RNA–Protein interactions for RNA: ENST00000565556.5

CNEP1R1-206, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

TSL 1 (best) BASIC

Gene CNEP1R1, Length 1,707 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-206ENST00000565556 ERICH6BQ5W0A0 696 aa12.6□□□□□ -0.39
CNEP1R1-206ENST00000565556 FYB1O15117 783 aa12.59□□□□□ -0.39
CNEP1R1-206ENST00000565556 PPP2R1AP30153 589 aa12.59□□□□□ -0.39
CNEP1R1-206ENST00000565556 CCDC184Q52MB2 194 aa12.59□□□□□ -0.39
CNEP1R1-206ENST00000565556 ATF3P18847 181 aa12.59□□□□□ -0.39
CNEP1R1-206ENST00000565556 NGDNQ8NEJ9 315 aaKnown RBP12.59□□□□□ -0.39
CNEP1R1-206ENST00000565556 MSH6P52701 1360 aa12.58□□□□□ -0.4
CNEP1R1-206ENST00000565556 USP6P35125 1406 aa12.58□□□□□ -0.4
CNEP1R1-206ENST00000565556 ZNF335Q9H4Z2 1342 aaPredicted RBP12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 CADPS2Q86UW7 1296 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 PMFBP1Q8TBY8 1022 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 PHF8Q9UPP1 1060 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 NRKQ7Z2Y5 1582 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 LRRC7Q96NW7 1537 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 XIRP1Q702N8 1843 aaKnown RBP12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 FANCIQ9NVI1 1328 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 GGNBP2Q9H3C7 697 aa12.57□□□□□ -0.4
CNEP1R1-206ENST00000565556 TTC21AQ8NDW8 1320 aa12.56□□□□□ -0.4
CNEP1R1-206ENST00000565556 ESCO1Q5FWF5 840 aa12.56□□□□□ -0.4
CNEP1R1-206ENST00000565556 TTC21BQ7Z4L5 1316 aa12.55□□□□□ -0.4
CNEP1R1-206ENST00000565556 PNISRQ8TF01 805 aaKnown RBP12.55□□□□□ -0.4
CNEP1R1-206ENST00000565556 C1orf167Q5SNV9 1468 aa12.55□□□□□ -0.4
CNEP1R1-206ENST00000565556 KIF1AQ12756 1690 aa12.55□□□□□ -0.4
CNEP1R1-206ENST00000565556 SSH2Q76I76 1423 aa12.55□□□□□ -0.4
CNEP1R1-206ENST00000565556 FAM9BQ8IZU0 186 aa12.54□□□□□ -0.4
CNEP1R1-206ENST00000565556 COG3Q96JB2 828 aa12.54□□□□□ -0.4
CNEP1R1-206ENST00000565556 MST1RQ04912 1400 aa12.53□□□□□ -0.4
CNEP1R1-206ENST00000565556 TNNT2P45379 298 aaPredicted RBP12.53□□□□□ -0.4
CNEP1R1-206ENST00000565556 NME9Q86XW9 330 aa12.53□□□□□ -0.4
CNEP1R1-206ENST00000565556 CFAP53Q96M91 514 aa12.52□□□□□ -0.41
CNEP1R1-206ENST00000565556 PSME1Q06323 249 aa12.51□□□□□ -0.41
CNEP1R1-206ENST00000565556 PIAS4Q8N2W9 510 aaPredicted RBP12.51□□□□□ -0.41
CNEP1R1-206ENST00000565556 INSRP06213 1382 aa12.51□□□□□ -0.41
CNEP1R1-206ENST00000565556 ORAI2Q96SN7 254 aa12.51□□□□□ -0.41
CNEP1R1-206ENST00000565556 PPP4R2Q9NY27 417 aa12.51□□□□□ -0.41
CNEP1R1-206ENST00000565556 AATKQ6ZMQ8 1374 aa12.5□□□□□ -0.41
CNEP1R1-206ENST00000565556 USP31Q70CQ4 1352 aa12.5□□□□□ -0.41
CNEP1R1-206ENST00000565556 MTHFSP49914 203 aa12.5□□□□□ -0.41
CNEP1R1-206ENST00000565556 OVOS2A0A0J9YW53 1432 aa12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 OVOS2Q6IE36 1432 aa12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 WDR43Q15061 677 aaKnown RBP eCLIP12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 BCL11AQ9H165 835 aa12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 MAP2P11137 1827 aaKnown RBP12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 USP54Q70EL1 1684 aa12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 ZBED9Q6R2W3 1325 aa12.49□□□□□ -0.41
CNEP1R1-206ENST00000565556 KCNA4P22459 653 aa12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 PIK3C2AO00443 1686 aa12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 FOXO3O43524 673 aa12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 PAK3O75914 559 aaPredicted RBP12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 ERICH6Q7L0X2 663 aa12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 ZRANB1Q9UGI0 708 aa12.48□□□□□ -0.41
CNEP1R1-206ENST00000565556 MSH5O43196 834 aa12.47□□□□□ -0.41
CNEP1R1-206ENST00000565556 ABTB2Q8N961 1025 aa12.47□□□□□ -0.41
CNEP1R1-206ENST00000565556 SLAIN2Q9P270 581 aa12.47□□□□□ -0.41
CNEP1R1-206ENST00000565556 LTBP4Q8N2S1 1624 aa12.46□□□□□ -0.41
CNEP1R1-206ENST00000565556 NLRP6P59044 892 aa12.46□□□□□ -0.41
CNEP1R1-206ENST00000565556 IRX6P78412 446 aaPredicted RBP12.46□□□□□ -0.41
CNEP1R1-206ENST00000565556 KRT28Q7Z3Y7 464 aa12.46□□□□□ -0.41
CNEP1R1-206ENST00000565556 NPHP3Q7Z494 1330 aa12.46□□□□□ -0.41
CNEP1R1-206ENST00000565556 POLKQ9UBT6 870 aa12.45□□□□□ -0.42
CNEP1R1-206ENST00000565556 SMG6Q86US8 1419 aaKnown RBP12.45□□□□□ -0.42
CNEP1R1-206ENST00000565556 TRPM3Q9HCF6 1732 aaPredicted RBP12.45□□□□□ -0.42
CNEP1R1-206ENST00000565556 NUDCQ9Y266 331 aa12.45□□□□□ -0.42
CNEP1R1-206ENST00000565556 PNPLA6Q8IY17 1366 aa12.45□□□□□ -0.42
CNEP1R1-206ENST00000565556 ADAMTS8Q9UP79 889 aa12.44□□□□□ -0.42
CNEP1R1-206ENST00000565556 SHPRHQ149N8 1683 aa12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 CDK12Q9NYV4 1490 aaPredicted RBP12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 BLMP54132 1417 aaPredicted RBP12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 SBNO1A3KN83 1393 aa12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 BRINP3Q76B58 766 aa12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 MARF1Q9Y4F3 1742 aaKnown RBP12.43□□□□□ -0.42
CNEP1R1-206ENST00000565556 COL3A1P02461 1466 aaPredicted RBP12.42□□□□□ -0.42
CNEP1R1-206ENST00000565556 PPM1GO15355 546 aaPredicted RBP12.42□□□□□ -0.42
CNEP1R1-206ENST00000565556 DIAPH1O60610 1272 aaKnown RBP12.42□□□□□ -0.42
CNEP1R1-206ENST00000565556 ALS2Q96Q42 1657 aa12.41□□□□□ -0.42
CNEP1R1-206ENST00000565556 XPCQ01831 940 aaPredicted RBP12.41□□□□□ -0.42
CNEP1R1-206ENST00000565556 KCNH5Q8NCM2 988 aa12.41□□□□□ -0.42
CNEP1R1-206ENST00000565556 EMILIN1Q9Y6C2 1016 aa12.41□□□□□ -0.42
CNEP1R1-206ENST00000565556 KIF24Q5T7B8 1368 aa12.41□□□□□ -0.42
CNEP1R1-206ENST00000565556 FBLN1P23142 703 aa12.4□□□□□ -0.42
CNEP1R1-206ENST00000565556 RRS1Q15050 365 aaKnown RBP12.4□□□□□ -0.42
CNEP1R1-206ENST00000565556 NUTM2GQ5VZR2 741 aa12.4□□□□□ -0.42
CNEP1R1-206ENST00000565556 PXDNQ92626 1479 aa12.4□□□□□ -0.42
CNEP1R1-206ENST00000565556 LMOD2Q6P5Q4 547 aa12.39□□□□□ -0.43
CNEP1R1-206ENST00000565556 NGEFQ8N5V2 710 aa12.39□□□□□ -0.43
CNEP1R1-206ENST00000565556 PNNQ9H307 717 aaKnown RBP12.39□□□□□ -0.43
CNEP1R1-206ENST00000565556 TNS3Q68CZ2 1445 aa12.39□□□□□ -0.43
CNEP1R1-206ENST00000565556 ARHGEF10O15013 1369 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 MAP3K19Q56UN5 1328 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 U2AF1L5P0DN76 240 aaPredicted RBP12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 U2AF1Q01081 240 aaKnown RBP eCLIP12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 FLT4P35916 1363 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 SLIT3O75094 1523 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 NHSL1Q5SYE7 1610 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 USP19O94966 1318 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 SOS2Q07890 1332 aaPredicted RBP12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 SPATA31A3Q5VYP0 1347 aa12.38□□□□□ -0.43
CNEP1R1-206ENST00000565556 U2SURPO15042 1029 aaKnown RBP12.37□□□□□ -0.43
CNEP1R1-206ENST00000565556 SOX12O15370 315 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms