RNA–Protein interactions for RNA: ENST00000561960.5

NSMCE1-202, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE1, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-202ENST00000561960 ARHGEF28Q8N1W1 1705 aaKnown RBP17.33■□□□□ 0.36
NSMCE1-202ENST00000561960 PHRF1Q9P1Y6 1649 aaKnown RBP17.32■□□□□ 0.36
NSMCE1-202ENST00000561960 DLC1Q96QB1 1528 aa17.31■□□□□ 0.36
NSMCE1-202ENST00000561960 CHRNA2Q15822 529 aa17.31■□□□□ 0.36
NSMCE1-202ENST00000561960 THSD7AQ9UPZ6 1657 aa17.31■□□□□ 0.36
NSMCE1-202ENST00000561960 ITSN1Q15811 1721 aa17.3■□□□□ 0.36
NSMCE1-202ENST00000561960 BAG6P46379 1132 aa17.3■□□□□ 0.36
NSMCE1-202ENST00000561960 R3HDM1Q15032 1099 aaKnown RBP17.3■□□□□ 0.36
NSMCE1-202ENST00000561960 TULP4Q9NRJ4 1543 aa17.3■□□□□ 0.36
NSMCE1-202ENST00000561960 ANKARQ7Z5J8 1434 aa17.3■□□□□ 0.36
NSMCE1-202ENST00000561960 ACIN1Q9UKV3 1341 aaKnown RBP17.29■□□□□ 0.36
NSMCE1-202ENST00000561960 ONECUT3O60422 494 aaPredicted RBP17.29■□□□□ 0.36
NSMCE1-202ENST00000561960 HRCP23327 699 aa17.29■□□□□ 0.36
NSMCE1-202ENST00000561960 SIRT1Q96EB6 747 aa17.29■□□□□ 0.36
NSMCE1-202ENST00000561960 STRN4Q9NRL3 753 aa17.29■□□□□ 0.36
NSMCE1-202ENST00000561960 GPRASP1Q5JY77 1395 aa17.28■□□□□ 0.36
NSMCE1-202ENST00000561960 NGDNQ8NEJ9 315 aaKnown RBP17.28■□□□□ 0.36
NSMCE1-202ENST00000561960 USP35Q9P2H5 1018 aa17.28■□□□□ 0.36
NSMCE1-202ENST00000561960 EZH2Q15910 746 aaKnown RBP17.27■□□□□ 0.36
NSMCE1-202ENST00000561960 RAB3GAP2Q9H2M9 1393 aa17.27■□□□□ 0.35
NSMCE1-202ENST00000561960 SPATA31A5Q5VU36 1347 aa17.26■□□□□ 0.35
NSMCE1-202ENST00000561960 SPATA31A7Q8IWB4 1347 aa17.26■□□□□ 0.35
NSMCE1-202ENST00000561960 ZC3H6P61129 1189 aaKnown RBP17.26■□□□□ 0.35
NSMCE1-202ENST00000561960 DCAF11Q8TEB1 546 aa17.26■□□□□ 0.35
NSMCE1-202ENST00000561960 PRDM11Q9NQV5 511 aa17.26■□□□□ 0.35
NSMCE1-202ENST00000561960 TRIM37O94972 964 aa17.25■□□□□ 0.35
NSMCE1-202ENST00000561960 KIAA0232Q92628 1395 aa17.25■□□□□ 0.35
NSMCE1-202ENST00000561960 WASLO00401 505 aaPredicted RBP17.24■□□□□ 0.35
NSMCE1-202ENST00000561960 ATP7BP35670 1465 aa17.23■□□□□ 0.35
NSMCE1-202ENST00000561960 TOPAZ1Q8N9V7 1692 aa17.23■□□□□ 0.35
NSMCE1-202ENST00000561960 NUP188Q5SRE5 1749 aa17.22■□□□□ 0.35
NSMCE1-202ENST00000561960 RREB1Q92766 1687 aa17.2■□□□□ 0.34
NSMCE1-202ENST00000561960 NRKQ7Z2Y5 1582 aa17.2■□□□□ 0.34
NSMCE1-202ENST00000561960 ZBTB7CA1YPR0 619 aa17.2■□□□□ 0.34
NSMCE1-202ENST00000561960 NUDT16Q96DE0 195 aaKnown RBP17.19■□□□□ 0.34
NSMCE1-202ENST00000561960 SPATA31A1Q5TZJ5 1347 aa17.19■□□□□ 0.34
NSMCE1-202ENST00000561960 APBA3O96018 575 aa17.17■□□□□ 0.34
NSMCE1-202ENST00000561960 EIF3AQ14152 1382 aaKnown RBP17.16■□□□□ 0.34
NSMCE1-202ENST00000561960 CDK19Q9BWU1 502 aa17.16■□□□□ 0.34
NSMCE1-202ENST00000561960 CAMTA1Q9Y6Y1 1673 aa17.16■□□□□ 0.34
NSMCE1-202ENST00000561960 LARP1Q6PKG0 1096 aaKnown RBP17.15■□□□□ 0.34
NSMCE1-202ENST00000561960 ACEP12821 1306 aa17.15■□□□□ 0.34
NSMCE1-202ENST00000561960 LMO7Q8WWI1 1683 aa17.14■□□□□ 0.33
NSMCE1-202ENST00000561960 EVA1CP58658 441 aa17.14■□□□□ 0.33
NSMCE1-202ENST00000561960 CAMKK2Q96RR4 588 aa17.14■□□□□ 0.33
NSMCE1-202ENST00000561960 SSH2Q76I76 1423 aa17.13■□□□□ 0.33
NSMCE1-202ENST00000561960 RGPD5Q99666 1765 aa17.13■□□□□ 0.33
NSMCE1-202ENST00000561960 SBF2Q86WG5 1849 aa17.12■□□□□ 0.33
NSMCE1-202ENST00000561960 DISP2A7MBM2 1401 aa17.12■□□□□ 0.33
NSMCE1-202ENST00000561960 QRICH2Q9H0J4 1663 aa17.11■□□□□ 0.33
NSMCE1-202ENST00000561960 PDE3BQ13370 1112 aa17.11■□□□□ 0.33
NSMCE1-202ENST00000561960 ABTB2Q8N961 1025 aa17.11■□□□□ 0.33
NSMCE1-202ENST00000561960 NBPF8Q3BBV2 869 aa17.1■□□□□ 0.33
NSMCE1-202ENST00000561960 FAM196AQ6ZSG2 479 aa17.1■□□□□ 0.33
NSMCE1-202ENST00000561960 PARP4Q9UKK3 1724 aaKnown RBP17.1■□□□□ 0.33
NSMCE1-202ENST00000561960 NBPF1Q3BBV0 1214 aa17.09■□□□□ 0.33
NSMCE1-202ENST00000561960 WNK3Q9BYP7 1800 aa17.09■□□□□ 0.33
NSMCE1-202ENST00000561960 UTRNP46939 3433 aa17.09■□□□□ 0.33
NSMCE1-202ENST00000561960 LRRC37A3O60309 1634 aa17.08■□□□□ 0.32
NSMCE1-202ENST00000561960 CABP2Q9NPB3 220 aa17.08■□□□□ 0.32
NSMCE1-202ENST00000561960 PPIP5K1Q6PFW1 1433 aa17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 POLR3AO14802 1390 aaPredicted RBP17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 PTF1AQ7RTS3 328 aa17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 AKAP12Q02952 1782 aa17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 KIAA1210Q9ULL0 1709 aa17.06■□□□□ 0.32
NSMCE1-202ENST00000561960 PEAK1Q9H792 1746 aa17.05■□□□□ 0.32
NSMCE1-202ENST00000561960 TCP11L2Q8N4U5 519 aa17.05■□□□□ 0.32
NSMCE1-202ENST00000561960 COL5A2P05997 1499 aaPredicted RBP17.05■□□□□ 0.32
NSMCE1-202ENST00000561960 PIK3C2AO00443 1686 aa17.04■□□□□ 0.32
NSMCE1-202ENST00000561960 SOX12O15370 315 aa17.04■□□□□ 0.32
NSMCE1-202ENST00000561960 BARGINQ6ZT62 677 aa17.03■□□□□ 0.32
NSMCE1-202ENST00000561960 PPP1R1BQ9UD71 204 aaPredicted RBP17.03■□□□□ 0.32
NSMCE1-202ENST00000561960 CCDC61Q9Y6R9 512 aa17.03■□□□□ 0.32
NSMCE1-202ENST00000561960 USP19O94966 1318 aa17.02■□□□□ 0.32
NSMCE1-202ENST00000561960 GCP02774 474 aa17.02■□□□□ 0.32
NSMCE1-202ENST00000561960 PDGFDQ9GZP0 370 aaPredicted RBP17.02■□□□□ 0.32
NSMCE1-202ENST00000561960 COL18A1P39060 1754 aa17.02■□□□□ 0.31
NSMCE1-202ENST00000561960 YY1P25490 414 aa17.01■□□□□ 0.31
NSMCE1-202ENST00000561960 PLEKHG3A1L390 1219 aa17■□□□□ 0.31
NSMCE1-202ENST00000561960 NBPF14Q5TI25 921 aa17■□□□□ 0.31
NSMCE1-202ENST00000561960 ANO8Q9HCE9 1232 aaPredicted RBP17■□□□□ 0.31
NSMCE1-202ENST00000561960 MYOM1P52179 1685 aa17■□□□□ 0.31
NSMCE1-202ENST00000561960 CASZ1Q86V15 1759 aa17■□□□□ 0.31
NSMCE1-202ENST00000561960 KAT6BQ8WYB5 2073 aa16.99■□□□□ 0.31
NSMCE1-202ENST00000561960 CPDO75976 1380 aa16.99■□□□□ 0.31
NSMCE1-202ENST00000561960 CRB1P82279 1406 aa16.98■□□□□ 0.31
NSMCE1-202ENST00000561960 NLRP6P59044 892 aa16.98■□□□□ 0.31
NSMCE1-202ENST00000561960 NLRP13Q86W25 1043 aa16.98■□□□□ 0.31
NSMCE1-202ENST00000561960 CABP1Q9NZU7 370 aa16.98■□□□□ 0.31
NSMCE1-202ENST00000561960 PARD3Q8TEW0 1356 aa16.98■□□□□ 0.31
NSMCE1-202ENST00000561960 CENPJQ9HC77 1338 aaPredicted RBP16.97■□□□□ 0.31
NSMCE1-202ENST00000561960 TOM1L2Q6ZVM7 507 aa16.97■□□□□ 0.31
NSMCE1-202ENST00000561960 OVOS2A0A0G2JMS6 1433 aa16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 OVOS2A0A0J9YW53 1432 aa16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 OVOS2Q6IE36 1432 aa16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 AXIN2Q9Y2T1 843 aa16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 RGPD3A6NKT7 1758 aaPredicted RBP16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 RGPD4Q7Z3J3 1758 aa16.96■□□□□ 0.31
NSMCE1-202ENST00000561960 SLIT3O75094 1523 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms