RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	UPP2	O95045	317 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	CLCN1	P35523	988 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	RASSF7	Q02833	373 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	KCNH2	Q12809	1159 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	FAM174A	Q8TBP5	190 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	GPCPD1	Q9NPB8	672 aa		5.82	□□□□□ -1.48
SPG11-223	ENST00000560858	PPFIA3	O75145	1194 aa		5.81	□□□□□ -1.48
SPG11-223	ENST00000560858	GSK3A	P49840	483 aa		5.8	□□□□□ -1.48
SPG11-223	ENST00000560858	ARID5B	Q14865	1188 aa		5.8	□□□□□ -1.48
SPG11-223	ENST00000560858	KLF16	Q9BXK1	252 aa	Predicted RBP	5.8	□□□□□ -1.48
SPG11-223	ENST00000560858	FAM217B	Q9NTX9	383 aa	Predicted RBP	5.8	□□□□□ -1.48
SPG11-223	ENST00000560858	SPDYE5	A6NIY4	337 aa		5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	TULP1	O00294	542 aa	Predicted RBP	5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	ZIC2	O95409	532 aa	Predicted RBP	5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	BMP2	P12643	396 aa		5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	C6orf118	Q5T5N4	469 aa		5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	PCDHGC3	Q9UN70	934 aa		5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	ADAMTS8	Q9UP79	889 aa		5.79	□□□□□ -1.48
SPG11-223	ENST00000560858	SPTLC1	O15269	473 aa		5.78	□□□□□ -1.48
SPG11-223	ENST00000560858	NR5A1	Q13285	461 aa		5.78	□□□□□ -1.48
SPG11-223	ENST00000560858	DESI1	Q6ICB0	168 aa		5.78	□□□□□ -1.48
SPG11-223	ENST00000560858	PRR7	Q8TB68	274 aa		5.78	□□□□□ -1.48
SPG11-223	ENST00000560858	CDK15	Q96Q40	435 aa		5.78	□□□□□ -1.48
SPG11-223	ENST00000560858	CTH	P32929	405 aa		5.77	□□□□□ -1.49
SPG11-223	ENST00000560858	IGHA1	P01876	353 aa		5.76	□□□□□ -1.49
SPG11-223	ENST00000560858	ITPKC	Q96DU7	683 aa		5.76	□□□□□ -1.49
SPG11-223	ENST00000560858	CNTNAP3B	Q96NU0	1288 aa		5.76	□□□□□ -1.49
SPG11-223	ENST00000560858	CNTNAP3	Q9BZ76	1288 aa		5.76	□□□□□ -1.49
SPG11-223	ENST00000560858	ZFAND3	Q9H8U3	227 aa		5.76	□□□□□ -1.49
SPG11-223	ENST00000560858	MTMR2	Q13614	643 aa		5.75	□□□□□ -1.49
SPG11-223	ENST00000560858	AGER	Q15109	404 aa		5.75	□□□□□ -1.49
SPG11-223	ENST00000560858	CCDC102A	Q96A19	550 aa		5.75	□□□□□ -1.49
SPG11-223	ENST00000560858	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	GPAT2	Q6NUI2	795 aa		5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	LINC00528	Q8N1L1	170 aa		5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	SPIRE2	Q8WWL2	714 aa		5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	TSEN34	Q9BSV6	310 aa	Known RBP	5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	SOS2	Q07890	1332 aa	Predicted RBP	5.74	□□□□□ -1.49
SPG11-223	ENST00000560858	NDUFV2	P19404	249 aa		5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	SSTR3	P32745	418 aa	Predicted RBP	5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	FOXK2	Q01167	660 aa		5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	LYPD8	Q6UX82	237 aa		5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	BPHL	Q86WA6	291 aa	Predicted RBP	5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	SVOP	Q8N4V2	548 aa		5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	5.73	□□□□□ -1.49
SPG11-223	ENST00000560858	MOXD2P	A6NHM9	499 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	NR3C2	P08235	984 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	GRM5	P41594	1212 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	MARS	P56192	900 aa	Known RBP	5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	MEIOB	Q8N635	442 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	GPR161	Q8N6U8	529 aa	Known RBP	5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	FOXJ1	Q92949	421 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	COL25A1	Q9BXS0	654 aa	Predicted RBP	5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	DNMT3L	Q9UJW3	386 aa		5.72	□□□□□ -1.49
SPG11-223	ENST00000560858	TTLL8	A6PVC2	850 aa		5.71	□□□□□ -1.5
SPG11-223	ENST00000560858	IRS1	P35568	1242 aa		5.71	□□□□□ -1.5
SPG11-223	ENST00000560858	KRT76	Q01546	638 aa		5.71	□□□□□ -1.5
SPG11-223	ENST00000560858	KANK3	Q6NY19	840 aa		5.71	□□□□□ -1.5
SPG11-223	ENST00000560858	PTS	Q03393	145 aa		5.7	□□□□□ -1.5
SPG11-223	ENST00000560858	ZNF385C	Q66K41	422 aa	Predicted RBP	5.7	□□□□□ -1.5
SPG11-223	ENST00000560858	NANOS1	Q8WY41	292 aa	Known RBP	5.7	□□□□□ -1.5
SPG11-223	ENST00000560858	SCARF2	Q96GP6	870 aa	Predicted RBP	5.7	□□□□□ -1.5
SPG11-223	ENST00000560858	GJA5	P36382	358 aa		5.69	□□□□□ -1.5
SPG11-223	ENST00000560858	DIXDC1	Q155Q3	683 aa		5.69	□□□□□ -1.5
SPG11-223	ENST00000560858	EMILIN1	Q9Y6C2	1016 aa		5.69	□□□□□ -1.5
SPG11-223	ENST00000560858	SLURP2	P0DP57	97 aa		5.68	□□□□□ -1.5
SPG11-223	ENST00000560858	CCDC155	Q8N6L0	562 aa		5.68	□□□□□ -1.5
SPG11-223	ENST00000560858	ARMC2	Q8NEN0	867 aa		5.68	□□□□□ -1.5
SPG11-223	ENST00000560858	FIGNL2	A6NMB9	653 aa		5.67	□□□□□ -1.5
SPG11-223	ENST00000560858	VASH1	Q7L8A9	365 aa	Predicted RBP	5.67	□□□□□ -1.5
SPG11-223	ENST00000560858	MAP10	Q9P2G4	905 aa		5.67	□□□□□ -1.5
SPG11-223	ENST00000560858	ARHGEF15	O94989	841 aa		5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	F12	P00748	615 aa	Predicted RBP	5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	FSHR	P23945	695 aa		5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	TTLL12	Q14166	644 aa	Predicted RBP	5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	C4orf48	Q5BLP8	95 aa		5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	RNFT1	Q5M7Z0	435 aa		5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	SV2A	Q7L0J3	742 aa		5.66	□□□□□ -1.5
SPG11-223	ENST00000560858	CCDC116	Q8IYX3	515 aa		5.65	□□□□□ -1.5
SPG11-223	ENST00000560858	VWA5B2	Q8N398	1253 aa		5.65	□□□□□ -1.5
SPG11-223	ENST00000560858	ZBTB3	Q9H5J0	574 aa		5.65	□□□□□ -1.5
SPG11-223	ENST00000560858	ENAM	Q9NRM1	1142 aa		5.65	□□□□□ -1.5
SPG11-223	ENST00000560858	MAP4K5	Q9Y4K4	846 aa		5.65	□□□□□ -1.5
SPG11-223	ENST00000560858	CDC14C	A4D256	554 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	CFAP99	D6REC4	459 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	ITGA6	P23229	1130 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	HRC	P23327	699 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	MAP3K10	Q02779	954 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	RSBN1L	Q6PCB5	846 aa	Predicted RBP	5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	WHAMM	Q8TF30	809 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	BEGAIN	Q9BUH8	593 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	PGPEP1	Q9NXJ5	209 aa		5.64	□□□□□ -1.51
SPG11-223	ENST00000560858	SLC35F4	A4IF30	521 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	MSTN	O14793	375 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	SPINT1	O43278	529 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	PLCB2	Q00722	1185 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	NBPF14	Q5TI25	921 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	PRPF38B	Q5VTL8	546 aa	Known RBP	5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	TBC1D2	Q9BYX2	928 aa		5.63	□□□□□ -1.51
SPG11-223	ENST00000560858	PCDHB15	Q9Y5E8	787 aa		5.63	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms