RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 J3QL48 77 aa10.54□□□□□ -0.72
CHD9-212ENST00000564641 ST8SIA5O15466 376 aa10.54□□□□□ -0.72
CHD9-212ENST00000564641 VARSP26640 1264 aaKnown RBP10.54□□□□□ -0.72
CHD9-212ENST00000564641 SKIV2LQ15477 1246 aaKnown RBP10.54□□□□□ -0.72
CHD9-212ENST00000564641 SIAH2O43255 324 aa10.53□□□□□ -0.72
CHD9-212ENST00000564641 ALDH1A1P00352 501 aa10.53□□□□□ -0.72
CHD9-212ENST00000564641 F12P00748 615 aaPredicted RBP10.53□□□□□ -0.72
CHD9-212ENST00000564641 SH3D19Q5HYK7 790 aa10.53□□□□□ -0.72
CHD9-212ENST00000564641 TSC1Q92574 1164 aa10.53□□□□□ -0.72
CHD9-212ENST00000564641 POLR3EQ9NVU0 708 aa10.53□□□□□ -0.72
CHD9-212ENST00000564641 PLEKHG3A1L390 1219 aa10.52□□□□□ -0.73
CHD9-212ENST00000564641 MPNDQ8N594 471 aa10.52□□□□□ -0.73
CHD9-212ENST00000564641 ARMC2Q8NEN0 867 aa10.52□□□□□ -0.73
CHD9-212ENST00000564641 GPBP1L1Q9HC44 474 aaPredicted RBP10.51□□□□□ -0.73
CHD9-212ENST00000564641 LINC01559Q495D7 138 aa10.5□□□□□ -0.73
CHD9-212ENST00000564641 WASF2Q9Y6W5 498 aa10.5□□□□□ -0.73
CHD9-212ENST00000564641 FAM117AQ9C073 453 aa10.49□□□□□ -0.73
CHD9-212ENST00000564641 MAP10Q9P2G4 905 aa10.49□□□□□ -0.73
CHD9-212ENST00000564641 PER1O15534 1290 aaPredicted RBP10.48□□□□□ -0.73
CHD9-212ENST00000564641 RTL5Q5HYW3 569 aaPredicted RBP10.48□□□□□ -0.73
CHD9-212ENST00000564641 HPS1Q92902 700 aa10.48□□□□□ -0.73
CHD9-212ENST00000564641 BPHLQ86WA6 291 aaPredicted RBP10.47□□□□□ -0.73
CHD9-212ENST00000564641 FAM174AQ8TBP5 190 aa10.47□□□□□ -0.73
CHD9-212ENST00000564641 NBPF14Q5TI25 921 aa10.46□□□□□ -0.73
CHD9-212ENST00000564641 POTECB2RU33 542 aa10.45□□□□□ -0.74
CHD9-212ENST00000564641 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.45□□□□□ -0.74
CHD9-212ENST00000564641 SENP2Q9HC62 589 aa10.45□□□□□ -0.74
CHD9-212ENST00000564641 ATP1B4Q9UN42 357 aaPredicted RBP10.45□□□□□ -0.74
CHD9-212ENST00000564641 AGERQ15109 404 aa10.44□□□□□ -0.74
CHD9-212ENST00000564641 PPP2R2DQ66LE6 453 aa10.44□□□□□ -0.74
CHD9-212ENST00000564641 GPKOWQ92917 476 aaPredicted RBP eCLIP10.44□□□□□ -0.74
CHD9-212ENST00000564641 GOPCQ9HD26 462 aa10.44□□□□□ -0.74
CHD9-212ENST00000564641 ATP13A2Q9NQ11 1180 aa10.44□□□□□ -0.74
CHD9-212ENST00000564641 DACH1Q9UI36 760 aa10.44□□□□□ -0.74
CHD9-212ENST00000564641 C11orf95C9JLR9 678 aaPredicted RBP10.42□□□□□ -0.74
CHD9-212ENST00000564641 ZNF775Q96BV0 537 aaPredicted RBP10.42□□□□□ -0.74
CHD9-212ENST00000564641 GMPR2Q9P2T1 348 aaKnown RBP10.42□□□□□ -0.74
CHD9-212ENST00000564641 KIFC2Q96AC6 838 aa10.41□□□□□ -0.74
CHD9-212ENST00000564641 CDK15Q96Q40 435 aa10.41□□□□□ -0.74
CHD9-212ENST00000564641 TLL2Q9Y6L7 1015 aa10.41□□□□□ -0.74
CHD9-212ENST00000564641 CTDSPL2Q05D32 466 aa10.4□□□□□ -0.74
CHD9-212ENST00000564641 PROCA1Q8NCQ7 364 aaPredicted RBP10.4□□□□□ -0.74
CHD9-212ENST00000564641 FOXJ1Q92949 421 aa10.4□□□□□ -0.74
CHD9-212ENST00000564641 CAPN5O15484 640 aaPredicted RBP10.39□□□□□ -0.75
CHD9-212ENST00000564641 ADH1CP00326 375 aa10.39□□□□□ -0.75
CHD9-212ENST00000564641 NNTQ13423 1086 aa10.38□□□□□ -0.75
CHD9-212ENST00000564641 NEUROD2Q15784 382 aa10.38□□□□□ -0.75
CHD9-212ENST00000564641 SH3RF1Q7Z6J0 888 aa10.38□□□□□ -0.75
CHD9-212ENST00000564641 TRIM47Q96LD4 638 aa10.38□□□□□ -0.75
CHD9-212ENST00000564641 NR5A1Q13285 461 aa10.37□□□□□ -0.75
CHD9-212ENST00000564641 ZC3H4Q9UPT8 1303 aaKnown RBP10.36□□□□□ -0.75
CHD9-212ENST00000564641 SH3BP5LQ7L8J4 393 aa10.36□□□□□ -0.75
CHD9-212ENST00000564641 PNMA1Q8ND90 353 aa10.36□□□□□ -0.75
CHD9-212ENST00000564641 PCMTD1Q96MG8 357 aaPredicted RBP10.36□□□□□ -0.75
CHD9-212ENST00000564641 ARID5BQ14865 1188 aa10.35□□□□□ -0.75
CHD9-212ENST00000564641 C4orf48Q5BLP8 95 aa10.35□□□□□ -0.75
CHD9-212ENST00000564641 PDXDC2PQ6P474 469 aa10.35□□□□□ -0.75
CHD9-212ENST00000564641 C1QTNF2Q9BXJ5 285 aa10.35□□□□□ -0.75
CHD9-212ENST00000564641 MAP4K5Q9Y4K4 846 aa10.35□□□□□ -0.75
CHD9-212ENST00000564641 AP1G2O75843 785 aa10.34□□□□□ -0.75
CHD9-212ENST00000564641 TRMT44Q8IYL2 757 aaKnown RBP10.34□□□□□ -0.75
CHD9-212ENST00000564641 FKBPLQ9UIM3 349 aa10.34□□□□□ -0.75
CHD9-212ENST00000564641 LRRN4Q8WUT4 740 aa10.33□□□□□ -0.76
CHD9-212ENST00000564641 GPSM3Q9Y4H4 160 aa10.32□□□□□ -0.76
CHD9-212ENST00000564641 MAGEB6P1A0A0J9YX57 407 aa10.31□□□□□ -0.76
CHD9-212ENST00000564641 RFC5P40937 340 aa10.31□□□□□ -0.76
CHD9-212ENST00000564641 WDR4P57081 412 aaKnown RBP10.31□□□□□ -0.76
CHD9-212ENST00000564641 TMEM259Q4ZIN3 620 aa10.31□□□□□ -0.76
CHD9-212ENST00000564641 CDV3Q9UKY7 258 aaKnown RBP10.31□□□□□ -0.76
CHD9-212ENST00000564641 GRM5P41594 1212 aa10.3□□□□□ -0.76
CHD9-212ENST00000564641 FBXO31Q5XUX0 539 aaPredicted RBP10.3□□□□□ -0.76
CHD9-212ENST00000564641 IL27Q8NEV9 243 aa10.3□□□□□ -0.76
CHD9-212ENST00000564641 SNRPBP14678 240 aaKnown RBP10.29□□□□□ -0.76
CHD9-212ENST00000564641 TIMP2P16035 220 aa10.29□□□□□ -0.76
CHD9-212ENST00000564641 BRPF1P55201 1214 aaPredicted RBP10.29□□□□□ -0.76
CHD9-212ENST00000564641 PTK2Q05397 1052 aa10.29□□□□□ -0.76
CHD9-212ENST00000564641 NR6A1Q15406 480 aa10.29□□□□□ -0.76
CHD9-212ENST00000564641 TREML4Q6UXN2 200 aa10.29□□□□□ -0.76
CHD9-212ENST00000564641 VASH1Q7L8A9 365 aaPredicted RBP10.29□□□□□ -0.76
CHD9-212ENST00000564641 ARHGAP9Q9BRR9 750 aa10.29□□□□□ -0.76
CHD9-212ENST00000564641 KLF16Q9BXK1 252 aaPredicted RBP10.29□□□□□ -0.76
CHD9-212ENST00000564641 USP17L8P0C7I0 530 aa10.28□□□□□ -0.76
CHD9-212ENST00000564641 SCARF1Q14162 830 aa10.28□□□□□ -0.76
CHD9-212ENST00000564641 BMP1P13497 986 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 ERFEQ4G0M1 354 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 TPRNQ4KMQ1 711 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 TRIM46Q7Z4K8 759 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 ZBTB33Q86T24 672 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 CARD14Q9BXL6 1004 aa10.27□□□□□ -0.77
CHD9-212ENST00000564641 ZIC2O95409 532 aaPredicted RBP10.26□□□□□ -0.77
CHD9-212ENST00000564641 MRPL14Q6P1L8 145 aaKnown RBP10.26□□□□□ -0.77
CHD9-212ENST00000564641 EMILIN1Q9Y6C2 1016 aa10.26□□□□□ -0.77
CHD9-212ENST00000564641 NR3C2P08235 984 aa10.25□□□□□ -0.77
CHD9-212ENST00000564641 FSHRP23945 695 aa10.25□□□□□ -0.77
CHD9-212ENST00000564641 SLC10A4Q96EP9 437 aa10.25□□□□□ -0.77
CHD9-212ENST00000564641 WFS1O76024 890 aa10.23□□□□□ -0.77
CHD9-212ENST00000564641 UPP2O95045 317 aa10.23□□□□□ -0.77
CHD9-212ENST00000564641 CCDC116Q8IYX3 515 aa10.23□□□□□ -0.77
CHD9-212ENST00000564641 ITPKCQ96DU7 683 aa10.23□□□□□ -0.77
CHD9-212ENST00000564641 ZFP42Q96MM3 310 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms