RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 ADH1CP00326 375 aa10.34□□□□□ -0.75
CHD9-215ENST00000565442 VSIG8P0DPA2 414 aa10.34□□□□□ -0.75
CHD9-215ENST00000565442 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
CHD9-215ENST00000565442 WDR4P57081 412 aaKnown RBP10.33□□□□□ -0.76
CHD9-215ENST00000565442 PRR7Q8TB68 274 aa10.33□□□□□ -0.76
CHD9-215ENST00000565442 SPIRE2Q8WWL2 714 aa10.33□□□□□ -0.76
CHD9-215ENST00000565442 KRTAP4-6Q9BYQ5 205 aa10.33□□□□□ -0.76
CHD9-215ENST00000565442 SOBPA7XYQ1 873 aa10.32□□□□□ -0.76
CHD9-215ENST00000565442 NDUFV2P19404 249 aa10.32□□□□□ -0.76
CHD9-215ENST00000565442 DESI1Q6ICB0 168 aa10.31□□□□□ -0.76
CHD9-215ENST00000565442 MOXD2PA6NHM9 499 aa10.3□□□□□ -0.76
CHD9-215ENST00000565442 KLF16Q9BXK1 252 aaPredicted RBP10.3□□□□□ -0.76
CHD9-215ENST00000565442 SPDYE5A6NIY4 337 aa10.29□□□□□ -0.76
CHD9-215ENST00000565442 SSTR3P32745 418 aaPredicted RBP10.29□□□□□ -0.76
CHD9-215ENST00000565442 MTMR2Q13614 643 aa10.29□□□□□ -0.76
CHD9-215ENST00000565442 FAM174AQ8TBP5 190 aa10.28□□□□□ -0.76
CHD9-215ENST00000565442 CTHP32929 405 aa10.25□□□□□ -0.77
CHD9-215ENST00000565442 CDK15Q96Q40 435 aa10.25□□□□□ -0.77
CHD9-215ENST00000565442 MAN1A2O60476 641 aa10.24□□□□□ -0.77
CHD9-215ENST00000565442 ZIC2O95409 532 aaPredicted RBP10.24□□□□□ -0.77
CHD9-215ENST00000565442 ZFAND3Q9H8U3 227 aa10.24□□□□□ -0.77
CHD9-215ENST00000565442 PRKCSHP14314 528 aaPredicted RBP10.23□□□□□ -0.77
CHD9-215ENST00000565442 ARID5BQ14865 1188 aa10.23□□□□□ -0.77
CHD9-215ENST00000565442 C6orf118Q5T5N4 469 aa10.23□□□□□ -0.77
CHD9-215ENST00000565442 LYPD8Q6UX82 237 aa10.23□□□□□ -0.77
CHD9-215ENST00000565442 FOXJ1Q92949 421 aa10.23□□□□□ -0.77
CHD9-215ENST00000565442 ITPKCQ96DU7 683 aa10.23□□□□□ -0.77
CHD9-215ENST00000565442 TTLL12Q14166 644 aaPredicted RBP10.22□□□□□ -0.77
CHD9-215ENST00000565442 PPFIA3O75145 1194 aa10.21□□□□□ -0.77
CHD9-215ENST00000565442 KCNMA1Q12791 1236 aa10.21□□□□□ -0.77
CHD9-215ENST00000565442 NR5A1Q13285 461 aa10.21□□□□□ -0.77
CHD9-215ENST00000565442 NR3C2P08235 984 aa10.2□□□□□ -0.78
CHD9-215ENST00000565442 SUZ12Q15022 739 aaKnown RBP10.2□□□□□ -0.78
CHD9-215ENST00000565442 MAP10Q9P2G4 905 aa10.2□□□□□ -0.78
CHD9-215ENST00000565442 F12P00748 615 aaPredicted RBP10.19□□□□□ -0.78
CHD9-215ENST00000565442 GJA5P36382 358 aa10.19□□□□□ -0.78
CHD9-215ENST00000565442 CFAP99D6REC4 459 aa10.18□□□□□ -0.78
CHD9-215ENST00000565442 UPP2O95045 317 aa10.18□□□□□ -0.78
CHD9-215ENST00000565442 BMP2P12643 396 aa10.18□□□□□ -0.78
CHD9-215ENST00000565442 TPRNQ4KMQ1 711 aa10.18□□□□□ -0.78
CHD9-215ENST00000565442 GIGYF2Q6Y7W6 1299 aaKnown RBP10.18□□□□□ -0.78
CHD9-215ENST00000565442 LINC00528Q8N1L1 170 aa10.18□□□□□ -0.78
CHD9-215ENST00000565442 GSK3AP49840 483 aa10.17□□□□□ -0.78
CHD9-215ENST00000565442 AMHR2Q16671 573 aa10.17□□□□□ -0.78
CHD9-215ENST00000565442 C4orf48Q5BLP8 95 aa10.17□□□□□ -0.78
CHD9-215ENST00000565442 RSBN1LQ6PCB5 846 aaPredicted RBP10.17□□□□□ -0.78
CHD9-215ENST00000565442 MEIOBQ8N635 442 aa10.17□□□□□ -0.78
CHD9-215ENST00000565442 BEGAINQ9BUH8 593 aa10.17□□□□□ -0.78
CHD9-215ENST00000565442 GRM5P41594 1212 aa10.16□□□□□ -0.78
CHD9-215ENST00000565442 AGERQ15109 404 aa10.16□□□□□ -0.78
CHD9-215ENST00000565442 KCTD17Q8N5Z5 321 aa10.16□□□□□ -0.78
CHD9-215ENST00000565442 DIXDC1Q155Q3 683 aa10.15□□□□□ -0.78
CHD9-215ENST00000565442 TBC1D2Q9BYX2 928 aa10.15□□□□□ -0.78
CHD9-215ENST00000565442 DNMT3LQ9UJW3 386 aa10.15□□□□□ -0.78
CHD9-215ENST00000565442 SOS2Q07890 1332 aaPredicted RBP10.14□□□□□ -0.79
CHD9-215ENST00000565442 SPTLC1O15269 473 aa10.14□□□□□ -0.79
CHD9-215ENST00000565442 BPHLQ86WA6 291 aaPredicted RBP10.14□□□□□ -0.79
CHD9-215ENST00000565442 ZBTB3Q9H5J0 574 aa10.14□□□□□ -0.79
CHD9-215ENST00000565442 PCDHB15Q9Y5E8 787 aa10.14□□□□□ -0.79
CHD9-215ENST00000565442 HRCP23327 699 aa10.13□□□□□ -0.79
CHD9-215ENST00000565442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.13□□□□□ -0.79
CHD9-215ENST00000565442 KRT76Q01546 638 aa10.11□□□□□ -0.79
CHD9-215ENST00000565442 BARGINQ6ZT62 677 aa10.11□□□□□ -0.79
CHD9-215ENST00000565442 TMEM151AQ8N4L1 468 aa10.11□□□□□ -0.79
CHD9-215ENST00000565442 FSHRP23945 695 aa10.1□□□□□ -0.79
CHD9-215ENST00000565442 C1QTNF2Q9BXJ5 285 aa10.1□□□□□ -0.79
CHD9-215ENST00000565442 RNF225M0QZC1 329 aaPredicted RBP10.09□□□□□ -0.79
CHD9-215ENST00000565442 PER1O15534 1290 aaPredicted RBP10.09□□□□□ -0.79
CHD9-215ENST00000565442 GDF11O95390 407 aa10.09□□□□□ -0.79
CHD9-215ENST00000565442 RASSF7Q02833 373 aa10.09□□□□□ -0.79
CHD9-215ENST00000565442 PRPF38BQ5VTL8 546 aaKnown RBP10.09□□□□□ -0.79
CHD9-215ENST00000565442 GPR161Q8N6U8 529 aaKnown RBP10.09□□□□□ -0.79
CHD9-215ENST00000565442 CNTNAP3BQ96NU0 1288 aa10.09□□□□□ -0.79
CHD9-215ENST00000565442 TSEN34Q9BSV6 310 aaKnown RBP10.09□□□□□ -0.79
CHD9-215ENST00000565442 CNTNAP3Q9BZ76 1288 aa10.09□□□□□ -0.79
CHD9-215ENST00000565442 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.08□□□□□ -0.8
CHD9-215ENST00000565442 CABLES1Q8TDN4 633 aa10.08□□□□□ -0.8
CHD9-215ENST00000565442 MAP4K5Q9Y4K4 846 aa10.08□□□□□ -0.8
CHD9-215ENST00000565442 SH3RF1Q7Z6J0 888 aa10.07□□□□□ -0.8
CHD9-215ENST00000565442 ADAMTS8Q9UP79 889 aa10.07□□□□□ -0.8
CHD9-215ENST00000565442 EMILIN1Q9Y6C2 1016 aa10.07□□□□□ -0.8
CHD9-215ENST00000565442 TTLL8A6PVC2 850 aa10.06□□□□□ -0.8
CHD9-215ENST00000565442 ZMYND10O75800 440 aa10.06□□□□□ -0.8
CHD9-215ENST00000565442 VASH1Q7L8A9 365 aaPredicted RBP10.06□□□□□ -0.8
CHD9-215ENST00000565442 RIC3Q7Z5B4 369 aa10.06□□□□□ -0.8
CHD9-215ENST00000565442 ARMC2Q8NEN0 867 aa10.06□□□□□ -0.8
CHD9-215ENST00000565442 PTSQ03393 145 aa10.05□□□□□ -0.8
CHD9-215ENST00000565442 NBPF14Q5TI25 921 aa10.05□□□□□ -0.8
CHD9-215ENST00000565442 PARP9Q8IXQ6 854 aa10.05□□□□□ -0.8
CHD9-215ENST00000565442 TRMT44Q8IYL2 757 aaKnown RBP10.05□□□□□ -0.8
CHD9-215ENST00000565442 TSC1Q92574 1164 aa10.05□□□□□ -0.8
CHD9-215ENST00000565442 CSPP1Q1MSJ5 1256 aa10.04□□□□□ -0.8
CHD9-215ENST00000565442 CCDC116Q8IYX3 515 aa10.04□□□□□ -0.8
CHD9-215ENST00000565442 NANOS1Q8WY41 292 aaKnown RBP10.03□□□□□ -0.8
CHD9-215ENST00000565442 COL25A1Q9BXS0 654 aaPredicted RBP10.03□□□□□ -0.8
CHD9-215ENST00000565442 MAGEB6P1A0A0J9YX57 407 aa10.02□□□□□ -0.81
CHD9-215ENST00000565442 SH3BP5LQ7L8J4 393 aa10.02□□□□□ -0.81
CHD9-215ENST00000565442 ZNF385CQ66K41 422 aaPredicted RBP10.01□□□□□ -0.81
CHD9-215ENST00000565442 FIGNL2A6NMB9 653 aa10□□□□□ -0.81
CHD9-215ENST00000565442 SVOPQ8N4V2 548 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms