RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 NLRP13Q86W25 1043 aa18.4■□□□□ 0.54
VPS39-206ENST00000562662 NGDNQ8NEJ9 315 aaKnown RBP18.4■□□□□ 0.54
VPS39-206ENST00000562662 TTC21BQ7Z4L5 1316 aa18.4■□□□□ 0.54
VPS39-206ENST00000562662 PIK3C2AO00443 1686 aa18.4■□□□□ 0.54
VPS39-206ENST00000562662 MORC1Q86VD1 984 aa18.39■□□□□ 0.53
VPS39-206ENST00000562662 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.39■□□□□ 0.53
VPS39-206ENST00000562662 GGNBP2Q9H3C7 697 aa18.39■□□□□ 0.53
VPS39-206ENST00000562662 MRS2Q9HD23 443 aa18.39■□□□□ 0.53
VPS39-206ENST00000562662 MARF1Q9Y4F3 1742 aaKnown RBP18.39■□□□□ 0.53
VPS39-206ENST00000562662 TRPM3Q9HCF6 1732 aaPredicted RBP18.38■□□□□ 0.53
VPS39-206ENST00000562662 ESCO1Q5FWF5 840 aa18.38■□□□□ 0.53
VPS39-206ENST00000562662 ORAI2Q96SN7 254 aa18.38■□□□□ 0.53
VPS39-206ENST00000562662 NME9Q86XW9 330 aa18.37■□□□□ 0.53
VPS39-206ENST00000562662 MAP2P11137 1827 aaKnown RBP18.37■□□□□ 0.53
VPS39-206ENST00000562662 OVOS2A0A0J9YW53 1432 aa18.36■□□□□ 0.53
VPS39-206ENST00000562662 OVOS2Q6IE36 1432 aa18.36■□□□□ 0.53
VPS39-206ENST00000562662 TTC21AQ8NDW8 1320 aa18.36■□□□□ 0.53
VPS39-206ENST00000562662 ZRANB1Q9UGI0 708 aa18.34■□□□□ 0.53
VPS39-206ENST00000562662 USP31Q70CQ4 1352 aa18.32■□□□□ 0.52
VPS39-206ENST00000562662 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
VPS39-206ENST00000562662 ALS2Q96Q42 1657 aa18.31■□□□□ 0.52
VPS39-206ENST00000562662 TNNT2P45379 298 aaPredicted RBP18.31■□□□□ 0.52
VPS39-206ENST00000562662 SHPRHQ149N8 1683 aa18.31■□□□□ 0.52
VPS39-206ENST00000562662 PNISRQ8TF01 805 aaKnown RBP18.3■□□□□ 0.52
VPS39-206ENST00000562662 COG3Q96JB2 828 aa18.3■□□□□ 0.52
VPS39-206ENST00000562662 FOXO3O43524 673 aa18.29■□□□□ 0.52
VPS39-206ENST00000562662 NHSL1Q5SYE7 1610 aa18.29■□□□□ 0.52
VPS39-206ENST00000562662 AATKQ6ZMQ8 1374 aa18.29■□□□□ 0.52
VPS39-206ENST00000562662 PSME1Q06323 249 aa18.28■□□□□ 0.52
VPS39-206ENST00000562662 SLAIN2Q9P270 581 aa18.28■□□□□ 0.52
VPS39-206ENST00000562662 SMG6Q86US8 1419 aaKnown RBP18.28■□□□□ 0.52
VPS39-206ENST00000562662 PXDNQ92626 1479 aa18.27■□□□□ 0.52
VPS39-206ENST00000562662 BRINP3Q76B58 766 aa18.27■□□□□ 0.52
VPS39-206ENST00000562662 YTHDC1Q96MU7 727 aaKnown RBP18.27■□□□□ 0.52
VPS39-206ENST00000562662 COL3A1P02461 1466 aaPredicted RBP18.26■□□□□ 0.51
VPS39-206ENST00000562662 KRT28Q7Z3Y7 464 aa18.26■□□□□ 0.51
VPS39-206ENST00000562662 FAM9BQ8IZU0 186 aa18.26■□□□□ 0.51
VPS39-206ENST00000562662 MTHFSP49914 203 aa18.25■□□□□ 0.51
VPS39-206ENST00000562662 NPHP3Q7Z494 1330 aa18.24■□□□□ 0.51
VPS39-206ENST00000562662 PEAK1Q9H792 1746 aa18.24■□□□□ 0.51
VPS39-206ENST00000562662 PAK3O75914 559 aaPredicted RBP18.24■□□□□ 0.51
VPS39-206ENST00000562662 XPCQ01831 940 aaPredicted RBP18.24■□□□□ 0.51
VPS39-206ENST00000562662 ROBO1Q9Y6N7 1651 aa18.24■□□□□ 0.51
VPS39-206ENST00000562662 SBNO1A3KN83 1393 aa18.23■□□□□ 0.51
VPS39-206ENST00000562662 FBLN1P23142 703 aa18.23■□□□□ 0.51
VPS39-206ENST00000562662 ABTB2Q8N961 1025 aa18.23■□□□□ 0.51
VPS39-206ENST00000562662 DDX17Q92841 729 aaKnown RBP18.23■□□□□ 0.51
VPS39-206ENST00000562662 POLKQ9UBT6 870 aa18.23■□□□□ 0.51
VPS39-206ENST00000562662 CRYBG1Q9Y4K1 1723 aa18.23■□□□□ 0.51
VPS39-206ENST00000562662 LTN1O94822 1766 aa18.22■□□□□ 0.51
VPS39-206ENST00000562662 CDK12Q9NYV4 1490 aaPredicted RBP18.22■□□□□ 0.51
VPS39-206ENST00000562662 INSRP06213 1382 aa18.22■□□□□ 0.51
VPS39-206ENST00000562662 PNPLA6Q8IY17 1366 aa18.22■□□□□ 0.51
VPS39-206ENST00000562662 NLRP6P59044 892 aa18.22■□□□□ 0.51
VPS39-206ENST00000562662 SLIT3O75094 1523 aa18.22■□□□□ 0.51
VPS39-206ENST00000562662 NFAT5O94916 1531 aa18.21■□□□□ 0.51
VPS39-206ENST00000562662 PHRF1Q9P1Y6 1649 aaKnown RBP18.2■□□□□ 0.5
VPS39-206ENST00000562662 NUTM2GQ5VZR2 741 aa18.2■□□□□ 0.5
VPS39-206ENST00000562662 EMILIN1Q9Y6C2 1016 aa18.2■□□□□ 0.5
VPS39-206ENST00000562662 TNS3Q68CZ2 1445 aa18.2■□□□□ 0.5
VPS39-206ENST00000562662 IQSEC2Q5JU85 1478 aa18.2■□□□□ 0.5
VPS39-206ENST00000562662 BLMP54132 1417 aaPredicted RBP18.19■□□□□ 0.5
VPS39-206ENST00000562662 CFAP53Q96M91 514 aa18.19■□□□□ 0.5
VPS39-206ENST00000562662 MED1Q15648 1581 aaPredicted RBP18.18■□□□□ 0.5
VPS39-206ENST00000562662 RRS1Q15050 365 aaKnown RBP18.18■□□□□ 0.5
VPS39-206ENST00000562662 AHDC1Q5TGY3 1603 aaPredicted RBP18.18■□□□□ 0.5
VPS39-206ENST00000562662 USP19O94966 1318 aa18.18■□□□□ 0.5
VPS39-206ENST00000562662 SOS2Q07890 1332 aaPredicted RBP18.18■□□□□ 0.5
VPS39-206ENST00000562662 WDR43Q15061 677 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS39-206ENST00000562662 SPATA31A3Q5VYP0 1347 aa18.16■□□□□ 0.5
VPS39-206ENST00000562662 ABCA3Q99758 1704 aa18.15■□□□□ 0.5
VPS39-206ENST00000562662 ADAMTS8Q9UP79 889 aa18.15■□□□□ 0.5
VPS39-206ENST00000562662 SOX12O15370 315 aa18.14■□□□□ 0.49
VPS39-206ENST00000562662 MAP3K19Q56UN5 1328 aa18.14■□□□□ 0.49
VPS39-206ENST00000562662 HNRNPUQ00839 825 aaKnown RBP eCLIP18.13■□□□□ 0.49
VPS39-206ENST00000562662 ARHGEF10O15013 1369 aa18.13■□□□□ 0.49
VPS39-206ENST00000562662 RGPD1P0DJD0 1748 aa18.12■□□□□ 0.49
VPS39-206ENST00000562662 PPM1GO15355 546 aaPredicted RBP18.12■□□□□ 0.49
VPS39-206ENST00000562662 LMOD2Q6P5Q4 547 aa18.12■□□□□ 0.49
VPS39-206ENST00000562662 KIF24Q5T7B8 1368 aa18.12■□□□□ 0.49
VPS39-206ENST00000562662 DIAPH1O60610 1272 aaKnown RBP18.11■□□□□ 0.49
VPS39-206ENST00000562662 KCNH5Q8NCM2 988 aa18.11■□□□□ 0.49
VPS39-206ENST00000562662 FLT4P35916 1363 aa18.11■□□□□ 0.49
VPS39-206ENST00000562662 PHLPP1O60346 1717 aa18.11■□□□□ 0.49
VPS39-206ENST00000562662 RTL1A6NKG5 1358 aa18.1■□□□□ 0.49
VPS39-206ENST00000562662 COL16A1Q07092 1604 aaPredicted RBP18.09■□□□□ 0.49
VPS39-206ENST00000562662 TOM1O60784 492 aa18.09■□□□□ 0.49
VPS39-206ENST00000562662 GCP02774 474 aa18.09■□□□□ 0.49
VPS39-206ENST00000562662 IL13P35225 146 aa18.09■□□□□ 0.49
VPS39-206ENST00000562662 RGPD5Q99666 1765 aa18.09■□□□□ 0.49
VPS39-206ENST00000562662 NUDCQ9Y266 331 aa18.08■□□□□ 0.48
VPS39-206ENST00000562662 COL18A1P39060 1754 aa18.08■□□□□ 0.48
VPS39-206ENST00000562662 COL22A1Q8NFW1 1626 aaPredicted RBP18.08■□□□□ 0.48
VPS39-206ENST00000562662 HSP90AB2PQ58FF8 381 aa18.07■□□□□ 0.48
VPS39-206ENST00000562662 ZBED9Q6R2W3 1325 aa18.06■□□□□ 0.48
VPS39-206ENST00000562662 HOXC9P31274 260 aa18.06■□□□□ 0.48
VPS39-206ENST00000562662 AMPHP49418 695 aa18.06■□□□□ 0.48
VPS39-206ENST00000562662 EIF4A2Q14240 407 aaKnown RBP18.06■□□□□ 0.48
VPS39-206ENST00000562662 CERKQ8TCT0 537 aa18.06■□□□□ 0.48
VPS39-206ENST00000562662 ABCC6O95255 1503 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms