RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 RPGRIP1LQ68CZ1 1315 aa20.47■□□□□ 0.87
LINC00554-201ENST00000564841 SYNMO15061 1565 aa20.47■□□□□ 0.87
LINC00554-201ENST00000564841 ERVK-7P63135 1459 aa20.46■□□□□ 0.87
LINC00554-201ENST00000564841 PIK3C2GO75747 1445 aa20.46■□□□□ 0.87
LINC00554-201ENST00000564841 DDX11L8A8MPP1 907 aa20.46■□□□□ 0.87
LINC00554-201ENST00000564841 PRAM1Q96QH2 718 aa20.45■□□□□ 0.87
LINC00554-201ENST00000564841 R3HCC1Q9Y3T6 440 aaKnown RBP20.45■□□□□ 0.87
LINC00554-201ENST00000564841 GLI2P10070 1586 aa20.45■□□□□ 0.86
LINC00554-201ENST00000564841 CEBPAP49715 358 aaPredicted RBP20.45■□□□□ 0.86
LINC00554-201ENST00000564841 HSCBQ8IWL3 235 aa20.45■□□□□ 0.86
LINC00554-201ENST00000564841 PMFBP1Q8TBY8 1022 aa20.44■□□□□ 0.86
LINC00554-201ENST00000564841 PRDM10Q9NQV6 1147 aa20.43■□□□□ 0.86
LINC00554-201ENST00000564841 CALD1Q05682 793 aaKnown RBP20.43■□□□□ 0.86
LINC00554-201ENST00000564841 WWC1Q8IX03 1113 aa20.43■□□□□ 0.86
LINC00554-201ENST00000564841 RARSP54136 660 aaKnown RBP20.42■□□□□ 0.86
LINC00554-201ENST00000564841 WAPLQ7Z5K2 1190 aa20.42■□□□□ 0.86
LINC00554-201ENST00000564841 MORC1Q86VD1 984 aa20.42■□□□□ 0.86
LINC00554-201ENST00000564841 ZBTB7CA1YPR0 619 aa20.41■□□□□ 0.86
LINC00554-201ENST00000564841 NASPP49321 788 aaPredicted RBP20.4■□□□□ 0.86
LINC00554-201ENST00000564841 OFD1O75665 1012 aa20.39■□□□□ 0.85
LINC00554-201ENST00000564841 EVC2Q86UK5 1308 aa20.39■□□□□ 0.85
LINC00554-201ENST00000564841 CD2BP2O95400 341 aaKnown RBP20.39■□□□□ 0.85
LINC00554-201ENST00000564841 XPCQ01831 940 aaPredicted RBP20.39■□□□□ 0.85
LINC00554-201ENST00000564841 ZSCAN30Q86W11 494 aa20.39■□□□□ 0.85
LINC00554-201ENST00000564841 ZHX1Q9UKY1 873 aaPredicted RBP20.38■□□□□ 0.85
LINC00554-201ENST00000564841 MYO5BQ9ULV0 1848 aa20.38■□□□□ 0.85
LINC00554-201ENST00000564841 NSD3Q9BZ95 1437 aa20.38■□□□□ 0.85
LINC00554-201ENST00000564841 RWDD1Q9H446 243 aaPredicted RBP20.38■□□□□ 0.85
LINC00554-201ENST00000564841 PPLO60437 1756 aa20.38■□□□□ 0.85
LINC00554-201ENST00000564841 DDIT3P35638 169 aa20.37■□□□□ 0.85
LINC00554-201ENST00000564841 NRXN1Q9ULB1 1477 aa20.37■□□□□ 0.85
LINC00554-201ENST00000564841 IFT172Q9UG01 1749 aa20.37■□□□□ 0.85
LINC00554-201ENST00000564841 MSNP26038 577 aaKnown RBP20.37■□□□□ 0.85
LINC00554-201ENST00000564841 HSP90AB1P08238 724 aaKnown RBP20.36■□□□□ 0.85
LINC00554-201ENST00000564841 ARHGAP31Q2M1Z3 1444 aa20.36■□□□□ 0.85
LINC00554-201ENST00000564841 ASXL1Q8IXJ9 1541 aa20.35■□□□□ 0.85
LINC00554-201ENST00000564841 KDM5AP29375 1690 aaKnown RBP20.35■□□□□ 0.85
LINC00554-201ENST00000564841 SLC24A1O60721 1099 aa20.35■□□□□ 0.85
LINC00554-201ENST00000564841 RBM42Q9BTD8 480 aaKnown RBP20.35■□□□□ 0.85
LINC00554-201ENST00000564841 SSFA2P28290 1259 aa20.35■□□□□ 0.85
LINC00554-201ENST00000564841 PIK3C2BO00750 1634 aa20.35■□□□□ 0.85
LINC00554-201ENST00000564841 NEXMIFQ5QGS0 1516 aa20.35■□□□□ 0.85
LINC00554-201ENST00000564841 NUTM2FA1L443 756 aa20.34■□□□□ 0.85
LINC00554-201ENST00000564841 GGNBP2Q9H3C7 697 aa20.34■□□□□ 0.85
LINC00554-201ENST00000564841 CCDC173Q0VFZ6 552 aa20.33■□□□□ 0.85
LINC00554-201ENST00000564841 TCP11L2Q8N4U5 519 aa20.33■□□□□ 0.85
LINC00554-201ENST00000564841 CLTCQ00610 1675 aaKnown RBP20.33■□□□□ 0.85
LINC00554-201ENST00000564841 ZMYM3Q14202 1370 aa20.33■□□□□ 0.85
LINC00554-201ENST00000564841 ADGRB1O14514 1584 aa20.33■□□□□ 0.84
LINC00554-201ENST00000564841 MTHFSP49914 203 aa20.33■□□□□ 0.84
LINC00554-201ENST00000564841 TXNDC2Q86VQ3 553 aa20.33■□□□□ 0.84
LINC00554-201ENST00000564841 KIAA1210Q9ULL0 1709 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 JARID2Q92833 1246 aaPredicted RBP20.32■□□□□ 0.84
LINC00554-201ENST00000564841 PREX1Q8TCU6 1659 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 ISY1Q9ULR0 285 aaKnown RBP20.32■□□□□ 0.84
LINC00554-201ENST00000564841 UQCRHLA0A096LP55 91 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 UQCRHP07919 91 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 RAB3GAP1Q15042 981 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 GBP4Q96PP9 640 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 PPP1R9BQ96SB3 815 aa20.32■□□□□ 0.84
LINC00554-201ENST00000564841 NCLP19338 710 aaKnown RBP20.31■□□□□ 0.84
LINC00554-201ENST00000564841 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.3■□□□□ 0.84
LINC00554-201ENST00000564841 DDX49Q9Y6V7 483 aaKnown RBP20.3■□□□□ 0.84
LINC00554-201ENST00000564841 TSR2Q969E8 191 aaKnown RBP20.3■□□□□ 0.84
LINC00554-201ENST00000564841 KIF13AQ9H1H9 1805 aa20.3■□□□□ 0.84
LINC00554-201ENST00000564841 FBLN1P23142 703 aa20.29■□□□□ 0.84
LINC00554-201ENST00000564841 CDK19Q9BWU1 502 aa20.29■□□□□ 0.84
LINC00554-201ENST00000564841 MYOM1P52179 1685 aa20.29■□□□□ 0.84
LINC00554-201ENST00000564841 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.29■□□□□ 0.84
LINC00554-201ENST00000564841 NEURL4Q96JN8 1562 aa20.29■□□□□ 0.84
LINC00554-201ENST00000564841 U2AF1L5P0DN76 240 aaPredicted RBP20.29■□□□□ 0.84
LINC00554-201ENST00000564841 U2AF1Q01081 240 aaKnown RBP eCLIP20.29■□□□□ 0.84
LINC00554-201ENST00000564841 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.29■□□□□ 0.84
LINC00554-201ENST00000564841 CABP1Q9NZU7 370 aa20.29■□□□□ 0.84
LINC00554-201ENST00000564841 AAMPQ13685 434 aa20.28■□□□□ 0.84
LINC00554-201ENST00000564841 QRICH2Q9H0J4 1663 aa20.28■□□□□ 0.84
LINC00554-201ENST00000564841 SMC5Q8IY18 1101 aa20.27■□□□□ 0.84
LINC00554-201ENST00000564841 U2SURPO15042 1029 aaKnown RBP20.27■□□□□ 0.84
LINC00554-201ENST00000564841 NCKAP5LQ9HCH0 1330 aa20.27■□□□□ 0.83
LINC00554-201ENST00000564841 MVPQ14764 893 aaKnown RBP20.27■□□□□ 0.83
LINC00554-201ENST00000564841 FTSJ3Q8IY81 847 aaKnown RBP20.27■□□□□ 0.83
LINC00554-201ENST00000564841 ANP32BQ92688 251 aaKnown RBP20.27■□□□□ 0.83
LINC00554-201ENST00000564841 LNPKQ9C0E8 428 aa20.26■□□□□ 0.83
LINC00554-201ENST00000564841 YTHDC2Q9H6S0 1430 aaKnown RBP20.26■□□□□ 0.83
LINC00554-201ENST00000564841 RIMS2Q9UQ26 1411 aa20.26■□□□□ 0.83
LINC00554-201ENST00000564841 GAS2L2Q8NHY3 880 aa20.26■□□□□ 0.83
LINC00554-201ENST00000564841 SLC26A8Q96RN1 970 aa20.26■□□□□ 0.83
LINC00554-201ENST00000564841 NCOA3Q9Y6Q9 1424 aa20.26■□□□□ 0.83
LINC00554-201ENST00000564841 TSC1Q92574 1164 aa20.25■□□□□ 0.83
LINC00554-201ENST00000564841 TMEM131LA2VDJ0 1609 aa20.25■□□□□ 0.83
LINC00554-201ENST00000564841 SBNO2Q9Y2G9 1366 aa20.25■□□□□ 0.83
LINC00554-201ENST00000564841 CAVIN1Q6NZI2 390 aaKnown RBP20.25■□□□□ 0.83
LINC00554-201ENST00000564841 CHAMP1Q96JM3 812 aa20.25■□□□□ 0.83
LINC00554-201ENST00000564841 KIF2CQ99661 725 aa20.25■□□□□ 0.83
LINC00554-201ENST00000564841 RBSNQ9H1K0 784 aa20.24■□□□□ 0.83
LINC00554-201ENST00000564841 ZC3H13Q5T200 1668 aaKnown RBP20.24■□□□□ 0.83
LINC00554-201ENST00000564841 SETBP1Q9Y6X0 1596 aa20.24■□□□□ 0.83
LINC00554-201ENST00000564841 SKOR2Q2VWA4 1001 aaPredicted RBP20.24■□□□□ 0.83
LINC00554-201ENST00000564841 NINLQ9Y2I6 1382 aa20.23■□□□□ 0.83
LINC00554-201ENST00000564841 ITPRIPQ8IWB1 547 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms