RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRPM3Q9HCF6 1732 aaPredicted RBP14.68□□□□□ -0.06
LDLR-214ENST00000560628 KIAA1210Q9ULL0 1709 aa14.68□□□□□ -0.06
LDLR-214ENST00000560628 GLI3P10071 1580 aa14.68□□□□□ -0.06
LDLR-214ENST00000560628 A0A0G2JS52 829 aa14.67□□□□□ -0.06
LDLR-214ENST00000560628 ZC3H6P61129 1189 aaKnown RBP14.67□□□□□ -0.06
LDLR-214ENST00000560628 MYT1Q01538 1121 aa14.67□□□□□ -0.06
LDLR-214ENST00000560628 CHRNA2Q15822 529 aa14.67□□□□□ -0.06
LDLR-214ENST00000560628 PRDM11Q9NQV5 511 aa14.67□□□□□ -0.06
LDLR-214ENST00000560628 ONECUT3O60422 494 aaPredicted RBP14.66□□□□□ -0.06
LDLR-214ENST00000560628 FAM98CQ17RN3 349 aaKnown RBP14.66□□□□□ -0.06
LDLR-214ENST00000560628 ABTB2Q8N961 1025 aa14.66□□□□□ -0.06
LDLR-214ENST00000560628 ALS2Q96Q42 1657 aa14.65□□□□□ -0.06
LDLR-214ENST00000560628 POLR3AO14802 1390 aaPredicted RBP14.65□□□□□ -0.06
LDLR-214ENST00000560628 CCDC125Q86Z20 511 aa14.65□□□□□ -0.06
LDLR-214ENST00000560628 CABP1Q9NZU7 370 aa14.65□□□□□ -0.06
LDLR-214ENST00000560628 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.65□□□□□ -0.06
LDLR-214ENST00000560628 ABCA3Q99758 1704 aa14.64□□□□□ -0.07
LDLR-214ENST00000560628 KIAA0232Q92628 1395 aa14.64□□□□□ -0.07
LDLR-214ENST00000560628 KRT27Q7Z3Y8 459 aa14.64□□□□□ -0.07
LDLR-214ENST00000560628 ROCK2O75116 1388 aaKnown RBP14.63□□□□□ -0.07
LDLR-214ENST00000560628 STRN4Q9NRL3 753 aa14.63□□□□□ -0.07
LDLR-214ENST00000560628 PPIP5K1Q6PFW1 1433 aa14.63□□□□□ -0.07
LDLR-214ENST00000560628 PLCH1Q4KWH8 1693 aa14.62□□□□□ -0.07
LDLR-214ENST00000560628 SPATA31A5Q5VU36 1347 aa14.62□□□□□ -0.07
LDLR-214ENST00000560628 EVC2Q86UK5 1308 aa14.62□□□□□ -0.07
LDLR-214ENST00000560628 SPATA31A7Q8IWB4 1347 aa14.62□□□□□ -0.07
LDLR-214ENST00000560628 ITSN1Q15811 1721 aa14.61□□□□□ -0.07
LDLR-214ENST00000560628 NWD2Q9ULI1 1742 aa14.61□□□□□ -0.07
LDLR-214ENST00000560628 EVA1CP58658 441 aa14.61□□□□□ -0.07
LDLR-214ENST00000560628 FAM182BQ5T319 152 aa14.6□□□□□ -0.07
LDLR-214ENST00000560628 DEFB132Q7Z7B7 95 aa14.6□□□□□ -0.07
LDLR-214ENST00000560628 NLRP13Q86W25 1043 aa14.6□□□□□ -0.07
LDLR-214ENST00000560628 ZBTB7CA1YPR0 619 aa14.59□□□□□ -0.07
LDLR-214ENST00000560628 GCP02774 474 aa14.59□□□□□ -0.07
LDLR-214ENST00000560628 SF3B2Q13435 895 aaKnown RBP14.59□□□□□ -0.07
LDLR-214ENST00000560628 USP35Q9P2H5 1018 aa14.59□□□□□ -0.07
LDLR-214ENST00000560628 ZRANB1Q9UGI0 708 aa14.59□□□□□ -0.07
LDLR-214ENST00000560628 COL14A1Q05707 1796 aaKnown RBP14.59□□□□□ -0.07
LDLR-214ENST00000560628 BRWD3Q6RI45 1802 aa14.59□□□□□ -0.07
LDLR-214ENST00000560628 NLRP6P59044 892 aa14.58□□□□□ -0.08
LDLR-214ENST00000560628 TOPAZ1Q8N9V7 1692 aa14.58□□□□□ -0.08
LDLR-214ENST00000560628 BLMP54132 1417 aaPredicted RBP14.58□□□□□ -0.08
LDLR-214ENST00000560628 TRIM26Q12899 539 aaPredicted RBP14.57□□□□□ -0.08
LDLR-214ENST00000560628 CARD11Q9BXL7 1154 aa14.57□□□□□ -0.08
LDLR-214ENST00000560628 QRICH2Q9H0J4 1663 aa14.57□□□□□ -0.08
LDLR-214ENST00000560628 USP19O94966 1318 aa14.57□□□□□ -0.08
LDLR-214ENST00000560628 SPATA31A1Q5TZJ5 1347 aa14.57□□□□□ -0.08
LDLR-214ENST00000560628 TRPM1Q7Z4N2 1603 aa14.56□□□□□ -0.08
LDLR-214ENST00000560628 NRAPQ86VF7 1730 aa14.56□□□□□ -0.08
LDLR-214ENST00000560628 CRYBG1Q9Y4K1 1723 aa14.55□□□□□ -0.08
LDLR-214ENST00000560628 LARP1Q6PKG0 1096 aaKnown RBP14.55□□□□□ -0.08
LDLR-214ENST00000560628 USP6P35125 1406 aa14.55□□□□□ -0.08
LDLR-214ENST00000560628 ZNF692Q9BU19 519 aaPredicted RBP14.54□□□□□ -0.08
LDLR-214ENST00000560628 TONSLQ96HA7 1378 aa14.54□□□□□ -0.08
LDLR-214ENST00000560628 BRD4O60885 1362 aaPredicted RBP14.53□□□□□ -0.08
LDLR-214ENST00000560628 CPDO75976 1380 aa14.53□□□□□ -0.08
LDLR-214ENST00000560628 EP400Q96L91 3159 aa14.53□□□□□ -0.08
LDLR-214ENST00000560628 PHRF1Q9P1Y6 1649 aaKnown RBP14.52□□□□□ -0.08
LDLR-214ENST00000560628 SSH2Q76I76 1423 aa14.52□□□□□ -0.08
LDLR-214ENST00000560628 TTC21BQ7Z4L5 1316 aa14.52□□□□□ -0.08
LDLR-214ENST00000560628 SOX12O15370 315 aa14.52□□□□□ -0.09
LDLR-214ENST00000560628 CAMTA1Q9Y6Y1 1673 aa14.52□□□□□ -0.09
LDLR-214ENST00000560628 TCP11L2Q8N4U5 519 aa14.51□□□□□ -0.09
LDLR-214ENST00000560628 BAG6P46379 1132 aa14.5□□□□□ -0.09
LDLR-214ENST00000560628 EN1Q05925 392 aaPredicted RBP14.5□□□□□ -0.09
LDLR-214ENST00000560628 BARGINQ6ZT62 677 aa14.5□□□□□ -0.09
LDLR-214ENST00000560628 TMC1Q8TDI8 760 aa14.5□□□□□ -0.09
LDLR-214ENST00000560628 NRKQ7Z2Y5 1582 aa14.5□□□□□ -0.09
LDLR-214ENST00000560628 PDE3BQ13370 1112 aa14.49□□□□□ -0.09
LDLR-214ENST00000560628 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.49□□□□□ -0.09
LDLR-214ENST00000560628 KTN1Q86UP2 1357 aaKnown RBP14.48□□□□□ -0.09
LDLR-214ENST00000560628 TRIM37O94972 964 aa14.48□□□□□ -0.09
LDLR-214ENST00000560628 FAM196AQ6ZSG2 479 aa14.48□□□□□ -0.09
LDLR-214ENST00000560628 SLC12A5Q9H2X9 1139 aa14.48□□□□□ -0.09
LDLR-214ENST00000560628 AXIN2Q9Y2T1 843 aa14.48□□□□□ -0.09
LDLR-214ENST00000560628 AATKQ6ZMQ8 1374 aa14.47□□□□□ -0.09
LDLR-214ENST00000560628 TTC21AQ8NDW8 1320 aa14.46□□□□□ -0.09
LDLR-214ENST00000560628 TOM1L2Q6ZVM7 507 aa14.46□□□□□ -0.09
LDLR-214ENST00000560628 ARHGEF25Q86VW2 580 aa14.46□□□□□ -0.09
LDLR-214ENST00000560628 KCNH5Q8NCM2 988 aa14.46□□□□□ -0.09
LDLR-214ENST00000560628 THRAP3Q9Y2W1 955 aaKnown RBP14.46□□□□□ -0.09
LDLR-214ENST00000560628 CPSF1Q10570 1443 aaKnown RBP14.46□□□□□ -0.09
LDLR-214ENST00000560628 THSD7AQ9UPZ6 1657 aa14.46□□□□□ -0.1
LDLR-214ENST00000560628 COL5A2P05997 1499 aaPredicted RBP14.45□□□□□ -0.1
LDLR-214ENST00000560628 ST20-MTHFSA0A0A6YYL1 179 aa14.45□□□□□ -0.1
LDLR-214ENST00000560628 PSDA5PKW4 1024 aaPredicted RBP14.45□□□□□ -0.1
LDLR-214ENST00000560628 SBNO2Q9Y2G9 1366 aa14.45□□□□□ -0.1
LDLR-214ENST00000560628 APBA3O96018 575 aa14.44□□□□□ -0.1
LDLR-214ENST00000560628 EZH2Q15910 746 aaKnown RBP14.44□□□□□ -0.1
LDLR-214ENST00000560628 HDGFL2Q7Z4V5 671 aaPredicted RBP14.44□□□□□ -0.1
LDLR-214ENST00000560628 NME9Q86XW9 330 aa14.44□□□□□ -0.1
LDLR-214ENST00000560628 LMO7Q8WWI1 1683 aa14.44□□□□□ -0.1
LDLR-214ENST00000560628 SLIT3O75094 1523 aa14.44□□□□□ -0.1
LDLR-214ENST00000560628 PIK3C2AO00443 1686 aa14.43□□□□□ -0.1
LDLR-214ENST00000560628 CRB1P82279 1406 aa14.43□□□□□ -0.1
LDLR-214ENST00000560628 CSB-PGBD3P0DP91 1061 aa14.43□□□□□ -0.1
LDLR-214ENST00000560628 TESK2Q96S53 571 aa14.42□□□□□ -0.1
LDLR-214ENST00000560628 CAMKK2Q96RR4 588 aa14.41□□□□□ -0.1
LDLR-214ENST00000560628 PCGF6Q9BYE7 350 aa14.41□□□□□ -0.1
LDLR-214ENST00000560628 TERF2IPQ9NYB0 399 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms