RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 SSH2Q76I76 1423 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 ATF3P18847 181 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 CADPS2Q86UW7 1296 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 NGDNQ8NEJ9 315 aaKnown RBP11.61□□□□□ -0.55
TRAF3-209ENST00000560463 RBM33Q96EV2 1170 aaKnown RBP11.61□□□□□ -0.55
TRAF3-209ENST00000560463 PHF8Q9UPP1 1060 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 C1orf167Q5SNV9 1468 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 ALS2Q96Q42 1657 aa11.61□□□□□ -0.55
TRAF3-209ENST00000560463 ZNF335Q9H4Z2 1342 aaPredicted RBP11.6□□□□□ -0.55
TRAF3-209ENST00000560463 SCAF1Q9H7N4 1312 aaKnown RBP11.6□□□□□ -0.55
TRAF3-209ENST00000560463 MST1RQ04912 1400 aa11.6□□□□□ -0.55
TRAF3-209ENST00000560463 CCDC184Q52MB2 194 aa11.6□□□□□ -0.55
TRAF3-209ENST00000560463 PMFBP1Q8TBY8 1022 aa11.6□□□□□ -0.55
TRAF3-209ENST00000560463 TTC21BQ7Z4L5 1316 aa11.6□□□□□ -0.55
TRAF3-209ENST00000560463 LTBP4Q8N2S1 1624 aa11.59□□□□□ -0.55
TRAF3-209ENST00000560463 INSRP06213 1382 aa11.58□□□□□ -0.56
TRAF3-209ENST00000560463 NHSL1Q5SYE7 1610 aa11.58□□□□□ -0.56
TRAF3-209ENST00000560463 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.58□□□□□ -0.56
TRAF3-209ENST00000560463 PNISRQ8TF01 805 aaKnown RBP11.58□□□□□ -0.56
TRAF3-209ENST00000560463 GGNBP2Q9H3C7 697 aa11.58□□□□□ -0.56
TRAF3-209ENST00000560463 USP31Q70CQ4 1352 aa11.57□□□□□ -0.56
TRAF3-209ENST00000560463 ESCO1Q5FWF5 840 aa11.57□□□□□ -0.56
TRAF3-209ENST00000560463 COG3Q96JB2 828 aa11.57□□□□□ -0.56
TRAF3-209ENST00000560463 OVOS2A0A0J9YW53 1432 aa11.57□□□□□ -0.56
TRAF3-209ENST00000560463 OVOS2Q6IE36 1432 aa11.57□□□□□ -0.56
TRAF3-209ENST00000560463 AATKQ6ZMQ8 1374 aa11.56□□□□□ -0.56
TRAF3-209ENST00000560463 FAM9BQ8IZU0 186 aa11.56□□□□□ -0.56
TRAF3-209ENST00000560463 YTHDC1Q96MU7 727 aaKnown RBP11.56□□□□□ -0.56
TRAF3-209ENST00000560463 PHRF1Q9P1Y6 1649 aaKnown RBP11.56□□□□□ -0.56
TRAF3-209ENST00000560463 SMG6Q86US8 1419 aaKnown RBP11.55□□□□□ -0.56
TRAF3-209ENST00000560463 CENPBP07199 599 aaPredicted RBP11.55□□□□□ -0.56
TRAF3-209ENST00000560463 PSME1Q06323 249 aa11.55□□□□□ -0.56
TRAF3-209ENST00000560463 NME9Q86XW9 330 aa11.55□□□□□ -0.56
TRAF3-209ENST00000560463 CFAP53Q96M91 514 aa11.55□□□□□ -0.56
TRAF3-209ENST00000560463 CRYBG1Q9Y4K1 1723 aa11.55□□□□□ -0.56
TRAF3-209ENST00000560463 ORAI2Q96SN7 254 aa11.54□□□□□ -0.56
TRAF3-209ENST00000560463 TNNT2P45379 298 aaPredicted RBP11.53□□□□□ -0.56
TRAF3-209ENST00000560463 RGPD5Q99666 1765 aa11.53□□□□□ -0.56
TRAF3-209ENST00000560463 PEAK1Q9H792 1746 aa11.52□□□□□ -0.56
TRAF3-209ENST00000560463 CDK12Q9NYV4 1490 aaPredicted RBP11.52□□□□□ -0.56
TRAF3-209ENST00000560463 MTHFSP49914 203 aa11.52□□□□□ -0.57
TRAF3-209ENST00000560463 WDR43Q15061 677 aaKnown RBP eCLIP11.52□□□□□ -0.57
TRAF3-209ENST00000560463 DLG5Q8TDM6 1919 aa11.52□□□□□ -0.57
TRAF3-209ENST00000560463 ROBO1Q9Y6N7 1651 aa11.52□□□□□ -0.57
TRAF3-209ENST00000560463 COL3A1P02461 1466 aaPredicted RBP11.51□□□□□ -0.57
TRAF3-209ENST00000560463 ABTB2Q8N961 1025 aa11.51□□□□□ -0.57
TRAF3-209ENST00000560463 SLAIN2Q9P270 581 aa11.51□□□□□ -0.57
TRAF3-209ENST00000560463 NPHP3Q7Z494 1330 aa11.51□□□□□ -0.57
TRAF3-209ENST00000560463 PNPLA6Q8IY17 1366 aa11.51□□□□□ -0.57
TRAF3-209ENST00000560463 BLMP54132 1417 aaPredicted RBP11.51□□□□□ -0.57
TRAF3-209ENST00000560463 PXDNQ92626 1479 aa11.51□□□□□ -0.57
TRAF3-209ENST00000560463 SLIT3O75094 1523 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 RGPD1P0DJD0 1748 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 ABCA3Q99758 1704 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 FOXO3O43524 673 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 PAK3O75914 559 aaPredicted RBP11.5□□□□□ -0.57
TRAF3-209ENST00000560463 NLRP6P59044 892 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 KRT28Q7Z3Y7 464 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 ZRANB1Q9UGI0 708 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 SBNO1A3KN83 1393 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 KIF24Q5T7B8 1368 aa11.5□□□□□ -0.57
TRAF3-209ENST00000560463 HNRNPUQ00839 825 aaKnown RBP eCLIP11.49□□□□□ -0.57
TRAF3-209ENST00000560463 POLKQ9UBT6 870 aa11.49□□□□□ -0.57
TRAF3-209ENST00000560463 IQSEC2Q5JU85 1478 aa11.49□□□□□ -0.57
TRAF3-209ENST00000560463 NFAT5O94916 1531 aa11.49□□□□□ -0.57
TRAF3-209ENST00000560463 MED1Q15648 1581 aaPredicted RBP11.49□□□□□ -0.57
TRAF3-209ENST00000560463 RGPD2P0DJD1 1756 aa11.49□□□□□ -0.57
TRAF3-209ENST00000560463 NUDCQ9Y266 331 aa11.48□□□□□ -0.57
TRAF3-209ENST00000560463 VIRMAQ69YN4 1812 aaKnown RBP11.48□□□□□ -0.57
TRAF3-209ENST00000560463 PHLPP1O60346 1717 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 FAM208AQ9UK61 1670 aaKnown RBP11.47□□□□□ -0.57
TRAF3-209ENST00000560463 AHDC1Q5TGY3 1603 aaPredicted RBP11.47□□□□□ -0.57
TRAF3-209ENST00000560463 TNS3Q68CZ2 1445 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 ZBED9Q6R2W3 1325 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 BRINP3Q76B58 766 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 KCNH5Q8NCM2 988 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 ADAMTS8Q9UP79 889 aa11.47□□□□□ -0.57
TRAF3-209ENST00000560463 DIAPH1O60610 1272 aaKnown RBP11.46□□□□□ -0.57
TRAF3-209ENST00000560463 COL18A1P39060 1754 aa11.46□□□□□ -0.58
TRAF3-209ENST00000560463 RTL1A6NKG5 1358 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 ARHGEF10O15013 1369 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 FLT4P35916 1363 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 NGEFQ8N5V2 710 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 PNNQ9H307 717 aaKnown RBP11.45□□□□□ -0.58
TRAF3-209ENST00000560463 EMILIN1Q9Y6C2 1016 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 ABCC6O95255 1503 aa11.45□□□□□ -0.58
TRAF3-209ENST00000560463 USP19O94966 1318 aa11.44□□□□□ -0.58
TRAF3-209ENST00000560463 SOS2Q07890 1332 aaPredicted RBP11.44□□□□□ -0.58
TRAF3-209ENST00000560463 RRS1Q15050 365 aaKnown RBP11.44□□□□□ -0.58
TRAF3-209ENST00000560463 COL22A1Q8NFW1 1626 aaPredicted RBP11.44□□□□□ -0.58
TRAF3-209ENST00000560463 SPATA31A3Q5VYP0 1347 aa11.43□□□□□ -0.58
TRAF3-209ENST00000560463 PPM1GO15355 546 aaPredicted RBP11.43□□□□□ -0.58
TRAF3-209ENST00000560463 FBLN1P23142 703 aa11.43□□□□□ -0.58
TRAF3-209ENST00000560463 MAP3K19Q56UN5 1328 aa11.42□□□□□ -0.58
TRAF3-209ENST00000560463 XPCQ01831 940 aaPredicted RBP11.42□□□□□ -0.58
TRAF3-209ENST00000560463 NCBP3Q53F19 620 aaKnown RBP11.42□□□□□ -0.58
TRAF3-209ENST00000560463 NUTM2GQ5VZR2 741 aa11.42□□□□□ -0.58
TRAF3-209ENST00000560463 CAMTA1Q9Y6Y1 1673 aa11.42□□□□□ -0.58
TRAF3-209ENST00000560463 U2AF1L5P0DN76 240 aaPredicted RBP11.41□□□□□ -0.58
TRAF3-209ENST00000560463 AMPHP49418 695 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms