RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PSDA5PKW4 1024 aaPredicted RBP24.55■■□□□ 1.52
CLN3-217ENST00000565354 DLC1Q96QB1 1528 aa24.55■■□□□ 1.52
CLN3-217ENST00000565354 ROCK2O75116 1388 aaKnown RBP24.54■■□□□ 1.52
CLN3-217ENST00000565354 SAFB2Q14151 953 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLN3-217ENST00000565354 FAM98CQ17RN3 349 aaKnown RBP24.54■■□□□ 1.52
CLN3-217ENST00000565354 PRAM1Q96QH2 718 aa24.54■■□□□ 1.52
CLN3-217ENST00000565354 RGPD1P0DJD0 1748 aa24.54■■□□□ 1.52
CLN3-217ENST00000565354 TRPM3Q9HCF6 1732 aaPredicted RBP24.54■■□□□ 1.52
CLN3-217ENST00000565354 ANKARQ7Z5J8 1434 aa24.53■■□□□ 1.52
CLN3-217ENST00000565354 NBPF8Q3BBV2 869 aa24.53■■□□□ 1.52
CLN3-217ENST00000565354 COL14A1Q05707 1796 aaKnown RBP24.52■■□□□ 1.52
CLN3-217ENST00000565354 PMFBP1Q8TBY8 1022 aa24.52■■□□□ 1.52
CLN3-217ENST00000565354 BTG4Q9NY30 223 aa24.52■■□□□ 1.52
CLN3-217ENST00000565354 ALS2Q96Q42 1657 aa24.51■■□□□ 1.51
CLN3-217ENST00000565354 ADGRB2O60241 1585 aa24.5■■□□□ 1.51
CLN3-217ENST00000565354 ARHGEF28Q8N1W1 1705 aaKnown RBP24.47■■□□□ 1.51
CLN3-217ENST00000565354 EN1Q05925 392 aaPredicted RBP24.47■■□□□ 1.51
CLN3-217ENST00000565354 GPRASP1Q5JY77 1395 aa24.45■■□□□ 1.5
CLN3-217ENST00000565354 TNS1Q9HBL0 1735 aaKnown RBP24.45■■□□□ 1.5
CLN3-217ENST00000565354 CRYBG1Q9Y4K1 1723 aa24.45■■□□□ 1.5
CLN3-217ENST00000565354 CARD11Q9BXL7 1154 aa24.45■■□□□ 1.5
CLN3-217ENST00000565354 THSD7AQ9UPZ6 1657 aa24.45■■□□□ 1.5
CLN3-217ENST00000565354 SPATA31A5Q5VU36 1347 aa24.44■■□□□ 1.5
CLN3-217ENST00000565354 SPATA31A7Q8IWB4 1347 aa24.44■■□□□ 1.5
CLN3-217ENST00000565354 FAM182BQ5T319 152 aa24.44■■□□□ 1.5
CLN3-217ENST00000565354 DISP2A7MBM2 1401 aa24.44■■□□□ 1.5
CLN3-217ENST00000565354 MINK1Q8N4C8 1332 aaPredicted RBP24.43■■□□□ 1.5
CLN3-217ENST00000565354 EIF3AQ14152 1382 aaKnown RBP24.42■■□□□ 1.5
CLN3-217ENST00000565354 R3HDM1Q15032 1099 aaKnown RBP24.41■■□□□ 1.5
CLN3-217ENST00000565354 HIRIP3Q9BW71 556 aaPredicted RBP24.4■■□□□ 1.5
CLN3-217ENST00000565354 TULP4Q9NRJ4 1543 aa24.4■■□□□ 1.5
CLN3-217ENST00000565354 PRR36Q9H6K5 1346 aa24.39■■□□□ 1.5
CLN3-217ENST00000565354 CENPJQ9HC77 1338 aaPredicted RBP24.39■■□□□ 1.5
CLN3-217ENST00000565354 PRDM11Q9NQV5 511 aa24.38■■□□□ 1.49
CLN3-217ENST00000565354 EZH2Q15910 746 aaKnown RBP24.36■■□□□ 1.49
CLN3-217ENST00000565354 NGDNQ8NEJ9 315 aaKnown RBP24.35■■□□□ 1.49
CLN3-217ENST00000565354 QRICH2Q9H0J4 1663 aa24.34■■□□□ 1.49
CLN3-217ENST00000565354 WASLO00401 505 aaPredicted RBP24.34■■□□□ 1.49
CLN3-217ENST00000565354 PAK3O75914 559 aaPredicted RBP24.34■■□□□ 1.49
CLN3-217ENST00000565354 SPATA31A1Q5TZJ5 1347 aa24.34■■□□□ 1.49
CLN3-217ENST00000565354 CAMKK2Q96RR4 588 aa24.33■■□□□ 1.49
CLN3-217ENST00000565354 ITSN1Q15811 1721 aa24.32■■□□□ 1.48
CLN3-217ENST00000565354 FAM196AQ6ZSG2 479 aa24.32■■□□□ 1.48
CLN3-217ENST00000565354 TRIM37O94972 964 aa24.31■■□□□ 1.48
CLN3-217ENST00000565354 PHRF1Q9P1Y6 1649 aaKnown RBP24.31■■□□□ 1.48
CLN3-217ENST00000565354 KIAA0232Q92628 1395 aa24.3■■□□□ 1.48
CLN3-217ENST00000565354 PARD3Q8TEW0 1356 aa24.29■■□□□ 1.48
CLN3-217ENST00000565354 RREB1Q92766 1687 aa24.27■■□□□ 1.48
CLN3-217ENST00000565354 CHRNA2Q15822 529 aa24.27■■□□□ 1.48
CLN3-217ENST00000565354 STRN4Q9NRL3 753 aa24.27■■□□□ 1.48
CLN3-217ENST00000565354 ATP7BP35670 1465 aa24.26■■□□□ 1.47
CLN3-217ENST00000565354 APBA3O96018 575 aa24.26■■□□□ 1.47
CLN3-217ENST00000565354 CDK19Q9BWU1 502 aa24.26■■□□□ 1.47
CLN3-217ENST00000565354 SRPK2P78362 688 aaKnown RBP24.25■■□□□ 1.47
CLN3-217ENST00000565354 NUP188Q5SRE5 1749 aa24.24■■□□□ 1.47
CLN3-217ENST00000565354 EVC2Q86UK5 1308 aa24.24■■□□□ 1.47
CLN3-217ENST00000565354 USP47Q96K76 1375 aa24.24■■□□□ 1.47
CLN3-217ENST00000565354 ZC3H6P61129 1189 aaKnown RBP24.23■■□□□ 1.47
CLN3-217ENST00000565354 NUDT16Q96DE0 195 aaKnown RBP24.23■■□□□ 1.47
CLN3-217ENST00000565354 BARGINQ6ZT62 677 aa24.22■■□□□ 1.47
CLN3-217ENST00000565354 USP35Q9P2H5 1018 aa24.22■■□□□ 1.47
CLN3-217ENST00000565354 SSH2Q76I76 1423 aa24.21■■□□□ 1.47
CLN3-217ENST00000565354 PDE3BQ13370 1112 aa24.21■■□□□ 1.47
CLN3-217ENST00000565354 ST20-MTHFSA0A0A6YYL1 179 aa24.2■■□□□ 1.46
CLN3-217ENST00000565354 NUTM2GQ5VZR2 741 aa24.2■■□□□ 1.46
CLN3-217ENST00000565354 EVA1CP58658 441 aa24.19■■□□□ 1.46
CLN3-217ENST00000565354 SBNO2Q9Y2G9 1366 aa24.18■■□□□ 1.46
CLN3-217ENST00000565354 TOPAZ1Q8N9V7 1692 aa24.18■■□□□ 1.46
CLN3-217ENST00000565354 CABP2Q9NPB3 220 aa24.18■■□□□ 1.46
CLN3-217ENST00000565354 CAMTA1Q9Y6Y1 1673 aa24.18■■□□□ 1.46
CLN3-217ENST00000565354 POLR3AO14802 1390 aaPredicted RBP24.17■■□□□ 1.46
CLN3-217ENST00000565354 NRKQ7Z2Y5 1582 aa24.17■■□□□ 1.46
CLN3-217ENST00000565354 NBPF14Q5TI25 921 aa24.17■■□□□ 1.46
CLN3-217ENST00000565354 LMO7Q8WWI1 1683 aa24.17■■□□□ 1.46
CLN3-217ENST00000565354 SLC24A1O60721 1099 aa24.16■■□□□ 1.46
CLN3-217ENST00000565354 YY1P25490 414 aa24.15■■□□□ 1.46
CLN3-217ENST00000565354 LARP1Q6PKG0 1096 aaKnown RBP24.15■■□□□ 1.46
CLN3-217ENST00000565354 ACEP12821 1306 aa24.14■■□□□ 1.46
CLN3-217ENST00000565354 TCP11L2Q8N4U5 519 aa24.14■■□□□ 1.45
CLN3-217ENST00000565354 CCDC61Q9Y6R9 512 aa24.14■■□□□ 1.45
CLN3-217ENST00000565354 CPDO75976 1380 aa24.14■■□□□ 1.45
CLN3-217ENST00000565354 EIF4G2P78344 907 aaKnown RBP eCLIP24.13■■□□□ 1.451e-9■■■■□ 22.4
CLN3-217ENST00000565354 PARP4Q9UKK3 1724 aaKnown RBP24.13■■□□□ 1.45
CLN3-217ENST00000565354 ABTB2Q8N961 1025 aa24.11■■□□□ 1.45
CLN3-217ENST00000565354 THRAP3Q9Y2W1 955 aaKnown RBP24.11■■□□□ 1.45
CLN3-217ENST00000565354 USP19O94966 1318 aa24.1■■□□□ 1.45
CLN3-217ENST00000565354 PPIP5K1Q6PFW1 1433 aa24.1■■□□□ 1.45
CLN3-217ENST00000565354 PLEKHG3A1L390 1219 aa24.1■■□□□ 1.45
CLN3-217ENST00000565354 TMF1P82094 1093 aa24.1■■□□□ 1.45
CLN3-217ENST00000565354 SPON1Q9HCB6 807 aa24.1■■□□□ 1.45
CLN3-217ENST00000565354 TESK2Q96S53 571 aa24.09■■□□□ 1.45
CLN3-217ENST00000565354 PPP1R1BQ9UD71 204 aaPredicted RBP24.08■■□□□ 1.45
CLN3-217ENST00000565354 RGPD3A6NKT7 1758 aaPredicted RBP24.07■■□□□ 1.44
CLN3-217ENST00000565354 RGPD4Q7Z3J3 1758 aa24.07■■□□□ 1.44
CLN3-217ENST00000565354 C11orf95C9JLR9 678 aaPredicted RBP24.07■■□□□ 1.44
CLN3-217ENST00000565354 KCNQ2O43526 872 aa24.07■■□□□ 1.44
CLN3-217ENST00000565354 HSPA5P11021 654 aaKnown RBP24.07■■□□□ 1.44
CLN3-217ENST00000565354 COL5A2P05997 1499 aaPredicted RBP24.07■■□□□ 1.44
CLN3-217ENST00000565354 NINLQ9Y2I6 1382 aa24.06■■□□□ 1.44
CLN3-217ENST00000565354 SBF2Q86WG5 1849 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms