RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 HAP1P54257 671 aaPredicted RBP18.96■□□□□ 0.63
CLK3-216ENST00000564468 CABP2Q9NPB3 220 aa18.96■□□□□ 0.63
CLK3-216ENST00000564468 ALS2Q96Q42 1657 aa18.95■□□□□ 0.62
CLK3-216ENST00000564468 POLR3AO14802 1390 aaPredicted RBP18.95■□□□□ 0.62
CLK3-216ENST00000564468 CCDC125Q86Z20 511 aa18.95■□□□□ 0.62
CLK3-216ENST00000564468 ACEP12821 1306 aa18.95■□□□□ 0.62
CLK3-216ENST00000564468 PPIP5K1Q6PFW1 1433 aa18.94■□□□□ 0.62
CLK3-216ENST00000564468 SLC24A1O60721 1099 aa18.94■□□□□ 0.62
CLK3-216ENST00000564468 PAK3O75914 559 aaPredicted RBP18.94■□□□□ 0.62
CLK3-216ENST00000564468 FNBP4Q8N3X1 1017 aaPredicted RBP18.94■□□□□ 0.62
CLK3-216ENST00000564468 ABCA3Q99758 1704 aa18.92■□□□□ 0.62
CLK3-216ENST00000564468 BRD4O60885 1362 aaPredicted RBP18.92■□□□□ 0.62
CLK3-216ENST00000564468 CABP1Q9NZU7 370 aa18.89■□□□□ 0.61
CLK3-216ENST00000564468 CABLES1Q8TDN4 633 aa18.88■□□□□ 0.61
CLK3-216ENST00000564468 EP400Q96L91 3159 aa18.87■□□□□ 0.61
CLK3-216ENST00000564468 ZNF692Q9BU19 519 aaPredicted RBP18.87■□□□□ 0.61
CLK3-216ENST00000564468 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.87■□□□□ 0.61
CLK3-216ENST00000564468 PLEKHG5O94827 1062 aa18.86■□□□□ 0.61
CLK3-216ENST00000564468 PUS7Q96PZ0 661 aaKnown RBP18.86■□□□□ 0.61
CLK3-216ENST00000564468 AKAP12Q02952 1782 aa18.86■□□□□ 0.61
CLK3-216ENST00000564468 NWD2Q9ULI1 1742 aa18.86■□□□□ 0.61
CLK3-216ENST00000564468 ST20-MTHFSA0A0A6YYL1 179 aa18.85■□□□□ 0.61
CLK3-216ENST00000564468 CRYBG1Q9Y4K1 1723 aa18.85■□□□□ 0.61
CLK3-216ENST00000564468 ATRNO75882 1429 aa18.84■□□□□ 0.61
CLK3-216ENST00000564468 ABTB2Q8N961 1025 aa18.84■□□□□ 0.61
CLK3-216ENST00000564468 USP6P35125 1406 aa18.83■□□□□ 0.61
CLK3-216ENST00000564468 GJD4Q96KN9 370 aaPredicted RBP18.83■□□□□ 0.6
CLK3-216ENST00000564468 SLIT2O94813 1529 aa18.83■□□□□ 0.6
CLK3-216ENST00000564468 PLCH1Q4KWH8 1693 aa18.82■□□□□ 0.6
CLK3-216ENST00000564468 USP47Q96K76 1375 aa18.82■□□□□ 0.6
CLK3-216ENST00000564468 NLRP13Q86W25 1043 aa18.82■□□□□ 0.6
CLK3-216ENST00000564468 UNC5CLQ8IV45 518 aa18.82■□□□□ 0.6
CLK3-216ENST00000564468 BCL9LQ86UU0 1499 aa18.82■□□□□ 0.6
CLK3-216ENST00000564468 PHRF1Q9P1Y6 1649 aaKnown RBP18.82■□□□□ 0.6
CLK3-216ENST00000564468 COL14A1Q05707 1796 aaKnown RBP18.81■□□□□ 0.6
CLK3-216ENST00000564468 TESK2Q96S53 571 aa18.8■□□□□ 0.6
CLK3-216ENST00000564468 TMF1P82094 1093 aa18.79■□□□□ 0.6
CLK3-216ENST00000564468 TMC1Q8TDI8 760 aa18.79■□□□□ 0.6
CLK3-216ENST00000564468 MON2Q7Z3U7 1717 aa18.79■□□□□ 0.6
CLK3-216ENST00000564468 CPSF1Q10570 1443 aaKnown RBP18.78■□□□□ 0.6
CLK3-216ENST00000564468 FAM83GA6ND36 823 aa18.78■□□□□ 0.6
CLK3-216ENST00000564468 SF3B2Q13435 895 aaKnown RBP18.78■□□□□ 0.6
CLK3-216ENST00000564468 NUTM2GQ5VZR2 741 aa18.78■□□□□ 0.6
CLK3-216ENST00000564468 KTN1Q86UP2 1357 aaKnown RBP18.78■□□□□ 0.6
CLK3-216ENST00000564468 NINLQ9Y2I6 1382 aa18.78■□□□□ 0.6
CLK3-216ENST00000564468 TTC21AQ8NDW8 1320 aa18.77■□□□□ 0.6
CLK3-216ENST00000564468 CDCA8Q53HL2 280 aa18.77■□□□□ 0.6
CLK3-216ENST00000564468 HDGFL2Q7Z4V5 671 aaPredicted RBP18.77■□□□□ 0.6
CLK3-216ENST00000564468 PRDM11Q9NQV5 511 aa18.77■□□□□ 0.6
CLK3-216ENST00000564468 SSH2Q76I76 1423 aa18.76■□□□□ 0.59
CLK3-216ENST00000564468 NLRP6P59044 892 aa18.76■□□□□ 0.59
CLK3-216ENST00000564468 TERF2IPQ9NYB0 399 aa18.76■□□□□ 0.59
CLK3-216ENST00000564468 USP19O94966 1318 aa18.75■□□□□ 0.59
CLK3-216ENST00000564468 TTC21BQ7Z4L5 1316 aa18.75■□□□□ 0.59
CLK3-216ENST00000564468 PIK3C2AO00443 1686 aa18.74■□□□□ 0.59
CLK3-216ENST00000564468 NRKQ7Z2Y5 1582 aa18.74■□□□□ 0.59
CLK3-216ENST00000564468 VPS72Q15906 364 aa18.74■□□□□ 0.59
CLK3-216ENST00000564468 BTG4Q9NY30 223 aa18.74■□□□□ 0.59
CLK3-216ENST00000564468 BLMP54132 1417 aaPredicted RBP18.74■□□□□ 0.59
CLK3-216ENST00000564468 KIAA0232Q92628 1395 aa18.73■□□□□ 0.59
CLK3-216ENST00000564468 GCP02774 474 aa18.73■□□□□ 0.59
CLK3-216ENST00000564468 ZC3H6P61129 1189 aaKnown RBP18.73■□□□□ 0.59
CLK3-216ENST00000564468 SLC12A5Q9H2X9 1139 aa18.73■□□□□ 0.59
CLK3-216ENST00000564468 NRAPQ86VF7 1730 aa18.73■□□□□ 0.59
CLK3-216ENST00000564468 CCDC9Q9Y3X0 531 aaKnown RBP18.72■□□□□ 0.59
CLK3-216ENST00000564468 CPDO75976 1380 aa18.71■□□□□ 0.59
CLK3-216ENST00000564468 EDC4Q6P2E9 1401 aaKnown RBP18.7■□□□□ 0.58
CLK3-216ENST00000564468 KCNH5Q8NCM2 988 aa18.7■□□□□ 0.58
CLK3-216ENST00000564468 CD163L1Q9NR16 1453 aa18.7■□□□□ 0.58
CLK3-216ENST00000564468 SLIT3O75094 1523 aa18.69■□□□□ 0.58
CLK3-216ENST00000564468 GLI3P10071 1580 aa18.69■□□□□ 0.58
CLK3-216ENST00000564468 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.58
CLK3-216ENST00000564468 CHRNA2Q15822 529 aa18.68■□□□□ 0.58
CLK3-216ENST00000564468 A0A1W2PP64 1363 aa18.68■□□□□ 0.58
CLK3-216ENST00000564468 USP54Q70EL1 1684 aa18.67■□□□□ 0.58
CLK3-216ENST00000564468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLK3-216ENST00000564468 SEPT12Q8IYM1 358 aa18.67■□□□□ 0.58
CLK3-216ENST00000564468 EVA1CP58658 441 aa18.66■□□□□ 0.58
CLK3-216ENST00000564468 USP31Q70CQ4 1352 aa18.66■□□□□ 0.58
CLK3-216ENST00000564468 DEFB132Q7Z7B7 95 aa18.65■□□□□ 0.58
CLK3-216ENST00000564468 LMO7Q8WWI1 1683 aa18.65■□□□□ 0.58
CLK3-216ENST00000564468 ANKRD36BQ8N2N9 1353 aa18.65■□□□□ 0.58
CLK3-216ENST00000564468 ONECUT3O60422 494 aaPredicted RBP18.64■□□□□ 0.57
CLK3-216ENST00000564468 STRN4Q9NRL3 753 aa18.64■□□□□ 0.57
CLK3-216ENST00000564468 BRWD3Q6RI45 1802 aa18.64■□□□□ 0.57
CLK3-216ENST00000564468 KRT27Q7Z3Y8 459 aa18.63■□□□□ 0.57
CLK3-216ENST00000564468 SPATA31A5Q5VU36 1347 aa18.63■□□□□ 0.57
CLK3-216ENST00000564468 SPATA31A7Q8IWB4 1347 aa18.63■□□□□ 0.57
CLK3-216ENST00000564468 CAMTA1Q9Y6Y1 1673 aa18.63■□□□□ 0.57
CLK3-216ENST00000564468 ZBTB7CA1YPR0 619 aa18.62■□□□□ 0.57
CLK3-216ENST00000564468 AATKQ6ZMQ8 1374 aa18.62■□□□□ 0.57
CLK3-216ENST00000564468 HSPA5P11021 654 aaKnown RBP18.61■□□□□ 0.57
CLK3-216ENST00000564468 BAG6P46379 1132 aa18.61■□□□□ 0.57
CLK3-216ENST00000564468 NME9Q86XW9 330 aa18.61■□□□□ 0.57
CLK3-216ENST00000564468 COL18A1P39060 1754 aa18.6■□□□□ 0.57
CLK3-216ENST00000564468 RGPD5Q99666 1765 aa18.6■□□□□ 0.57
CLK3-216ENST00000564468 A0A0G2JS52 829 aa18.6■□□□□ 0.57
CLK3-216ENST00000564468 MYT1Q01538 1121 aa18.6■□□□□ 0.57
CLK3-216ENST00000564468 ARHGEF25Q86VW2 580 aa18.6■□□□□ 0.57
CLK3-216ENST00000564468 SPATA31A1Q5TZJ5 1347 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms