RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CRYBG1Q9Y4K1 1723 aa24.88■■□□□ 1.57
VPS9D1-203ENST00000563798 PLEKHG5O94827 1062 aa24.85■■□□□ 1.57
VPS9D1-203ENST00000563798 COL14A1Q05707 1796 aaKnown RBP24.85■■□□□ 1.57
VPS9D1-203ENST00000563798 CENPJQ9HC77 1338 aaPredicted RBP24.85■■□□□ 1.57
VPS9D1-203ENST00000563798 EP400Q96L91 3159 aa24.85■■□□□ 1.57
VPS9D1-203ENST00000563798 NRAPQ86VF7 1730 aa24.84■■□□□ 1.57
VPS9D1-203ENST00000563798 ACEP12821 1306 aa24.84■■□□□ 1.57
VPS9D1-203ENST00000563798 PAK3O75914 559 aaPredicted RBP24.83■■□□□ 1.57
VPS9D1-203ENST00000563798 NBPF8Q3BBV2 869 aa24.83■■□□□ 1.57
VPS9D1-203ENST00000563798 SEPT12Q8IYM1 358 aa24.82■■□□□ 1.56
VPS9D1-203ENST00000563798 SIN3AQ96ST3 1273 aa24.82■■□□□ 1.56
VPS9D1-203ENST00000563798 BTG4Q9NY30 223 aa24.82■■□□□ 1.56
VPS9D1-203ENST00000563798 BRWD3Q6RI45 1802 aa24.79■■□□□ 1.56
VPS9D1-203ENST00000563798 CCDC9Q9Y3X0 531 aaKnown RBP24.78■■□□□ 1.56
VPS9D1-203ENST00000563798 TRPM1Q7Z4N2 1603 aa24.78■■□□□ 1.56
VPS9D1-203ENST00000563798 BRD4O60885 1362 aaPredicted RBP24.77■■□□□ 1.56
VPS9D1-203ENST00000563798 BLMP54132 1417 aaPredicted RBP24.77■■□□□ 1.56
VPS9D1-203ENST00000563798 SRPK2P78362 688 aaKnown RBP24.76■■□□□ 1.55
VPS9D1-203ENST00000563798 PPIP5K1Q6PFW1 1433 aa24.76■■□□□ 1.55
VPS9D1-203ENST00000563798 PHRF1Q9P1Y6 1649 aaKnown RBP24.75■■□□□ 1.55
VPS9D1-203ENST00000563798 QRICH2Q9H0J4 1663 aa24.75■■□□□ 1.55
VPS9D1-203ENST00000563798 PRDM11Q9NQV5 511 aa24.75■■□□□ 1.55
VPS9D1-203ENST00000563798 KRT27Q7Z3Y8 459 aa24.74■■□□□ 1.55
VPS9D1-203ENST00000563798 CABP2Q9NPB3 220 aa24.74■■□□□ 1.55
VPS9D1-203ENST00000563798 SPATA31A5Q5VU36 1347 aa24.74■■□□□ 1.55
VPS9D1-203ENST00000563798 SPATA31A7Q8IWB4 1347 aa24.74■■□□□ 1.55
VPS9D1-203ENST00000563798 KIAA0232Q92628 1395 aa24.74■■□□□ 1.55
VPS9D1-203ENST00000563798 USP19O94966 1318 aa24.72■■□□□ 1.55
VPS9D1-203ENST00000563798 NEUROD1Q13562 356 aa24.72■■□□□ 1.55
VPS9D1-203ENST00000563798 FAM98CQ17RN3 349 aaKnown RBP24.7■■□□□ 1.54
VPS9D1-203ENST00000563798 ABTB2Q8N961 1025 aa24.7■■□□□ 1.54
VPS9D1-203ENST00000563798 ROCK2O75116 1388 aaKnown RBP24.69■■□□□ 1.54
VPS9D1-203ENST00000563798 CPDO75976 1380 aa24.69■■□□□ 1.54
VPS9D1-203ENST00000563798 NUTM2GQ5VZR2 741 aa24.69■■□□□ 1.54
VPS9D1-203ENST00000563798 NRKQ7Z2Y5 1582 aa24.68■■□□□ 1.54
VPS9D1-203ENST00000563798 EVC2Q86UK5 1308 aa24.68■■□□□ 1.54
VPS9D1-203ENST00000563798 CABP1Q9NZU7 370 aa24.68■■□□□ 1.54
VPS9D1-203ENST00000563798 THSD7AQ9UPZ6 1657 aa24.67■■□□□ 1.54
VPS9D1-203ENST00000563798 ZC3H6P61129 1189 aaKnown RBP24.67■■□□□ 1.54
VPS9D1-203ENST00000563798 NLRP13Q86W25 1043 aa24.67■■□□□ 1.54
VPS9D1-203ENST00000563798 USP6P35125 1406 aa24.67■■□□□ 1.54
VPS9D1-203ENST00000563798 SPATA31A1Q5TZJ5 1347 aa24.66■■□□□ 1.54
VPS9D1-203ENST00000563798 CHRNA2Q15822 529 aa24.66■■□□□ 1.54
VPS9D1-203ENST00000563798 ZRANB1Q9UGI0 708 aa24.66■■□□□ 1.54
VPS9D1-203ENST00000563798 SSH2Q76I76 1423 aa24.66■■□□□ 1.54
VPS9D1-203ENST00000563798 GCP02774 474 aa24.63■■□□□ 1.53
VPS9D1-203ENST00000563798 LMO7Q8WWI1 1683 aa24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 A0A0G2JS52 829 aa24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 MYT1Q01538 1121 aa24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 SF3B2Q13435 895 aaKnown RBP24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 SBNO2Q9Y2G9 1366 aa24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 CAMTA1Q9Y6Y1 1673 aa24.62■■□□□ 1.53
VPS9D1-203ENST00000563798 ZNF692Q9BU19 519 aaPredicted RBP24.6■■□□□ 1.53
VPS9D1-203ENST00000563798 BARGINQ6ZT62 677 aa24.59■■□□□ 1.53
VPS9D1-203ENST00000563798 DEFB132Q7Z7B7 95 aa24.59■■□□□ 1.53
VPS9D1-203ENST00000563798 STRN4Q9NRL3 753 aa24.59■■□□□ 1.53
VPS9D1-203ENST00000563798 SLIT3O75094 1523 aa24.59■■□□□ 1.53
VPS9D1-203ENST00000563798 EVA1CP58658 441 aa24.57■■□□□ 1.52
VPS9D1-203ENST00000563798 CPSF1Q10570 1443 aaKnown RBP24.56■■□□□ 1.52
VPS9D1-203ENST00000563798 NLRP6P59044 892 aa24.56■■□□□ 1.52
VPS9D1-203ENST00000563798 AATKQ6ZMQ8 1374 aa24.54■■□□□ 1.52
VPS9D1-203ENST00000563798 LARP1Q6PKG0 1096 aaKnown RBP24.54■■□□□ 1.52
VPS9D1-203ENST00000563798 PIK3C2AO00443 1686 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 COL5A2P05997 1499 aaPredicted RBP24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 AKAP12Q02952 1782 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 BAG6P46379 1132 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 CARD11Q9BXL7 1154 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 THRAP3Q9Y2W1 955 aaKnown RBP24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 TTC21BQ7Z4L5 1316 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 TONSLQ96HA7 1378 aa24.53■■□□□ 1.52
VPS9D1-203ENST00000563798 DISP2A7MBM2 1401 aa24.52■■□□□ 1.52
VPS9D1-203ENST00000563798 TCP11L2Q8N4U5 519 aa24.52■■□□□ 1.52
VPS9D1-203ENST00000563798 TTC21AQ8NDW8 1320 aa24.52■■□□□ 1.52
VPS9D1-203ENST00000563798 RGPD1P0DJD0 1748 aa24.52■■□□□ 1.52
VPS9D1-203ENST00000563798 SRCAPQ6ZRS2 3230 aa24.51■■□□□ 1.51
VPS9D1-203ENST00000563798 TRIM26Q12899 539 aaPredicted RBP24.5■■□□□ 1.51
VPS9D1-203ENST00000563798 FAM182BQ5T319 152 aa24.5■■□□□ 1.51
VPS9D1-203ENST00000563798 FAM196AQ6ZSG2 479 aa24.5■■□□□ 1.51
VPS9D1-203ENST00000563798 USP35Q9P2H5 1018 aa24.49■■□□□ 1.51
VPS9D1-203ENST00000563798 CRB1P82279 1406 aa24.48■■□□□ 1.51
VPS9D1-203ENST00000563798 COL18A1P39060 1754 aa24.47■■□□□ 1.51
VPS9D1-203ENST00000563798 KCNH5Q8NCM2 988 aa24.47■■□□□ 1.51
VPS9D1-203ENST00000563798 PUS7Q96PZ0 661 aaKnown RBP24.47■■□□□ 1.51
VPS9D1-203ENST00000563798 KTN1Q86UP2 1357 aaKnown RBP24.46■■□□□ 1.51
VPS9D1-203ENST00000563798 TNS1Q9HBL0 1735 aaKnown RBP24.46■■□□□ 1.51
VPS9D1-203ENST00000563798 ARHGEF25Q86VW2 580 aa24.45■■□□□ 1.5
VPS9D1-203ENST00000563798 MON2Q7Z3U7 1717 aa24.44■■□□□ 1.5
VPS9D1-203ENST00000563798 PDE3BQ13370 1112 aa24.44■■□□□ 1.5
VPS9D1-203ENST00000563798 CD163L1Q9NR16 1453 aa24.44■■□□□ 1.5
VPS9D1-203ENST00000563798 EN1Q05925 392 aaPredicted RBP24.43■■□□□ 1.5
VPS9D1-203ENST00000563798 PARP4Q9UKK3 1724 aaKnown RBP24.43■■□□□ 1.5
VPS9D1-203ENST00000563798 USP31Q70CQ4 1352 aa24.42■■□□□ 1.5
VPS9D1-203ENST00000563798 AXIN2Q9Y2T1 843 aa24.42■■□□□ 1.5
VPS9D1-203ENST00000563798 NFAT5O94916 1531 aa24.41■■□□□ 1.5
VPS9D1-203ENST00000563798 C11orf95C9JLR9 678 aaPredicted RBP24.41■■□□□ 1.5
VPS9D1-203ENST00000563798 WDR17Q8IZU2 1322 aa24.4■■□□□ 1.5
VPS9D1-203ENST00000563798 TRIM37O94972 964 aa24.4■■□□□ 1.5
VPS9D1-203ENST00000563798 ABCC6O95255 1503 aa24.4■■□□□ 1.5
VPS9D1-203ENST00000563798 USP54Q70EL1 1684 aa24.4■■□□□ 1.5
VPS9D1-203ENST00000563798 CAMKK2Q96RR4 588 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms