RNA–Protein interactions for RNA: ENST00000560856.5

SNRPA1-213, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 4

Gene SNRPA1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-213ENST00000560856 ZNF772Q68DY9 489 aaPredicted RBP21.52■■□□□ 1.04
SNRPA1-213ENST00000560856 NGLY1Q96IV0 654 aa21.52■■□□□ 1.04
SNRPA1-213ENST00000560856 USP6P35125 1406 aa21.52■■□□□ 1.04
SNRPA1-213ENST00000560856 CPSF1Q10570 1443 aaKnown RBP21.51■■□□□ 1.03
SNRPA1-213ENST00000560856 BRD4O60885 1362 aaPredicted RBP21.5■■□□□ 1.03
SNRPA1-213ENST00000560856 SLC24A1O60721 1099 aa21.5■■□□□ 1.03
SNRPA1-213ENST00000560856 PLEKHG5O94827 1062 aa21.49■■□□□ 1.03
SNRPA1-213ENST00000560856 ABCA3Q99758 1704 aa21.49■■□□□ 1.03
SNRPA1-213ENST00000560856 CD163L1Q9NR16 1453 aa21.48■■□□□ 1.03
SNRPA1-213ENST00000560856 ZNF692Q9BU19 519 aaPredicted RBP21.48■■□□□ 1.03
SNRPA1-213ENST00000560856 SLC12A5Q9H2X9 1139 aa21.48■■□□□ 1.03
SNRPA1-213ENST00000560856 MARF1Q9Y4F3 1742 aaKnown RBP21.48■■□□□ 1.03
SNRPA1-213ENST00000560856 CRYBG1Q9Y4K1 1723 aa21.47■■□□□ 1.03
SNRPA1-213ENST00000560856 BCL9LQ86UU0 1499 aa21.46■■□□□ 1.03
SNRPA1-213ENST00000560856 NUTM2GQ5VZR2 741 aa21.46■■□□□ 1.03
SNRPA1-213ENST00000560856 ABTB2Q8N961 1025 aa21.46■■□□□ 1.03
SNRPA1-213ENST00000560856 SLIT2O94813 1529 aa21.45■■□□□ 1.02
SNRPA1-213ENST00000560856 USP21Q9UK80 565 aa21.45■■□□□ 1.02
SNRPA1-213ENST00000560856 AKAP12Q02952 1782 aa21.45■■□□□ 1.02
SNRPA1-213ENST00000560856 FAM83GA6ND36 823 aa21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 HAP1P54257 671 aaPredicted RBP21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 TMF1P82094 1093 aa21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 QTRT2Q9H974 415 aaKnown RBP21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 USP19O94966 1318 aa21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 TTC21BQ7Z4L5 1316 aa21.44■■□□□ 1.02
SNRPA1-213ENST00000560856 TMC1Q8TDI8 760 aa21.43■■□□□ 1.02
SNRPA1-213ENST00000560856 KTN1Q86UP2 1357 aaKnown RBP21.42■■□□□ 1.02
SNRPA1-213ENST00000560856 HSPA5P11021 654 aaKnown RBP21.41■■□□□ 1.02
SNRPA1-213ENST00000560856 NLRP13Q86W25 1043 aa21.41■■□□□ 1.02
SNRPA1-213ENST00000560856 ATRNO75882 1429 aa21.4■■□□□ 1.02
SNRPA1-213ENST00000560856 EIF4G2P78344 907 aaKnown RBP eCLIP21.4■■□□□ 1.02
SNRPA1-213ENST00000560856 NRKQ7Z2Y5 1582 aa21.4■■□□□ 1.02
SNRPA1-213ENST00000560856 NINLQ9Y2I6 1382 aa21.39■■□□□ 1.02
SNRPA1-213ENST00000560856 TTC21AQ8NDW8 1320 aa21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 MON2Q7Z3U7 1717 aa21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 SOCS7O14512 581 aa21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 RXRBP28702 533 aa21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 UNC5CLQ8IV45 518 aa21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 TRPC5Q9UL62 973 aaPredicted RBP21.39■■□□□ 1.01
SNRPA1-213ENST00000560856 A0A1W2PP64 1363 aa21.38■■□□□ 1.01
SNRPA1-213ENST00000560856 PIK3C2AO00443 1686 aa21.38■■□□□ 1.01
SNRPA1-213ENST00000560856 PHRF1Q9P1Y6 1649 aaKnown RBP21.38■■□□□ 1.01
SNRPA1-213ENST00000560856 NLRP6P59044 892 aa21.38■■□□□ 1.01
SNRPA1-213ENST00000560856 RBM6P78332 1123 aaKnown RBP21.37■■□□□ 1.01
SNRPA1-213ENST00000560856 HDGFL2Q7Z4V5 671 aaPredicted RBP21.37■■□□□ 1.01
SNRPA1-213ENST00000560856 TERF2IPQ9NYB0 399 aa21.37■■□□□ 1.01
SNRPA1-213ENST00000560856 KIAA0232Q92628 1395 aa21.36■■□□□ 1.01
SNRPA1-213ENST00000560856 GCP02774 474 aa21.36■■□□□ 1.01
SNRPA1-213ENST00000560856 ZC3H6P61129 1189 aaKnown RBP21.36■■□□□ 1.01
SNRPA1-213ENST00000560856 CDCA8Q53HL2 280 aa21.36■■□□□ 1.01
SNRPA1-213ENST00000560856 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.35■■□□□ 1.01
SNRPA1-213ENST00000560856 SLIT3O75094 1523 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 CDK12Q9NYV4 1490 aaPredicted RBP21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 PRDM11Q9NQV5 511 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 ZRANB1Q9UGI0 708 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 EDC4Q6P2E9 1401 aaKnown RBP21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 CPDO75976 1380 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 USP31Q70CQ4 1352 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 PLCH1Q4KWH8 1693 aa21.34■■□□□ 1.01
SNRPA1-213ENST00000560856 COL14A1Q05707 1796 aaKnown RBP21.33■■□□□ 1.01
SNRPA1-213ENST00000560856 NWD2Q9ULI1 1742 aa21.33■■□□□ 1.01
SNRPA1-213ENST00000560856 CHRNA2Q15822 529 aa21.33■■□□□ 1.01
SNRPA1-213ENST00000560856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.33■■□□□ 1.01
SNRPA1-213ENST00000560856 BTG4Q9NY30 223 aa21.33■■□□□ 1.01
SNRPA1-213ENST00000560856 ANKRD36BQ8N2N9 1353 aa21.33■■□□□ 1
SNRPA1-213ENST00000560856 VPS72Q15906 364 aa21.32■■□□□ 1
SNRPA1-213ENST00000560856 NME9Q86XW9 330 aa21.32■■□□□ 1
SNRPA1-213ENST00000560856 GJD4Q96KN9 370 aaPredicted RBP21.32■■□□□ 1
SNRPA1-213ENST00000560856 NRAPQ86VF7 1730 aa21.3■■□□□ 1
SNRPA1-213ENST00000560856 C11orf95C9JLR9 678 aaPredicted RBP21.29■■□□□ 1
SNRPA1-213ENST00000560856 RGS12O14924 1447 aa21.29■■□□□ 1
SNRPA1-213ENST00000560856 GLI3P10071 1580 aa21.28■■□□□ 1
SNRPA1-213ENST00000560856 MYOM1P52179 1685 aa21.28■■□□□ 1
SNRPA1-213ENST00000560856 USP54Q70EL1 1684 aa21.28■■□□□ 1
SNRPA1-213ENST00000560856 ARHGEF25Q86VW2 580 aa21.27■■□□□ 1
SNRPA1-213ENST00000560856 LMO7Q8WWI1 1683 aa21.26■□□□□ 0.99
SNRPA1-213ENST00000560856 CAMTA1Q9Y6Y1 1673 aa21.26■□□□□ 0.99
SNRPA1-213ENST00000560856 CARD14Q9BXL6 1004 aa21.26■□□□□ 0.99
SNRPA1-213ENST00000560856 NFAT5O94916 1531 aa21.25■□□□□ 0.99
SNRPA1-213ENST00000560856 OVOS2A0A0J9YW53 1432 aa21.25■□□□□ 0.99
SNRPA1-213ENST00000560856 OVOS2Q6IE36 1432 aa21.25■□□□□ 0.99
SNRPA1-213ENST00000560856 KCNH5Q8NCM2 988 aa21.25■□□□□ 0.99
SNRPA1-213ENST00000560856 AATKQ6ZMQ8 1374 aa21.24■□□□□ 0.99
SNRPA1-213ENST00000560856 ONECUT3O60422 494 aaPredicted RBP21.23■□□□□ 0.99
SNRPA1-213ENST00000560856 SPATA31A5Q5VU36 1347 aa21.23■□□□□ 0.99
SNRPA1-213ENST00000560856 SPATA31A7Q8IWB4 1347 aa21.23■□□□□ 0.99
SNRPA1-213ENST00000560856 COL18A1P39060 1754 aa21.23■□□□□ 0.99
SNRPA1-213ENST00000560856 FYB1O15117 783 aa21.22■□□□□ 0.99
SNRPA1-213ENST00000560856 SOX12O15370 315 aa21.21■□□□□ 0.99
SNRPA1-213ENST00000560856 AXIN2Q9Y2T1 843 aa21.21■□□□□ 0.99
SNRPA1-213ENST00000560856 POLR3GLQ9BT43 218 aa21.2■□□□□ 0.98
SNRPA1-213ENST00000560856 STRN4Q9NRL3 753 aa21.2■□□□□ 0.98
SNRPA1-213ENST00000560856 CCDC9Q9Y3X0 531 aaKnown RBP21.2■□□□□ 0.98
SNRPA1-213ENST00000560856 COL5A2P05997 1499 aaPredicted RBP21.19■□□□□ 0.98
SNRPA1-213ENST00000560856 ZBTB7CA1YPR0 619 aa21.18■□□□□ 0.98
SNRPA1-213ENST00000560856 LARP1Q6PKG0 1096 aaKnown RBP21.18■□□□□ 0.98
SNRPA1-213ENST00000560856 SPATA31A1Q5TZJ5 1347 aa21.18■□□□□ 0.98
SNRPA1-213ENST00000560856 COG3Q96JB2 828 aa21.17■□□□□ 0.98
SNRPA1-213ENST00000560856 GGNBP2Q9H3C7 697 aa21.17■□□□□ 0.98
SNRPA1-213ENST00000560856 NSD3Q9BZ95 1437 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms