RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 LCE2AQ5TA79 106 aaPredicted RBP10.18□□□□□ -0.78
PTPN9-202ENST00000561731 VARSP26640 1264 aaKnown RBP10.17□□□□□ -0.78
PTPN9-202ENST00000561731 TLL2Q9Y6L7 1015 aa10.17□□□□□ -0.78
PTPN9-202ENST00000561731 PLEKHG3A1L390 1219 aa10.16□□□□□ -0.78
PTPN9-202ENST00000561731 CAPN5O15484 640 aaPredicted RBP10.16□□□□□ -0.78
PTPN9-202ENST00000561731 CSPP1Q1MSJ5 1256 aa10.16□□□□□ -0.78
PTPN9-202ENST00000561731 CABLES1Q8TDN4 633 aa10.15□□□□□ -0.78
PTPN9-202ENST00000561731 NFX1Q12986 1120 aaKnown RBP10.14□□□□□ -0.79
PTPN9-202ENST00000561731 MYSM1Q5VVJ2 828 aa10.14□□□□□ -0.79
PTPN9-202ENST00000561731 MPNDQ8N594 471 aa10.14□□□□□ -0.79
PTPN9-202ENST00000561731 SLC24A3Q9HC58 644 aa10.14□□□□□ -0.79
PTPN9-202ENST00000561731 F12P00748 615 aaPredicted RBP10.13□□□□□ -0.79
PTPN9-202ENST00000561731 MAP10Q9P2G4 905 aa10.13□□□□□ -0.79
PTPN9-202ENST00000561731 NUTM2BA6NNL0 878 aaPredicted RBP10.12□□□□□ -0.79
PTPN9-202ENST00000561731 NUTM2EB1AL46 878 aaPredicted RBP10.12□□□□□ -0.79
PTPN9-202ENST00000561731 BMP1P13497 986 aa10.12□□□□□ -0.79
PTPN9-202ENST00000561731 TUSC1Q2TAM9 212 aa10.12□□□□□ -0.79
PTPN9-202ENST00000561731 NUTM2DQ5VT03 806 aaPredicted RBP10.12□□□□□ -0.79
PTPN9-202ENST00000561731 NUTM2AQ8IVF1 878 aaPredicted RBP10.12□□□□□ -0.79
PTPN9-202ENST00000561731 FAM174AQ8TBP5 190 aa10.12□□□□□ -0.79
PTPN9-202ENST00000561731 TSC1Q92574 1164 aa10.12□□□□□ -0.79
PTPN9-202ENST00000561731 LIMD1Q9UGP4 676 aa10.12□□□□□ -0.79
PTPN9-202ENST00000561731 NNTQ13423 1086 aa10.11□□□□□ -0.79
PTPN9-202ENST00000561731 TERTO14746 1132 aaKnown RBP10.1□□□□□ -0.79
PTPN9-202ENST00000561731 TRIM46Q7Z4K8 759 aa10.1□□□□□ -0.79
PTPN9-202ENST00000561731 QPCTQ16769 361 aa10.09□□□□□ -0.79
PTPN9-202ENST00000561731 PER1O15534 1290 aaPredicted RBP10.08□□□□□ -0.8
PTPN9-202ENST00000561731 LILRB3O75022 631 aa10.08□□□□□ -0.8
PTPN9-202ENST00000561731 HELBQ8NG08 1087 aaPredicted RBP10.08□□□□□ -0.8
PTPN9-202ENST00000561731 FOXJ1Q92949 421 aa10.08□□□□□ -0.8
PTPN9-202ENST00000561731 ADH1CP00326 375 aa10.07□□□□□ -0.8
PTPN9-202ENST00000561731 CLK2P49760 499 aaKnown RBP10.07□□□□□ -0.8
PTPN9-202ENST00000561731 AGERQ15109 404 aa10.07□□□□□ -0.8
PTPN9-202ENST00000561731 RSPH6AQ9H0K4 717 aa10.07□□□□□ -0.8
PTPN9-202ENST00000561731 WIPF1O43516 503 aa10.06□□□□□ -0.8
PTPN9-202ENST00000561731 ARID5BQ14865 1188 aa10.06□□□□□ -0.8
PTPN9-202ENST00000561731 BPHLQ86WA6 291 aaPredicted RBP10.06□□□□□ -0.8
PTPN9-202ENST00000561731 ARMC2Q8NEN0 867 aa10.06□□□□□ -0.8
PTPN9-202ENST00000561731 CDK15Q96Q40 435 aa10.06□□□□□ -0.8
PTPN9-202ENST00000561731 WDR4P57081 412 aaKnown RBP10.05□□□□□ -0.8
PTPN9-202ENST00000561731 TIMP2P16035 220 aa10.04□□□□□ -0.8
PTPN9-202ENST00000561731 INSM1Q01101 510 aaPredicted RBP10.03□□□□□ -0.8
PTPN9-202ENST00000561731 SCARF1Q14162 830 aa10.03□□□□□ -0.8
PTPN9-202ENST00000561731 RTL5Q5HYW3 569 aaPredicted RBP10.03□□□□□ -0.8
PTPN9-202ENST00000561731 NBPF14Q5TI25 921 aa10.03□□□□□ -0.8
PTPN9-202ENST00000561731 SLC16A10Q8TF71 515 aa10.03□□□□□ -0.8
PTPN9-202ENST00000561731 ZFP42Q96MM3 310 aa10.03□□□□□ -0.8
PTPN9-202ENST00000561731 NXF1Q9UBU9 619 aaKnown RBP10.03□□□□□ -0.8
PTPN9-202ENST00000561731 NR5A1Q13285 461 aa10.02□□□□□ -0.81
PTPN9-202ENST00000561731 MRPL14Q6P1L8 145 aaKnown RBP10.02□□□□□ -0.81
PTPN9-202ENST00000561731 C4orf48Q5BLP8 95 aa10.01□□□□□ -0.81
PTPN9-202ENST00000561731 POLR3EQ9NVU0 708 aa10.01□□□□□ -0.81
PTPN9-202ENST00000561731 LCE2CQ5TA81 110 aa10□□□□□ -0.81
PTPN9-202ENST00000561731 NPAS3Q8IXF0 933 aa10□□□□□ -0.81
PTPN9-202ENST00000561731 KLF16Q9BXK1 252 aaPredicted RBP10□□□□□ -0.81
PTPN9-202ENST00000561731 ZIC2O95409 532 aaPredicted RBP9.99□□□□□ -0.81
PTPN9-202ENST00000561731 SH3RF1Q7Z6J0 888 aa9.98□□□□□ -0.81
PTPN9-202ENST00000561731 PURBQ96QR8 312 aaKnown RBP9.98□□□□□ -0.81
PTPN9-202ENST00000561731 C1QTNF2Q9BXJ5 285 aa9.98□□□□□ -0.81
PTPN9-202ENST00000561731 STK17AQ9UEE5 414 aa9.98□□□□□ -0.81
PTPN9-202ENST00000561731 NR3C2P08235 984 aa9.97□□□□□ -0.81
PTPN9-202ENST00000561731 GPKOWQ92917 476 aaPredicted RBP eCLIP9.97□□□□□ -0.81
PTPN9-202ENST00000561731 GRM5P41594 1212 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 SH3BP5LQ7L8J4 393 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 IRF7Q92985 503 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 ITPKCQ96DU7 683 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 ZFAND3Q9H8U3 227 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 MAP4K5Q9Y4K4 846 aa9.96□□□□□ -0.82
PTPN9-202ENST00000561731 MAGEB6P1A0A0J9YX57 407 aa9.95□□□□□ -0.82
PTPN9-202ENST00000561731 TRMT44Q8IYL2 757 aaKnown RBP9.95□□□□□ -0.82
PTPN9-202ENST00000561731 FSHRP23945 695 aa9.94□□□□□ -0.82
PTPN9-202ENST00000561731 CTDSPL2Q05D32 466 aa9.94□□□□□ -0.82
PTPN9-202ENST00000561731 VASH1Q7L8A9 365 aaPredicted RBP9.94□□□□□ -0.82
PTPN9-202ENST00000561731 H3BM21 787 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 UPP2O95045 317 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 VEGFBP49765 207 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 SKIV2LQ15477 1246 aaKnown RBP9.93□□□□□ -0.82
PTPN9-202ENST00000561731 SH3D19Q5HYK7 790 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 DDRGK1Q96HY6 314 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 CARD14Q9BXL6 1004 aa9.93□□□□□ -0.82
PTPN9-202ENST00000561731 KDM4CQ9H3R0 1056 aa9.92□□□□□ -0.82
PTPN9-202ENST00000561731 ATP1B4Q9UN42 357 aaPredicted RBP9.92□□□□□ -0.82
PTPN9-202ENST00000561731 C6orf118Q5T5N4 469 aa9.91□□□□□ -0.82
PTPN9-202ENST00000561731 GPBP1L1Q9HC44 474 aaPredicted RBP9.91□□□□□ -0.82
PTPN9-202ENST00000561731 BMP2P12643 396 aa9.9□□□□□ -0.82
PTPN9-202ENST00000561731 GMPRP36959 345 aa9.9□□□□□ -0.82
PTPN9-202ENST00000561731 MEIOBQ8N635 442 aa9.9□□□□□ -0.82
PTPN9-202ENST00000561731 BCANQ96GW7 911 aa9.9□□□□□ -0.82
PTPN9-202ENST00000561731 SOBPA7XYQ1 873 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 MAN1A2O60476 641 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 ERFEQ4G0M1 354 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 PDXDC2PQ6P474 469 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 CCDC116Q8IYX3 515 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 LINC00528Q8N1L1 170 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 LRRN4Q8WUT4 740 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 ARHGAP9Q9BRR9 750 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 FAM117AQ9C073 453 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 FKBPLQ9UIM3 349 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 EMILIN1Q9Y6C2 1016 aa9.89□□□□□ -0.83
PTPN9-202ENST00000561731 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms