RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 ZNF511Q8NB15 262 aa10.3□□□□□ -0.76
SMG1-206ENST00000562668 POTECB2RU33 542 aa10.29□□□□□ -0.76
SMG1-206ENST00000562668 ALDH1A1P00352 501 aa10.29□□□□□ -0.76
SMG1-206ENST00000562668 BAP1Q92560 729 aa10.29□□□□□ -0.76
SMG1-206ENST00000562668 GPBP1L1Q9HC44 474 aaPredicted RBP10.29□□□□□ -0.76
SMG1-206ENST00000562668 MAP10Q9P2G4 905 aa10.29□□□□□ -0.76
SMG1-206ENST00000562668 SIAH2O43255 324 aa10.28□□□□□ -0.76
SMG1-206ENST00000562668 TSC1Q92574 1164 aa10.28□□□□□ -0.76
SMG1-206ENST00000562668 KDM4CQ9H3R0 1056 aa10.28□□□□□ -0.76
SMG1-206ENST00000562668 DACH1Q9UI36 760 aa10.28□□□□□ -0.76
SMG1-206ENST00000562668 HPS1Q92902 700 aa10.27□□□□□ -0.77
SMG1-206ENST00000562668 PER1O15534 1290 aaPredicted RBP10.26□□□□□ -0.77
SMG1-206ENST00000562668 HELBQ8NG08 1087 aaPredicted RBP10.26□□□□□ -0.77
SMG1-206ENST00000562668 POLR3EQ9NVU0 708 aa10.26□□□□□ -0.77
SMG1-206ENST00000562668 RTL5Q5HYW3 569 aaPredicted RBP10.25□□□□□ -0.77
SMG1-206ENST00000562668 DDRGK1Q96HY6 314 aa10.25□□□□□ -0.77
SMG1-206ENST00000562668 TLL2Q9Y6L7 1015 aa10.24□□□□□ -0.77
SMG1-206ENST00000562668 VARSP26640 1264 aaKnown RBP10.23□□□□□ -0.77
SMG1-206ENST00000562668 SH3D19Q5HYK7 790 aa10.23□□□□□ -0.77
SMG1-206ENST00000562668 ZNF775Q96BV0 537 aaPredicted RBP10.23□□□□□ -0.77
SMG1-206ENST00000562668 GMPR2Q9P2T1 348 aaKnown RBP10.23□□□□□ -0.77
SMG1-206ENST00000562668 WASF2Q9Y6W5 498 aa10.23□□□□□ -0.77
SMG1-206ENST00000562668 FAM117AQ9C073 453 aa10.22□□□□□ -0.77
SMG1-206ENST00000562668 ATP13A2Q9NQ11 1180 aa10.22□□□□□ -0.77
SMG1-206ENST00000562668 SKIV2LQ15477 1246 aaKnown RBP10.2□□□□□ -0.78
SMG1-206ENST00000562668 PLEKHG3A1L390 1219 aa10.19□□□□□ -0.78
SMG1-206ENST00000562668 MPNDQ8N594 471 aa10.19□□□□□ -0.78
SMG1-206ENST00000562668 FAM174AQ8TBP5 190 aa10.19□□□□□ -0.78
SMG1-206ENST00000562668 FOXJ1Q92949 421 aa10.19□□□□□ -0.78
SMG1-206ENST00000562668 C11orf95C9JLR9 678 aaPredicted RBP10.18□□□□□ -0.78
SMG1-206ENST00000562668 ARMC2Q8NEN0 867 aa10.18□□□□□ -0.78
SMG1-206ENST00000562668 NBPF14Q5TI25 921 aa10.17□□□□□ -0.78
SMG1-206ENST00000562668 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.16□□□□□ -0.78
SMG1-206ENST00000562668 NNTQ13423 1086 aa10.15□□□□□ -0.78
SMG1-206ENST00000562668 AGERQ15109 404 aa10.15□□□□□ -0.78
SMG1-206ENST00000562668 C4orf48Q5BLP8 95 aa10.15□□□□□ -0.78
SMG1-206ENST00000562668 BPHLQ86WA6 291 aaPredicted RBP10.15□□□□□ -0.78
SMG1-206ENST00000562668 PROCA1Q8NCQ7 364 aaPredicted RBP10.15□□□□□ -0.78
SMG1-206ENST00000562668 TRIM47Q96LD4 638 aa10.15□□□□□ -0.78
SMG1-206ENST00000562668 SENP2Q9HC62 589 aa10.15□□□□□ -0.78
SMG1-206ENST00000562668 CAPN5O15484 640 aaPredicted RBP10.14□□□□□ -0.79
SMG1-206ENST00000562668 ADH1CP00326 375 aa10.14□□□□□ -0.79
SMG1-206ENST00000562668 CTDSPL2Q05D32 466 aa10.14□□□□□ -0.79
SMG1-206ENST00000562668 FBXO31Q5XUX0 539 aaPredicted RBP10.14□□□□□ -0.79
SMG1-206ENST00000562668 PPP2R2DQ66LE6 453 aa10.14□□□□□ -0.79
SMG1-206ENST00000562668 CDK15Q96Q40 435 aa10.13□□□□□ -0.79
SMG1-206ENST00000562668 ATP1B4Q9UN42 357 aaPredicted RBP10.13□□□□□ -0.79
SMG1-206ENST00000562668 BMP1P13497 986 aa10.12□□□□□ -0.79
SMG1-206ENST00000562668 GPKOWQ92917 476 aaPredicted RBP eCLIP10.12□□□□□ -0.79
SMG1-206ENST00000562668 KIFC2Q96AC6 838 aa10.12□□□□□ -0.79
SMG1-206ENST00000562668 C1QTNF2Q9BXJ5 285 aa10.12□□□□□ -0.79
SMG1-206ENST00000562668 SNRPBP14678 240 aaKnown RBP10.11□□□□□ -0.79
SMG1-206ENST00000562668 SH3BP5LQ7L8J4 393 aa10.11□□□□□ -0.79
SMG1-206ENST00000562668 SH3RF1Q7Z6J0 888 aa10.11□□□□□ -0.79
SMG1-206ENST00000562668 LRRN4Q8WUT4 740 aa10.11□□□□□ -0.79
SMG1-206ENST00000562668 ARID5BQ14865 1188 aa10.1□□□□□ -0.79
SMG1-206ENST00000562668 NEUROD2Q15784 382 aa10.1□□□□□ -0.79
SMG1-206ENST00000562668 TRIM46Q7Z4K8 759 aa10.1□□□□□ -0.79
SMG1-206ENST00000562668 TIMP2P16035 220 aa10.09□□□□□ -0.79
SMG1-206ENST00000562668 MAGEB6P1A0A0J9YX57 407 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 AP1G2O75843 785 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 WDR4P57081 412 aaKnown RBP10.07□□□□□ -0.8
SMG1-206ENST00000562668 NR5A1Q13285 461 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 TRMT44Q8IYL2 757 aaKnown RBP10.07□□□□□ -0.8
SMG1-206ENST00000562668 CARD14Q9BXL6 1004 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 FKBPLQ9UIM3 349 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 MAP4K5Q9Y4K4 846 aa10.07□□□□□ -0.8
SMG1-206ENST00000562668 ZC3H4Q9UPT8 1303 aaKnown RBP10.07□□□□□ -0.8
SMG1-206ENST00000562668 NR3C2P08235 984 aa10.06□□□□□ -0.8
SMG1-206ENST00000562668 TREML4Q6UXN2 200 aa10.06□□□□□ -0.8
SMG1-206ENST00000562668 GOPCQ9HD26 462 aa10.06□□□□□ -0.8
SMG1-206ENST00000562668 USP17L8P0C7I0 530 aa10.05□□□□□ -0.8
SMG1-206ENST00000562668 FSHRP23945 695 aa10.05□□□□□ -0.8
SMG1-206ENST00000562668 NR6A1Q15406 480 aa10.05□□□□□ -0.8
SMG1-206ENST00000562668 KLF16Q9BXK1 252 aaPredicted RBP10.05□□□□□ -0.8
SMG1-206ENST00000562668 GRM5P41594 1212 aa10.04□□□□□ -0.8
SMG1-206ENST00000562668 LCE2AQ5TA79 106 aaPredicted RBP10.04□□□□□ -0.8
SMG1-206ENST00000562668 PDXDC2PQ6P474 469 aa10.04□□□□□ -0.8
SMG1-206ENST00000562668 ZIC2O95409 532 aaPredicted RBP10.03□□□□□ -0.8
SMG1-206ENST00000562668 RFC5P40937 340 aa10.03□□□□□ -0.8
SMG1-206ENST00000562668 ERFEQ4G0M1 354 aa10.03□□□□□ -0.8
SMG1-206ENST00000562668 VASH1Q7L8A9 365 aaPredicted RBP10.03□□□□□ -0.8
SMG1-206ENST00000562668 PCMTD1Q96MG8 357 aaPredicted RBP10.03□□□□□ -0.8
SMG1-206ENST00000562668 ARHGAP9Q9BRR9 750 aa10.03□□□□□ -0.8
SMG1-206ENST00000562668 BRPF1P55201 1214 aaPredicted RBP10.02□□□□□ -0.81
SMG1-206ENST00000562668 MRPL14Q6P1L8 145 aaKnown RBP10.02□□□□□ -0.81
SMG1-206ENST00000562668 ITPKCQ96DU7 683 aa10.02□□□□□ -0.81
SMG1-206ENST00000562668 ZFAND3Q9H8U3 227 aa10.02□□□□□ -0.81
SMG1-206ENST00000562668 WFS1O76024 890 aa10.01□□□□□ -0.81
SMG1-206ENST00000562668 NFX1Q12986 1120 aaKnown RBP10.01□□□□□ -0.81
SMG1-206ENST00000562668 ZFP42Q96MM3 310 aa10.01□□□□□ -0.81
SMG1-206ENST00000562668 HMX1Q9NP08 348 aaPredicted RBP10.01□□□□□ -0.81
SMG1-206ENST00000562668 SCARF1Q14162 830 aa10□□□□□ -0.81
SMG1-206ENST00000562668 SLC10A4Q96EP9 437 aa10□□□□□ -0.81
SMG1-206ENST00000562668 PNMA1Q8ND90 353 aa9.99□□□□□ -0.81
SMG1-206ENST00000562668 IL27Q8NEV9 243 aa9.99□□□□□ -0.81
SMG1-206ENST00000562668 EPS8L1Q8TE68 723 aa9.99□□□□□ -0.81
SMG1-206ENST00000562668 TERTO14746 1132 aaKnown RBP9.98□□□□□ -0.81
SMG1-206ENST00000562668 TPRNQ4KMQ1 711 aa9.98□□□□□ -0.81
SMG1-206ENST00000562668 PURBQ96QR8 312 aaKnown RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms