQ5VZR2 741 aa26.6■■□□□ 1.85
LINC01238-205ENST00000567549 CABP2Q9NPB3 220 aa26.6■■□□□ 1.85
LINC01238-205ENST00000567549 SPATA31A1Q5TZJ5 1347 aa26.6■■□□□ 1.85
LINC01238-205ENST00000567549 USP19O94966 1318 aa26.59■■□□□ 1.85
LINC01238-205ENST00000567549 RGPD1P0DJD0 1748 aa26.59■■□□□ 1.85
LINC01238-205ENST00000567549 NRKQ7Z2Y5 1582 aa26.58■■□□□ 1.85
LINC01238-205ENST00000567549 THSD7AQ9UPZ6 1657 aa26.58■■□□□ 1.85
LINC01238-205ENST00000567549 NEUROD1Q13562 356 aa26.58■■□□□ 1.85
LINC01238-205ENST00000567549 CHRNA2Q15822 529 aa26.58■■□□□ 1.85
LINC01238-205ENST00000567549 DEFB132Q7Z7B7 95 aa26.56■■□□□ 1.84
LINC01238-205ENST00000567549 ZNF692Q9BU19 519 aaPredicted RBP26.55■■□□□ 1.84
LINC01238-205ENST00000567549 USP6P35125 1406 aa26.55■■□□□ 1.84
LINC01238-205ENST00000567549 SSH2Q76I76 1423 aa26.55■■□□□ 1.84
LINC01238-205ENST00000567549 GCP02774 474 aa26.54■■□□□ 1.84
LINC01238-205ENST00000567549 BARGINQ6ZT62 677 aa26.54■■□□□ 1.84
LINC01238-205ENST00000567549 SIN3AQ96ST3 1273 aa26.54■■□□□ 1.84
LINC01238-205ENST00000567549 CABP1Q9NZU7 370 aa26.54■■□□□ 1.84
LINC01238-205ENST00000567549 THRAP3Q9Y2W1 955 aaKnown RBP26.54■■□□□ 1.84
LINC01238-205ENST00000567549 C11orf95C9JLR9 678 aaPredicted RBP26.53■■□□□ 1.84
LINC01238-205ENST00000567549 FAM196AQ6ZSG2 479 aa26.53■■□□□ 1.84
LINC01238-205ENST00000567549 NLRP6P59044 892 aa26.51■■□□□ 1.83
LINC01238-205ENST00000567549 PDE3BQ13370 1112 aa26.51■■□□□ 1.83
LINC01238-205ENST00000567549 TCP11L2Q8N4U5 519 aa26.5■■□□□ 1.83
LINC01238-205ENST00000567549 USP35Q9P2H5 1018 aa26.49■■□□□ 1.83
LINC01238-205ENST00000567549 LMO7Q8WWI1 1683 aa26.48■■□□□ 1.83
LINC01238-205ENST00000567549 DISP2A7MBM2 1401 aa26.48■■□□□ 1.83
LINC01238-205ENST00000567549 CAMTA1Q9Y6Y1 1673 aa26.47■■□□□ 1.83
LINC01238-205ENST00000567549 KCNH5Q8NCM2 988 aa26.46■■□□□ 1.83
LINC01238-205ENST00000567549 TTC21AQ8NDW8 1320 aa26.45■■□□□ 1.83
LINC01238-205ENST00000567549 AATKQ6ZMQ8 1374 aa26.45■■□□□ 1.82
LINC01238-205ENST00000567549 SBNO2Q9Y2G9 1366 aa26.45■■□□□ 1.82
LINC01238-205ENST00000567549 SLIT3O75094 1523 aa26.44■■□□□ 1.82
LINC01238-205ENST00000567549 LARP1Q6PKG0 1096 aaKnown RBP26.44■■□□□ 1.82
LINC01238-205ENST00000567549 PARD3Q8TEW0 1356 aa26.44■■□□□ 1.82
LINC01238-205ENST00000567549 TONSLQ96HA7 1378 aa26.44■■□□□ 1.82
LINC01238-205ENST00000567549 CRB1P82279 1406 aa26.43■■□□□ 1.82
LINC01238-205ENST00000567549 COL5A2P05997 1499 aaPredicted RBP26.42■■□□□ 1.82
LINC01238-205ENST00000567549 ZBTB7CA1YPR0 619 aa26.42■■□□□ 1.82
LINC01238-205ENST00000567549 CARD11Q9BXL7 1154 aa26.42■■□□□ 1.82
LINC01238-205ENST00000567549 EN1Q05925 392 aaPredicted RBP26.41■■□□□ 1.82
LINC01238-205ENST00000567549 FAM182BQ5T319 152 aa26.41■■□□□ 1.82
LINC01238-205ENST00000567549 AKAP12Q02952 1782 aa26.41■■□□□ 1.82
LINC01238-205ENST00000567549 TNS1Q9HBL0 1735 aaKnown RBP26.4■■□□□ 1.82
LINC01238-205ENST00000567549 PIK3C2AO00443 1686 aa26.39■■□□□ 1.82
LINC01238-205ENST00000567549 SLC24A1O60721 1099 aa26.39■■□□□ 1.82
LINC01238-205ENST00000567549 TTC21BQ7Z4L5 1316 aa26.39■■□□□ 1.81
LINC01238-205ENST00000567549 KTN1Q86UP2 1357 aaKnown RBP26.38■■□□□ 1.81
LINC01238-205ENST00000567549 TRIM37O94972 964 aa26.38■■□□□ 1.81
LINC01238-205ENST00000567549 CDCA7Q9BWT1 371 aaPredicted RBP26.38■■□□□ 1.81
LINC01238-205ENST00000567549 PARP4Q9UKK3 1724 aaKnown RBP26.38■■□□□ 1.81
LINC01238-205ENST00000567549 LRP5O75197 1615 aa26.37■■□□□ 1.81
LINC01238-205ENST00000567549 APBA3O96018 575 aa26.36■■□□□ 1.81
LINC01238-205ENST00000567549 TOM1L2Q6ZVM7 507 aa26.36■■□□□ 1.81
LINC01238-205ENST00000567549 CPSF1Q10570 1443 aaKnown RBP26.35■■□□□ 1.81
LINC01238-205ENST00000567549 SRCAPQ6ZRS2 3230 aa26.35■■□□□ 1.81
LINC01238-205ENST00000567549 HDGFL2Q7Z4V5 671 aaPredicted RBP26.33■■□□□ 1.81
LINC01238-205ENST00000567549 WDR17Q8IZU2 1322 aa26.33■■□□□ 1.81
LINC01238-205ENST00000567549 ABCC6O95255 1503 aa26.32■■□□□ 1.8
LINC01238-205ENST00000567549 OVOS2A0A0G2JMS6 1433 aa26.31■■□□□ 1.8
LINC01238-205ENST00000567549 OVOS2A0A0J9YW53 1432 aa26.31■■□□□ 1.8
LINC01238-205ENST00000567549 OVOS2Q6IE36 1432 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms