RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TRPM3Q9HCF6 1732 aaPredicted RBP16.99■□□□□ 0.31
USP3-220ENST00000561381 FAM83GA6ND36 823 aa16.98■□□□□ 0.31
USP3-220ENST00000561381 ZNF219Q9P2Y4 722 aaPredicted RBP16.98■□□□□ 0.31
USP3-220ENST00000561381 ARHGEF28Q8N1W1 1705 aaKnown RBP16.98■□□□□ 0.31
USP3-220ENST00000561381 PLCH1Q4KWH8 1693 aa16.97■□□□□ 0.31
USP3-220ENST00000561381 EIF3AQ14152 1382 aaKnown RBP16.97■□□□□ 0.31
USP3-220ENST00000561381 GPRASP1Q5JY77 1395 aa16.97■□□□□ 0.31
USP3-220ENST00000561381 EP400Q96L91 3159 aa16.96■□□□□ 0.31
USP3-220ENST00000561381 VPS72Q15906 364 aa16.96■□□□□ 0.31
USP3-220ENST00000561381 ALS2Q96Q42 1657 aa16.95■□□□□ 0.3
USP3-220ENST00000561381 SEPT12Q8IYM1 358 aa16.95■□□□□ 0.3
USP3-220ENST00000561381 NGDNQ8NEJ9 315 aaKnown RBP16.95■□□□□ 0.3
USP3-220ENST00000561381 CCDC9Q9Y3X0 531 aaKnown RBP16.95■□□□□ 0.3
USP3-220ENST00000561381 NWD2Q9ULI1 1742 aa16.94■□□□□ 0.3
USP3-220ENST00000561381 ABCB7O75027 752 aa16.94■□□□□ 0.3
USP3-220ENST00000561381 BRWD3Q6RI45 1802 aa16.93■□□□□ 0.3
USP3-220ENST00000561381 ATP7BP35670 1465 aa16.93■□□□□ 0.3
USP3-220ENST00000561381 PAK3O75914 559 aaPredicted RBP16.93■□□□□ 0.3
USP3-220ENST00000561381 NBPF1Q3BBV0 1214 aa16.93■□□□□ 0.3
USP3-220ENST00000561381 NUDT16Q96DE0 195 aaKnown RBP16.93■□□□□ 0.3
USP3-220ENST00000561381 POTEHQ6S545 545 aa16.91■□□□□ 0.3
USP3-220ENST00000561381 CCDC125Q86Z20 511 aa16.91■□□□□ 0.3
USP3-220ENST00000561381 CDK19Q9BWU1 502 aa16.91■□□□□ 0.3
USP3-220ENST00000561381 BTG4Q9NY30 223 aa16.91■□□□□ 0.3
USP3-220ENST00000561381 ONECUT3O60422 494 aaPredicted RBP16.9■□□□□ 0.3
USP3-220ENST00000561381 NRAPQ86VF7 1730 aa16.9■□□□□ 0.3
USP3-220ENST00000561381 CRYBG1Q9Y4K1 1723 aa16.89■□□□□ 0.29
USP3-220ENST00000561381 ITSN1Q15811 1721 aa16.88■□□□□ 0.29
USP3-220ENST00000561381 KIAA1210Q9ULL0 1709 aa16.88■□□□□ 0.29
USP3-220ENST00000561381 BLMP54132 1417 aaPredicted RBP16.87■□□□□ 0.29
USP3-220ENST00000561381 COL14A1Q05707 1796 aaKnown RBP16.87■□□□□ 0.29
USP3-220ENST00000561381 MYCNP04198 464 aaPredicted RBP16.87■□□□□ 0.29
USP3-220ENST00000561381 FAM98CQ17RN3 349 aaKnown RBP16.87■□□□□ 0.29
USP3-220ENST00000561381 NUTM2GQ5VZR2 741 aa16.87■□□□□ 0.29
USP3-220ENST00000561381 KRT27Q7Z3Y8 459 aa16.87■□□□□ 0.29
USP3-220ENST00000561381 DEFB132Q7Z7B7 95 aa16.87■□□□□ 0.29
USP3-220ENST00000561381 A0A0G2JS52 829 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 MYT1Q01538 1121 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 PRDM11Q9NQV5 511 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 ZRANB1Q9UGI0 708 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 CCDC61Q9Y6R9 512 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 ACEP12821 1306 aa16.86■□□□□ 0.29
USP3-220ENST00000561381 TOPAZ1Q8N9V7 1692 aa16.85■□□□□ 0.29
USP3-220ENST00000561381 CHRNA2Q15822 529 aa16.85■□□□□ 0.29
USP3-220ENST00000561381 NBPF8Q3BBV2 869 aa16.85■□□□□ 0.29
USP3-220ENST00000561381 POLR3AO14802 1390 aaPredicted RBP16.85■□□□□ 0.29
USP3-220ENST00000561381 KIAA0232Q92628 1395 aa16.84■□□□□ 0.29
USP3-220ENST00000561381 PLEKHG3A1L390 1219 aa16.83■□□□□ 0.28
USP3-220ENST00000561381 SPATA31A5Q5VU36 1347 aa16.83■□□□□ 0.28
USP3-220ENST00000561381 SPATA31A7Q8IWB4 1347 aa16.83■□□□□ 0.28
USP3-220ENST00000561381 L3MBTL2Q969R5 705 aa16.83■□□□□ 0.28
USP3-220ENST00000561381 CENPJQ9HC77 1338 aaPredicted RBP16.82■□□□□ 0.28
USP3-220ENST00000561381 ZC3H6P61129 1189 aaKnown RBP16.82■□□□□ 0.28
USP3-220ENST00000561381 SIN3AQ96ST3 1273 aa16.82■□□□□ 0.28
USP3-220ENST00000561381 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
USP3-220ENST00000561381 SRCAPQ6ZRS2 3230 aa16.81■□□□□ 0.28
USP3-220ENST00000561381 SRPK2P78362 688 aaKnown RBP16.81■□□□□ 0.28
USP3-220ENST00000561381 SF3B2Q13435 895 aaKnown RBP16.81■□□□□ 0.28
USP3-220ENST00000561381 FAM182BQ5T319 152 aa16.81■□□□□ 0.28
USP3-220ENST00000561381 CABP2Q9NPB3 220 aa16.81■□□□□ 0.28
USP3-220ENST00000561381 STRN4Q9NRL3 753 aa16.8■□□□□ 0.28
USP3-220ENST00000561381 PPIP5K1Q6PFW1 1433 aa16.79■□□□□ 0.28
USP3-220ENST00000561381 ABTB2Q8N961 1025 aa16.78■□□□□ 0.28
USP3-220ENST00000561381 SPATA31A1Q5TZJ5 1347 aa16.77■□□□□ 0.28
USP3-220ENST00000561381 NEUROD1Q13562 356 aa16.77■□□□□ 0.28
USP3-220ENST00000561381 QRICH2Q9H0J4 1663 aa16.77■□□□□ 0.28
USP3-220ENST00000561381 THSD7AQ9UPZ6 1657 aa16.77■□□□□ 0.28
USP3-220ENST00000561381 NRKQ7Z2Y5 1582 aa16.77■□□□□ 0.27
USP3-220ENST00000561381 USP19O94966 1318 aa16.75■□□□□ 0.27
USP3-220ENST00000561381 FOXD4L1Q9NU39 408 aa16.75■□□□□ 0.27
USP3-220ENST00000561381 CABP1Q9NZU7 370 aa16.75■□□□□ 0.27
USP3-220ENST00000561381 USP35Q9P2H5 1018 aa16.75■□□□□ 0.27
USP3-220ENST00000561381 CAMTA1Q9Y6Y1 1673 aa16.74■□□□□ 0.27
USP3-220ENST00000561381 SSH2Q76I76 1423 aa16.73■□□□□ 0.27
USP3-220ENST00000561381 BAG6P46379 1132 aa16.73■□□□□ 0.27
USP3-220ENST00000561381 EVA1CP58658 441 aa16.73■□□□□ 0.27
USP3-220ENST00000561381 LARP1Q6PKG0 1096 aaKnown RBP16.73■□□□□ 0.27
USP3-220ENST00000561381 CPDO75976 1380 aa16.73■□□□□ 0.27
USP3-220ENST00000561381 TRPM1Q7Z4N2 1603 aa16.73■□□□□ 0.27
USP3-220ENST00000561381 GCP02774 474 aa16.72■□□□□ 0.27
USP3-220ENST00000561381 EN1Q05925 392 aaPredicted RBP16.72■□□□□ 0.27
USP3-220ENST00000561381 NLRP13Q86W25 1043 aa16.72■□□□□ 0.27
USP3-220ENST00000561381 USP6P35125 1406 aa16.71■□□□□ 0.27
USP3-220ENST00000561381 ROCK2O75116 1388 aaKnown RBP16.71■□□□□ 0.27
USP3-220ENST00000561381 LMO7Q8WWI1 1683 aa16.71■□□□□ 0.27
USP3-220ENST00000561381 EVC2Q86UK5 1308 aa16.7■□□□□ 0.26
USP3-220ENST00000561381 PSDA5PKW4 1024 aaPredicted RBP16.69■□□□□ 0.26
USP3-220ENST00000561381 NLRP6P59044 892 aa16.69■□□□□ 0.26
USP3-220ENST00000561381 BARGINQ6ZT62 677 aa16.69■□□□□ 0.26
USP3-220ENST00000561381 RGPD1P0DJD0 1748 aa16.69■□□□□ 0.26
USP3-220ENST00000561381 BRD4O60885 1362 aaPredicted RBP16.68■□□□□ 0.26
USP3-220ENST00000561381 ZBTB7CA1YPR0 619 aa16.68■□□□□ 0.26
USP3-220ENST00000561381 TRIM37O94972 964 aa16.68■□□□□ 0.26
USP3-220ENST00000561381 TNS1Q9HBL0 1735 aaKnown RBP16.67■□□□□ 0.26
USP3-220ENST00000561381 FAM196AQ6ZSG2 479 aa16.67■□□□□ 0.26
USP3-220ENST00000561381 TCP11L2Q8N4U5 519 aa16.67■□□□□ 0.26
USP3-220ENST00000561381 COL5A2P05997 1499 aaPredicted RBP16.67■□□□□ 0.26
USP3-220ENST00000561381 PIK3C2AO00443 1686 aa16.65■□□□□ 0.26
USP3-220ENST00000561381 DISP2A7MBM2 1401 aa16.65■□□□□ 0.26
USP3-220ENST00000561381 EZH2Q15910 746 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms