RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 PLEKHG3A1L390 1219 aa22.57■■□□□ 1.2
CDH3-204ENST00000565453 NEUROD1Q13562 356 aa22.57■■□□□ 1.2
CDH3-204ENST00000565453 CCDC61Q9Y6R9 512 aa22.57■■□□□ 1.2
CDH3-204ENST00000565453 QRICH2Q9H0J4 1663 aa22.56■■□□□ 1.2
CDH3-204ENST00000565453 VPS72Q15906 364 aa22.56■■□□□ 1.2
CDH3-204ENST00000565453 ACEP12821 1306 aa22.56■■□□□ 1.2
CDH3-204ENST00000565453 NRAPQ86VF7 1730 aa22.55■■□□□ 1.2
CDH3-204ENST00000565453 PAK3O75914 559 aaPredicted RBP22.54■■□□□ 1.2
CDH3-204ENST00000565453 NBPF8Q3BBV2 869 aa22.54■■□□□ 1.2
CDH3-204ENST00000565453 COL14A1Q05707 1796 aaKnown RBP22.53■■□□□ 1.2
CDH3-204ENST00000565453 PHRF1Q9P1Y6 1649 aaKnown RBP22.51■■□□□ 1.19
CDH3-204ENST00000565453 PPIP5K1Q6PFW1 1433 aa22.5■■□□□ 1.19
CDH3-204ENST00000565453 SRPK2P78362 688 aaKnown RBP22.5■■□□□ 1.19
CDH3-204ENST00000565453 CABP2Q9NPB3 220 aa22.5■■□□□ 1.19
CDH3-204ENST00000565453 ROCK2O75116 1388 aaKnown RBP22.5■■□□□ 1.19
CDH3-204ENST00000565453 ONECUT3O60422 494 aaPredicted RBP22.49■■□□□ 1.19
CDH3-204ENST00000565453 BTG4Q9NY30 223 aa22.49■■□□□ 1.19
CDH3-204ENST00000565453 BRWD3Q6RI45 1802 aa22.48■■□□□ 1.19
CDH3-204ENST00000565453 SEPT12Q8IYM1 358 aa22.47■■□□□ 1.19
CDH3-204ENST00000565453 NUTM2GQ5VZR2 741 aa22.45■■□□□ 1.18
CDH3-204ENST00000565453 CCDC9Q9Y3X0 531 aaKnown RBP22.45■■□□□ 1.18
CDH3-204ENST00000565453 KIAA0232Q92628 1395 aa22.45■■□□□ 1.18
CDH3-204ENST00000565453 PRDM11Q9NQV5 511 aa22.44■■□□□ 1.18
CDH3-204ENST00000565453 NRKQ7Z2Y5 1582 aa22.43■■□□□ 1.18
CDH3-204ENST00000565453 BRD4O60885 1362 aaPredicted RBP22.43■■□□□ 1.18
CDH3-204ENST00000565453 USP19O94966 1318 aa22.43■■□□□ 1.18
CDH3-204ENST00000565453 EVC2Q86UK5 1308 aa22.43■■□□□ 1.18
CDH3-204ENST00000565453 TRIM26Q12899 539 aaPredicted RBP22.42■■□□□ 1.18
CDH3-204ENST00000565453 CABP1Q9NZU7 370 aa22.42■■□□□ 1.18
CDH3-204ENST00000565453 CCDC125Q86Z20 511 aa22.41■■□□□ 1.18
CDH3-204ENST00000565453 ABTB2Q8N961 1025 aa22.41■■□□□ 1.18
CDH3-204ENST00000565453 USP6P35125 1406 aa22.4■■□□□ 1.18
CDH3-204ENST00000565453 SPATA31A5Q5VU36 1347 aa22.4■■□□□ 1.18
CDH3-204ENST00000565453 SPATA31A7Q8IWB4 1347 aa22.4■■□□□ 1.18
CDH3-204ENST00000565453 ZC3H6P61129 1189 aaKnown RBP22.4■■□□□ 1.18
CDH3-204ENST00000565453 CHRNA2Q15822 529 aa22.4■■□□□ 1.18
CDH3-204ENST00000565453 SSH2Q76I76 1423 aa22.4■■□□□ 1.18
CDH3-204ENST00000565453 FAM98CQ17RN3 349 aaKnown RBP22.38■■□□□ 1.17
CDH3-204ENST00000565453 CPDO75976 1380 aa22.38■■□□□ 1.17
CDH3-204ENST00000565453 TONSLQ96HA7 1378 aa22.38■■□□□ 1.17
CDH3-204ENST00000565453 KRT27Q7Z3Y8 459 aa22.37■■□□□ 1.17
CDH3-204ENST00000565453 BLMP54132 1417 aaPredicted RBP22.37■■□□□ 1.17
CDH3-204ENST00000565453 SBNO2Q9Y2G9 1366 aa22.37■■□□□ 1.17
CDH3-204ENST00000565453 LMO7Q8WWI1 1683 aa22.36■■□□□ 1.17
CDH3-204ENST00000565453 THSD7AQ9UPZ6 1657 aa22.36■■□□□ 1.17
CDH3-204ENST00000565453 NLRP13Q86W25 1043 aa22.36■■□□□ 1.17
CDH3-204ENST00000565453 EP400Q96L91 3159 aa22.35■■□□□ 1.17
CDH3-204ENST00000565453 CAMTA1Q9Y6Y1 1673 aa22.34■■□□□ 1.17
CDH3-204ENST00000565453 GCP02774 474 aa22.34■■□□□ 1.17
CDH3-204ENST00000565453 CARD11Q9BXL7 1154 aa22.34■■□□□ 1.17
CDH3-204ENST00000565453 SLIT3O75094 1523 aa22.34■■□□□ 1.17
CDH3-204ENST00000565453 SPATA31A1Q5TZJ5 1347 aa22.33■■□□□ 1.17
CDH3-204ENST00000565453 PIK3C2AO00443 1686 aa22.33■■□□□ 1.17
CDH3-204ENST00000565453 AKAP12Q02952 1782 aa22.33■■□□□ 1.17
CDH3-204ENST00000565453 CPSF1Q10570 1443 aaKnown RBP22.31■■□□□ 1.16
CDH3-204ENST00000565453 A0A0G2JS52 829 aa22.31■■□□□ 1.16
CDH3-204ENST00000565453 MYT1Q01538 1121 aa22.31■■□□□ 1.16
CDH3-204ENST00000565453 STRN4Q9NRL3 753 aa22.31■■□□□ 1.16
CDH3-204ENST00000565453 ZNF692Q9BU19 519 aaPredicted RBP22.3■■□□□ 1.16
CDH3-204ENST00000565453 NLRP6P59044 892 aa22.29■■□□□ 1.16
CDH3-204ENST00000565453 TTC21BQ7Z4L5 1316 aa22.29■■□□□ 1.16
CDH3-204ENST00000565453 COL5A2P05997 1499 aaPredicted RBP22.27■■□□□ 1.16
CDH3-204ENST00000565453 EVA1CP58658 441 aa22.26■■□□□ 1.15
CDH3-204ENST00000565453 LARP1Q6PKG0 1096 aaKnown RBP22.26■■□□□ 1.15
CDH3-204ENST00000565453 DEFB132Q7Z7B7 95 aa22.26■■□□□ 1.15
CDH3-204ENST00000565453 MON2Q7Z3U7 1717 aa22.26■■□□□ 1.15
CDH3-204ENST00000565453 BARGINQ6ZT62 677 aa22.25■■□□□ 1.15
CDH3-204ENST00000565453 TTC21AQ8NDW8 1320 aa22.25■■□□□ 1.15
CDH3-204ENST00000565453 CD163L1Q9NR16 1453 aa22.24■■□□□ 1.15
CDH3-204ENST00000565453 COL18A1P39060 1754 aa22.24■■□□□ 1.15
CDH3-204ENST00000565453 AATKQ6ZMQ8 1374 aa22.24■■□□□ 1.15
CDH3-204ENST00000565453 KTN1Q86UP2 1357 aaKnown RBP22.24■■□□□ 1.15
CDH3-204ENST00000565453 SF3B2Q13435 895 aaKnown RBP22.23■■□□□ 1.15
CDH3-204ENST00000565453 FAM182BQ5T319 152 aa22.23■■□□□ 1.15
CDH3-204ENST00000565453 ZRANB1Q9UGI0 708 aa22.23■■□□□ 1.15
CDH3-204ENST00000565453 USP35Q9P2H5 1018 aa22.22■■□□□ 1.15
CDH3-204ENST00000565453 RGPD1P0DJD0 1748 aa22.2■■□□□ 1.14
CDH3-204ENST00000565453 TCP11L2Q8N4U5 519 aa22.2■■□□□ 1.14
CDH3-204ENST00000565453 ARHGEF25Q86VW2 580 aa22.19■■□□□ 1.14
CDH3-204ENST00000565453 PUS7Q96PZ0 661 aaKnown RBP22.19■■□□□ 1.14
CDH3-204ENST00000565453 TESK2Q96S53 571 aa22.19■■□□□ 1.14
CDH3-204ENST00000565453 THRAP3Q9Y2W1 955 aaKnown RBP22.19■■□□□ 1.14
CDH3-204ENST00000565453 CRB1P82279 1406 aa22.19■■□□□ 1.14
CDH3-204ENST00000565453 NFAT5O94916 1531 aa22.19■■□□□ 1.14
CDH3-204ENST00000565453 USP54Q70EL1 1684 aa22.19■■□□□ 1.14
CDH3-204ENST00000565453 ZBTB7CA1YPR0 619 aa22.18■■□□□ 1.14
CDH3-204ENST00000565453 KCNH5Q8NCM2 988 aa22.18■■□□□ 1.14
CDH3-204ENST00000565453 TNS1Q9HBL0 1735 aaKnown RBP22.17■■□□□ 1.14
CDH3-204ENST00000565453 USP31Q70CQ4 1352 aa22.17■■□□□ 1.14
CDH3-204ENST00000565453 SLC12A5Q9H2X9 1139 aa22.17■■□□□ 1.14
CDH3-204ENST00000565453 AXIN2Q9Y2T1 843 aa22.17■■□□□ 1.14
CDH3-204ENST00000565453 ST20-MTHFSA0A0A6YYL1 179 aa22.16■■□□□ 1.14
CDH3-204ENST00000565453 BAG6P46379 1132 aa22.16■■□□□ 1.14
CDH3-204ENST00000565453 PARP4Q9UKK3 1724 aaKnown RBP22.16■■□□□ 1.14
CDH3-204ENST00000565453 DISP2A7MBM2 1401 aa22.15■■□□□ 1.14
CDH3-204ENST00000565453 TMC1Q8TDI8 760 aa22.15■■□□□ 1.14
CDH3-204ENST00000565453 FAM196AQ6ZSG2 479 aa22.14■■□□□ 1.13
CDH3-204ENST00000565453 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.14■■□□□ 1.13
CDH3-204ENST00000565453 A0A1W2PP64 1363 aa22.13■■□□□ 1.13
CDH3-204ENST00000565453 HDGFL2Q7Z4V5 671 aaPredicted RBP22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms