RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 RGPD5Q99666 1765 aa13.71□□□□□ -0.22
CLK3-208ENST00000562626 A0A1W2PP64 1363 aa13.71□□□□□ -0.22
CLK3-208ENST00000562626 KIF7Q2M1P5 1343 aa13.7□□□□□ -0.22
CLK3-208ENST00000562626 ZEB1P37275 1124 aaPredicted RBP13.7□□□□□ -0.22
CLK3-208ENST00000562626 RGS17Q9UGC6 210 aaPredicted RBP13.7□□□□□ -0.22
CLK3-208ENST00000562626 SPATA31A3Q5VYP0 1347 aa13.69□□□□□ -0.22
CLK3-208ENST00000562626 LTN1O94822 1766 aa13.69□□□□□ -0.22
CLK3-208ENST00000562626 TMC1Q8TDI8 760 aa13.69□□□□□ -0.22
CLK3-208ENST00000562626 PUS7Q96PZ0 661 aaKnown RBP13.69□□□□□ -0.22
CLK3-208ENST00000562626 SBNO1A3KN83 1393 aa13.69□□□□□ -0.22
CLK3-208ENST00000562626 PSME1Q06323 249 aa13.68□□□□□ -0.22
CLK3-208ENST00000562626 POLR3GLQ9BT43 218 aa13.68□□□□□ -0.22
CLK3-208ENST00000562626 PLCH1Q4KWH8 1693 aa13.68□□□□□ -0.22
CLK3-208ENST00000562626 JCADQ9P266 1359 aa13.68□□□□□ -0.22
CLK3-208ENST00000562626 WASHC2AQ641Q2 1341 aa13.67□□□□□ -0.22
CLK3-208ENST00000562626 CCDC7Q96M83 1385 aa13.67□□□□□ -0.22
CLK3-208ENST00000562626 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
CLK3-208ENST00000562626 PLEKHG5O94827 1062 aa13.65□□□□□ -0.22
CLK3-208ENST00000562626 LRRC59Q96AG4 307 aaKnown RBP13.65□□□□□ -0.22
CLK3-208ENST00000562626 ZRANB1Q9UGI0 708 aa13.65□□□□□ -0.22
CLK3-208ENST00000562626 ANKRD36BQ8N2N9 1353 aa13.65□□□□□ -0.22
CLK3-208ENST00000562626 SLIT3O75094 1523 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 MAP2P11137 1827 aaKnown RBP13.64□□□□□ -0.23
CLK3-208ENST00000562626 COL18A1P39060 1754 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 NINLQ9Y2I6 1382 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 NUTM2GQ5VZR2 741 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 CABLES1Q8TDN4 633 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 CARD14Q9BXL6 1004 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
CLK3-208ENST00000562626 SLC24A1O60721 1099 aa13.63□□□□□ -0.23
CLK3-208ENST00000562626 PAK3O75914 559 aaPredicted RBP13.63□□□□□ -0.23
CLK3-208ENST00000562626 NRAPQ86VF7 1730 aa13.63□□□□□ -0.23
CLK3-208ENST00000562626 EDC4Q6P2E9 1401 aaKnown RBP13.63□□□□□ -0.23
CLK3-208ENST00000562626 CDCA8Q53HL2 280 aa13.62□□□□□ -0.23
CLK3-208ENST00000562626 LMOD2Q6P5Q4 547 aa13.62□□□□□ -0.23
CLK3-208ENST00000562626 NFAT5O94916 1531 aa13.61□□□□□ -0.23
CLK3-208ENST00000562626 NME9Q86XW9 330 aa13.61□□□□□ -0.23
CLK3-208ENST00000562626 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLK3-208ENST00000562626 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
CLK3-208ENST00000562626 RGPD2P0DJD1 1756 aa13.6□□□□□ -0.23
CLK3-208ENST00000562626 ARHGEF10O15013 1369 aa13.6□□□□□ -0.23
CLK3-208ENST00000562626 LMO7Q8WWI1 1683 aa13.6□□□□□ -0.23
CLK3-208ENST00000562626 NUTM2BA6NNL0 878 aaPredicted RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 NUTM2EB1AL46 878 aaPredicted RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 HDGFL2Q7Z4V5 671 aaPredicted RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 NUTM2AQ8IVF1 878 aaPredicted RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 TERF2IPQ9NYB0 399 aa13.6□□□□□ -0.23
CLK3-208ENST00000562626 NWD2Q9ULI1 1742 aa13.6□□□□□ -0.23
CLK3-208ENST00000562626 COL14A1Q05707 1796 aaKnown RBP13.6□□□□□ -0.23
CLK3-208ENST00000562626 BRD4O60885 1362 aaPredicted RBP13.59□□□□□ -0.23
CLK3-208ENST00000562626 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.59□□□□□ -0.23
CLK3-208ENST00000562626 OVOS2A0A0J9YW53 1432 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 OVOS2Q6IE36 1432 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 POTEAQ6S8J7 498 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 ABTB2Q8N961 1025 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 PANK3Q9H999 370 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 USP19O94966 1318 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 SPATA31A6Q5VVP1 1343 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
CLK3-208ENST00000562626 TTC21AQ8NDW8 1320 aa13.58□□□□□ -0.24
CLK3-208ENST00000562626 USP31Q70CQ4 1352 aa13.58□□□□□ -0.24
CLK3-208ENST00000562626 ADAMTS2O95450 1211 aa13.56□□□□□ -0.24
CLK3-208ENST00000562626 NLRP6P59044 892 aa13.55□□□□□ -0.24
CLK3-208ENST00000562626 FYB1O15117 783 aa13.54□□□□□ -0.24
CLK3-208ENST00000562626 FBLN1P23142 703 aa13.54□□□□□ -0.24
CLK3-208ENST00000562626 GGNBP2Q9H3C7 697 aa13.54□□□□□ -0.24
CLK3-208ENST00000562626 WNK3Q9BYP7 1800 aa13.54□□□□□ -0.24
CLK3-208ENST00000562626 PER1O15534 1290 aaPredicted RBP13.53□□□□□ -0.24
CLK3-208ENST00000562626 KIAA0232Q92628 1395 aa13.53□□□□□ -0.24
CLK3-208ENST00000562626 CAMTA1Q9Y6Y1 1673 aa13.53□□□□□ -0.24
CLK3-208ENST00000562626 SOX12O15370 315 aa13.52□□□□□ -0.25
CLK3-208ENST00000562626 NLRP13Q86W25 1043 aa13.52□□□□□ -0.25
CLK3-208ENST00000562626 UPF1Q92900 1129 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLK3-208ENST00000562626 SLIT2O94813 1529 aa13.52□□□□□ -0.25
CLK3-208ENST00000562626 ZC3H6P61129 1189 aaKnown RBP13.51□□□□□ -0.25
CLK3-208ENST00000562626 C8orf37Q96NL8 207 aa13.51□□□□□ -0.25
CLK3-208ENST00000562626 BRWD3Q6RI45 1802 aa13.5□□□□□ -0.25
CLK3-208ENST00000562626 BCL9LQ86UU0 1499 aa13.5□□□□□ -0.25
CLK3-208ENST00000562626 FAM83GA6ND36 823 aa13.5□□□□□ -0.25
CLK3-208ENST00000562626 GCP02774 474 aa13.5□□□□□ -0.25
CLK3-208ENST00000562626 CHRNA2Q15822 529 aa13.5□□□□□ -0.25
CLK3-208ENST00000562626 AMER1Q5JTC6 1135 aaPredicted RBP13.5□□□□□ -0.25
CLK3-208ENST00000562626 GLI3P10071 1580 aa13.49□□□□□ -0.25
CLK3-208ENST00000562626 CPDO75976 1380 aa13.49□□□□□ -0.25
CLK3-208ENST00000562626 HAP1P54257 671 aaPredicted RBP13.49□□□□□ -0.25
CLK3-208ENST00000562626 MEX3CQ5U5Q3 659 aaKnown RBP13.49□□□□□ -0.25
CLK3-208ENST00000562626 AFF2P51816 1311 aa13.48□□□□□ -0.25
CLK3-208ENST00000562626 CGNL1Q0VF96 1302 aa13.47□□□□□ -0.25
CLK3-208ENST00000562626 ZNF316A6NFI3 1004 aaPredicted RBP13.47□□□□□ -0.25
CLK3-208ENST00000562626 DDX10Q13206 875 aaKnown RBP13.47□□□□□ -0.25
CLK3-208ENST00000562626 COG3Q96JB2 828 aa13.47□□□□□ -0.25
CLK3-208ENST00000562626 SRCAPQ6ZRS2 3230 aa13.47□□□□□ -0.25
CLK3-208ENST00000562626 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
CLK3-208ENST00000562626 ABCC6O95255 1503 aa13.46□□□□□ -0.25
CLK3-208ENST00000562626 ZBTB7CA1YPR0 619 aa13.46□□□□□ -0.25
CLK3-208ENST00000562626 ARHGEF25Q86VW2 580 aa13.46□□□□□ -0.25
CLK3-208ENST00000562626 NGLY1Q96IV0 654 aa13.46□□□□□ -0.25
CLK3-208ENST00000562626 PRDM11Q9NQV5 511 aa13.46□□□□□ -0.25
CLK3-208ENST00000562626 COL5A2P05997 1499 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms